Halorientalis persicus sp. nov., an extremely halophilic archaeon isolated from a salt lake and emended description of the genus Halorientalis

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 3, 2014, Pages 940-944

  Amoozegar, Mohammad Ali ^a,b   Makhdoumi Kakhki, Ali ^c   Mehrshad, Maliheh ^a,b   Fazeli, Seyed Abolhassan Shahzadeh ^b   Sproër, Cathrin ^d   Ventosa, Antonio ^e  

^a UNIVERSITY OF TEHRAN   (Iran)

^b AVICENNA RESEARCH INSTITUTE   (Iran)

^c FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

^d LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^e UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHATIDYLGLYCEROL; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; CELL STRUCTURE; DNA DNA HYBRIDIZATION; ESCHERICHIA COLI; EVOLUTION; GENE SEQUENCE; HALOBACTERIALES; HALOPHILIC ARCHAEON; HALORIENTALIS PERSICUS; LIPID COMPOSITION; METHANOGENIC ARCHAEON; METHANOSPIRILLUM HUNGATEI; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SALT LAKE; TYPE STRAIN;

BASE COMPOSITION; DNA, ARCHAEAL; GLYCOLIPIDS; HALOBACTERIACEAE; IRAN; LAKES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; VITAMIN K 2; WATER MICROBIOLOGY;

EID: 84896866009     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.058164-0     Document Type: Article

References (23)

1. Balch, W. E. & Wolfe, R. S. (1976). New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized [sic] atmosphere. Appl Environ Microbiol 32, 781-791.
2. Bryant, M. P. (1972). Commentary on the Hungate technique for culture of anaerobic bacteria. Am J Clin Nutr 25, 1324-1328.
3. Cui, H. L., Yang, X., Gao, X. & Xu, X. W. (2011). Halobellus clavatus gen. nov., sp. nov. and Halorientalis regularis gen. nov., sp. nov., two new members of the family Halobacteriaceae. Int J Syst Evol Microbiol 61, 2682-2689.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. DeLong, E. F. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci U S A 89, 5685-5689.
6. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
7. Dyall-Smith, M. (2008). The Halohandbook: Protocols for Haloarchaeal Genetics. http://www.haloarchaea.com/resources/halohandbook.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using bootstrap. Evolution 39, 783-791.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. González, C., Gutiérrez, C. & Ramirez, C. (1978). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715.
11. Gutiérrez, C. & González, C. (1972). Method for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24, 516-517.
12. Hezayen, F. F., Rehm, B. H. A., Tindall, B. J. & Steinbüchel, A. (2001). Transfer of Natrialba asiatica B1T to Natrialba taiwanensis sp. nov. and description of Natrialba aegyptiaca sp. nov., a novel extremely halophilic, aerobic, non-pigmented member of the Archaea from Egypt that produces extracellular poly(glutamic acid). Int J Syst Evol Microbiol 51, 1133-1142.
13. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
14. Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. & Pace, N. R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A 82, 6955-6959.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
17. Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9, 945-967.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
21. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
22. Wainø, M., Tindall, B. J. & Ingvorsen, K. (2000). Halorhabdus utahensis gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea fromGreat Salt Lake, Utah. Int J Syst Evol Microbiol 50, 183-190.
23. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.