Structure and function of C-terminal domain of aciniform spidroin

Biomacromolecules

Volumn 15, Issue 2, 2014, Pages 468-477

  Wang, Shujing ^a,b   Huang, Weidong ^a,c   Yang, Daiwen ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^c NINGXIA MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; C-TERMINAL DOMAINS; DIFFERENTIAL FUNCTIONS; PROTEIN ASSEMBLY; SEQUENCE IDENTITY; SHEAR FORCE; SILK PROTEINS; STRUCTURES AND PROPERTIES;

AMINO ACIDS; CHAINS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS; SHEAR FLOW;

PLANTS (BOTANY);

PROTEIN; SPIDROIN; UNCLASSIFIED DRUG; FIBROIN;

AMINO ACID SEQUENCE; ARTICLE; CARBOXY TERMINAL DOMAIN; CIRCULAR DICHROISM; DIMERIZATION; FORCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; POINT MUTATION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN STRUCTURE; PROTEIN UNFOLDING; STORAGE; CHEMICAL STRUCTURE; CHEMISTRY; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEAR MAGNETIC RESONANCE; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; FIBROINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN UNFOLDING; SEQUENCE ALIGNMENT;

EID: 84896743292     PISSN: 15257797     EISSN: 15264602     Source Type: Journal    
DOI: 10.1021/bm401709v     Document Type: Article

References (38)

