Occurrence of virulence genes, 16S rRNA methylases, and plasmid-mediated quinolone resistance genes in CTX-M-producing Escherichia coli from Pakistan

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 33, Issue 3, 2014, Pages 399-409

  Habeeb, M A ^a,b,c,d   Haque, A ^a,b   Iversen, A ^c   Giske, C G ^c  

^a NATIONAL INSTITUTE FOR BIOTECHNOLOGY AND GENETIC ENGINEERING NIBGE   (Pakistan)

^b PAKISTAN INSTITUTE OF ENGINEERING AND APPLIED SCIENCES   (Pakistan)

^c KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^d UNIVERSITY OF LAHORE   (Pakistan)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA METHYLASE; ADHESIN; AMIKACIN; BACTERIAL ENZYME; BETA LACTAMASE CTX M; CEFOTAXIME; CEFTAZIDIME; CIPROFLOXACIN; CLAVULANIC ACID; GENTAMICIN; MEROPENEM; PIPERACILLIN; QUINOLONE; SIDEROPHORE; SULFAMETHOXAZOLE; TAZOBACTAM; TRIMETHOPRIM; UNCLASSIFIED DRUG; VIRULENCE FACTOR;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; COMMUNICABLE DISEASE; ESCHERICHIA COLI; EXTENDED SPECTRUM BETA LACTAMASE PRODUCING ESCHERICHIA COLI; GENETIC VARIABILITY; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; PAKISTAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; REAL TIME POLYMERASE CHAIN REACTION; REPLICON;

BETA-LACTAMASES; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; HUMANS; METHYLTRANSFERASES; PAKISTAN; PHYLOGENY; PLASMIDS; PREVALENCE; QUINOLONES; RNA, RIBOSOMAL, 16S; VIRULENCE FACTORS;

EID: 84896735801     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-013-1970-1     Document Type: Article

References (32)

1. Blanco M, Alonso MP, Nicolas-Chanoine MH, Dahbi G, Mora A, Blanco JE et al (2009) Molecular epidemiology of Escherichia coli producing extended-spectrum β-lactamases in Lugo (Spain): dissemination of clone O25b:H4-ST131 producing CTX-M-15. J Antimicrob Chemother 63(6):1135-1141
2. Naseer U, Sundsfjord A (2011) The CTX-M conundrum: dissemination of plasmids and Escherichia coli clones. Microb Drug Resist 17(1):83-97
3. Oteo J, Delgado-Iribarren A, Vega D, Bautista V, Rodríguez MC, Velasco M et al (2008) Emergence of imipenem resistance in clinical Escherichia coli during therapy. Int J Antimicrob Agents 32(6):534-537
4. Woodford N, Turton JF, Livermore DM (2011) Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiol Rev 35(5):736-755
5. Clermont O, Dhanji H, Upton M, Gibreel T, Fox A, Boyd D et al (2009) Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains. J Antimicrob Chemother 64(2):274-277
6. Soge OO, Adeniyi BA, Roberts MC (2006) New antibiotic resistance genes associated with CTX-M plasmids from uropathogenic Nigerian Klebsiella pneumoniae. J Antimicrob Chemother 58(5):1048-1053
7. Cantón R (2009) Antibiotic resistance genes from the environment: a perspective through newly identified antibiotic resistance mechanisms in the clinical setting. Clin Microbiol Infect 15:20-25
8. Shin SY, Kwon KC, Park JW, Song JH, Ko YH, Sung JY et al (2009) Characteristics of aac(6′)-Ib-cr gene in extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae isolated from Chungnam area. Korean J Lab Med 29(6):541-550
9. Hussain M, Hasan F, Shah AA, Hameed A, Jung M, Rayamajhi N et al (2011) Prevalence of class A and AmpC β-lactamases in clinical Escherichia coli isolates from Pakistan Institute of Medical Science, Islamabad, Pakistan. Jpn J Infect Dis 64(3):249-252
10. Clinical and Laboratory Standards Institute (CLSI) (2012) Performance standards for antimicrobial susceptibility testing; 22nd informational supplement. CLSI document M100-S22. CLSI, Wayne
11. European Committee on Antimicrobial Susceptibility Testing (EUCAST) (2012) Breakpoint tables for interpretation of MICs and zone diameters. Version 2.0
12. Tofteland S, Haldorsen B, Dahl KH, Simonsen GS, Steinbakk M, Walsh TR et al (2007) Effects of phenotype and genotype on methods for detection of extended-spectrum-β-lactamase-producing clinical isolates of Escherichia coli and Klebsiella pneumoniae in Norway. J Clin Microbiol 45(1):199-205
13. Birkett CI, Ludlam HA, Woodford N, Brown DF, Brown NM, Roberts MT et al (2007) Real-time TaqMan PCR for rapid detection and typing of genes encoding CTX-M extended-spectrum β-lactamases. J Med Microbiol 56(Pt 1):52-55
14. Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B et al (2006) Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis 3(1):59-67
15. Castanheira M, Fritsche TR, Sader HS, Jones RN (2008) RmtD 16S RNA methylase in epidemiologically unrelated spm-1-producing Pseudomonas aeruginosa isolates from Brazil. Antimicrob Agents Chemother 52(4):1587-1588, author reply 1588
16. Zhou TL, Chen XJ, Zhou MM, Zhao YJ, Luo XH, Bao QY (2011) Prevalence of plasmid-mediated quinolone resistance in Escherichia coli isolates in Wenzhou, Southern China, 2002-2008. Jpn J Infect Dis 64(1):55-57
17. Park CH, Robicsek A, Jacoby GA, Sahm D, Hooper DC (2006) Prevalence in the United States of aac(6′)-Ib-cr encoding a ciprofloxacin-modifying enzyme. Antimicrob Agents Chemother 50(11):3953-3955
18. Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL, Threlfall EJ (2005) Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63(3):219-228
19. Clermont O, Bonacorsi S, Bingen E (2000) Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol 66(10):4555-4558
20. Clermont O, Johnson JR, Menard M, Denamur E (2007) Determination of Escherichia coli O types by allele-specific polymerase chain reaction: application to the O types involved in human septicemia. Diagn Microbiol Infect Dis 57(2):129-136
21. Johnson JR, Stell AL (2000) Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J Infect Dis 181(1):261-272
22. Moulin-Schouleur M, Schouler C, Tailliez P, Kao MR, Brée A, Germon P et al (2006) Common virulence factors and genetic relationships between O18:K1:H7 Escherichia coli isolates of human and avian origin. J Clin Microbiol 44(10):3484-3492
23. Tivendale KA, Allen JL, Ginns CA, Crabb BS, Browning GF (2004) Association of iss and iucA, but not tsh, with plasmid-mediated virulence of avian pathogenic Escherichia coli. Infect Immun 72(11):6554-6560
24. Johnson JR, Gajewski A, Lesse AJ, Russo TA (2003) Extraintestinal pathogenic Escherichia coli as a cause of invasive nonurinary infections. J Clin Microbiol 41(12):5798-5802
25. Johnson JR, Russo TA, Tarr PI, Carlino U, Bilge SS, Vary JC Jr et al (2000) Molecular epidemiological and phylogenetic associations of two novel putative virulence genes, iha and iroN (E. coli), among Escherichia coli isolates from patients with urosepsis. Infect Immun 68(5):3040-3047
26. Gannon VP, D'Souza S, Graham T, King RK, Rahn K, Read S (1997) Use of the flagellar H7 gene as a target in multiplex PCR assays and improved specificity in identification of enterohemorrhagic Escherichia coli strains. J Clin Microbiol 35(3):656-662
27. Bauer RJ, Zhang L, Foxman B, Siitonen A, Jantunen ME, Saxen H et al (2002) Molecular epidemiology of 3 putative virulence genes for Escherichia coli urinary tract infection-usp, iha, and iroN (E. coli). J Infect Dis 185(10):1521-1524
28. Hopkins KL, Liebana E, Villa L, Batchelor M, Threlfall EJ, Carattoli A (2006) Replicon typing of plasmids carrying CTX-M or CMY β-lactamases circulating among Salmonella and Escherichia coli isolates. Antimicrob Agents Chemother 50(9):3203-3206
29. Mshana SE, Imirzalioglu C, Hossain H, Hain T, Domann E, Chakraborty T (2009) Conjugative IncFI plasmids carrying CTX-M-15 among Escherichia coli ESBL producing isolates at a University hospital in Germany. BMC Infect Dis 9:97
30. Marcadé G, Deschamps C, Boyd A, Gautier V, Picard B, Branger C et al (2009) Replicon typing of plasmids in Escherichia coli producing extended-spectrum β-lactamases. J Antimicrob Chemother 63(1):67-71
31. Carattoli A (2008) Plasmids in clinically significant Gram-negative bacteria. Available online at: http://www.touchinfectiousdisease.com/articles/ plasmids-clinically-significant-gram-negative-bacteria
32. Mokracka J, Koczura R, Jabłońska L, Kaznowski A (2011) Phylogenetic groups, virulence genes and quinolone resistance of integron-bearing Escherichia coli strains isolated from a wastewater treatment plant. Antonie Van Leeuwenhoek 99(4):817-824