1. Vasanthavada, K.; Hu, X.; Falick, A. M.; La Mattina, C.; Moore, A. M.; Jones, P. R.; Yee, R.; Reza, R.; Tuton, T.; Vierra, C. Aciniform spidroin, a constituent of egg case sacs and wrapping silk fibers from the black widow spider Latrodectus hesperus. J. Biol. Chem. 2007, 282(48), 35088-97.
2. Hayashi, C. Y.; Blackledge, T. A.; Lewis, R. V. Molecular and mechanical characterization of aciniform silk: Uniformity of iterated sequence modules in a novel member of the spider silk fibroin gene family. Mol. Biol. Evol. 2004, 21(10), 1950-9.
3. Heim, M.; Keerl, D.; Scheibel, T. Spider silk: From soluble protein to extraordinary fiber. Angew. Chem., Int. Ed. Engl. 2009, 48(20), 3584-96.
4. Lewis, R. V. Spider silk: Ancient ideas for new biomaterials. Chem. Rev. 2006, 106(9), 3762-74.
5. Heim, M.; Ackerschott, C. B.; Scheibel, T. Characterization of recombinantly produced spider flagelliform silk domains. J. Struct. Biol. 2010, 170(2), 420-5.
6. Huang, W.; Lin, Z.; Sin, Y. M.; Li, D.; Gong, Z.; Yang, D. Characterization and expression of a cDNA encoding a tubuliform silk protein of the golden web spider Nephila antipodiana. Biochimie 2006, 88(7), 849-58.
7. Wang, S.; Huang, W.; Yang, D. NMR structure note: Repetitive domain of aciniform spidroin 1 from Nephila antipodiana. J. Biomol. NMR 2012, 54(4), 415-20.
8. Lawrence, B. A.; Vierra, C. A.; Moore, A. M. Molecular and mechanical properties of major ampullate silk of the black widow spider, Latrodectus hesperus. Biomacromolecules 2004, 5(3), 689-95.
9. Ayoub, N. A.; Garb, J. E.; Kuelbs, A.; Hayashi, C. Y. Ancient properties of spider silks revealed by the complete gene sequence of the prey-wrapping silk protein (AcSp1). Mol. Biol. Evol. 2013, 30(3), 589-601.
10. Challis, R. J.; Goodacre, S. L.; Hewitt, G. M. Evolution of spider silks: Conservation and diversification of the C-terminus. Insect Mol. Biol. 2006, 15(1), 45-56.
11. Li, M.; Liu, J.; Ran, X.; Fang, M.; Shi, J.; Qin, H.; Goh, J. M.; Song, J. Resurrecting abandoned proteins with pure water: CD and NMR studies of protein fragments solubilized in salt-free water. Biophys. J. 2006, 91(11), 4201-9.
12. Askarieh, G.; Hedhammar, M.; Nordling, K.; Saenz, A.; Casals, C.; Rising, A.; Johansson, J.; Knight, S. D. Self-assembly of spider silk proteins is controlled by a pH-sensitive relay. Nature 2010, 465(7295), 236-8.
13. Lin, Z.; Huang, W.; Zhang, J.; Fan, J. S.; Yang, D. Solution structure of eggcase silk protein and its implications for silk fiber formation. Proc. Natl. Acad. Sci. U. S. A. 2009, 106(22), 8906-11.
14. Hagn, F.; Eisoldt, L.; Hardy, J. G.; Vendrely, C.; Coles, M.; Scheibel, T.; Kessler, H. A conserved spider silk domain acts as a molecular switch that controls fibre assembly. Nature 2010, 465(7295), 239-42.
15. Gao, Z.; Lin, Z.; Huang, W.; Lai, C. C.; Fan, J. S.; Yang, D. Structural characterization of minor ampullate spidroin domains and their distinct roles in fibroin solubility and fiber formation. PLoS One 2013, 8(2), e56142.
16. Stark, M.; Grip, S.; Rising, A.; Hedhammar, M.; Engstrom, W.; Hjalm, G.; Johansson, J. Macroscopic fibers self-assembled from recombinant miniature spider silk proteins. Biomacromolecules 2007, 8(5), 1695-701.
17. Hedhammar, M.; Rising, A.; Grip, S.; Martinez, A. S.; Nordling, K.; Casals, C.; Stark, M.; Johansson, J. Structural properties of recombinant nonrepetitive and repetitive parts of major ampullate spidroin 1 from Euprosthenops australis: implications for fiber formation. Biochemistry 2008, 47(11), 3407-17.
18. Hagn, F. A structural view on spider silk proteins and their role in fiber assembly. J. Pept. Sci. 2012, 18(6), 357-65.
19. Ittah, S.; Cohen, S.; Garty, S.; Cohn, D.; Gat, U. An essential role for the C-terminal domain of a dragline spider silk protein in directing fiber formation. Biomacromolecules 2006, 7(6), 1790-5.
20. Gnesa, E.; Hsia, Y.; Yarger, J. L.; Weber, W.; Lin-Cereghino, J.; Lin-Cereghino, G.; Tang, S.; Agari, K.; Vierra, C. Conserved Cterminal domain of spider tubuliform spidroin 1 contributes to extensibility in synthetic fibers. Biomacromolecules 2011, 13(2), 304-12.
21. Geurts, P.; Zhao, L.; Hsia, Y.; Gnesa, E.; Tang, S.; Jeffery, F.; La Mattina, C.; Franz, A.; Larkin, L.; Vierra, C. Synthetic spider silk fibers spun from Pyriform Spidroin 2, a glue silk protein discovered in orbweaving spider attachment discs. Biomacromolecules 2010, 11(12), 3495-503.
22. Xu, L.; Rainey, J. K.; Meng, Q.; Liu, X. Q. Recombinant minimalist spider wrapping silk proteins capable of native-like fiber formation. PLoS One 2012, 7(11), e50227.
23. Lin, Z.; Deng, Q.; Liu, X. Y.; Yang, D. Engineered large spider eggcase silk protein for strong artificial fibers. Adv. Mater. 2012, 25(8), 1216-20.
24. Yang, D. W.; Zheng, Y.; Liu, D. J.; Wyss, D. F. Sequence-specific assignments of methyl groups in high-molecular weight proteins. J. Am. Chem. Soc. 2004, 126(12), 3710-3711.
25. Xu, Y. Q.; Long, D.; Yang, D. W. Rapid data collection for protein structure determination by NMR spectroscopy. J. Am. Chem. Soc. 2007, 129(25), 7722-7723.
26. Zwahlen, C.; Legault, P.; Vincent, S. J. F.; Greenblatt, J.; Konrat, R.; Kay, L. E. Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: Application to a bacteriophage lambda N-peptide/boxB RNA complex. J. Am. Chem. Soc. 1997, 119(29), 6711-6721.
27. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 1995, 6(3), 277-93.
28. Xu, Y. Q.; Zheng, Y.; Fan, J. S.; Yang, D. W. A new strategy for structure determination of large proteins in solution without deuteration. Nat. Methods 2006, 3(11), 931-937.
29. Güntert, P.; Mumenthaler, C.; Wüthrich, K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 1997, 273(1), 283-98.
30. Koradi, R.; Billeter, M.; Wuthrich, K. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graphics 1996, 14(1), 51-.
31. Laskowski, R. A.; Rullmannn, J. A.; MacArthur, M. W.; Kaptein, R.; Thornton, J. M. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 1996, 8(4), 477-86.
32. Xia, X.; Qian, Z.; Ki, C.; Park, Y.; Kaplan, D.; Lee, S. Nativesized recombinant spider silk protein produced in metabolically engineered Escherichia coli results in a strong fiber. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 14059-63.
33. Garb, J. E.; Ayoub, N. A.; Hayashi, C. Y. Untangling spider silk evolution with spidroin terminal domains. BMC Evol. Biol. 2010, 10, 243.
34. Paavilainen, V. O.; Merckel, M. C.; Falck, S.; Ojala, P. J.; Pohl, E.; Wilmanns, M.; Lappalainen, P. Structural conservation between the actin monomer-binding sites of twinfilin and actin-depolymerizing factor (ADF)/Cofilin. J. Biol. Chem. 2002, 277(45), 43089-43095.
35. Poukkula, M.; Kremneva, E.; Serlachius, M.; Lappalainen, P. Actin-depolymerizing factor homology domain: A conserved fold performing diverse roles in cytoskeletal dynamics. Cytoskeleton 2011, 68(9), 471-490.
36. Ogura, T.; Wilkinson, A. J. AAA+ superfamily ATPases: Common structure-diverse function. Genes Cells 2001, 6(7), 575-97.
37. Kim, C. A.; Bowie, J. U. SAM domains: Uniform structure, diversity of function. Trends Biochem. Sci. 2003, 28(12), 625-8.
38. Smith, T. F.; Gaitatzes, C.; Saxena, K.; Neer, E. J. The WD repeat: A common architecture for diverse functions. Trends Biochem. Sci. 1999, 24(5), 181-5.