A new ilarvirus isolated from Viola × wittrockiana and its detection in pansy germoplasm by qRT-PCR

Archives of Virology

Volumn 159, Issue 3, 2014, Pages 561-565

  Ciuffo, M ^a   Pacifico, D ^a   Margaria, P ^a   Turina, M ^a  

^a INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

Author keywords

Bromoviridae; Pansy; Viola white distortion associated virus

Indexed keywords

BROMOVIRIDAE; BROMOVIRUS; ILARVIRUS; NICOTIANA BENTHAMIANA; PRUNE DWARF VIRUS; VIOLA;

COMPLEMENTARY DNA; DOUBLE STRANDED RNA; PRIMER DNA; VIRUS RNA;

ARTICLE; CHEMISTRY; DNA SEQUENCE; GENETICS; ILARVIRUS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PLANT DISEASE; REAL TIME POLYMERASE CHAIN REACTION; TOBACCO; VIOLA; VIROLOGY;

DNA PRIMERS; DNA, COMPLEMENTARY; ILARVIRUS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE PROBES; PLANT DISEASES; REAL-TIME POLYMERASE CHAIN REACTION; RNA, DOUBLE-STRANDED; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; TOBACCO; VIOLA; VIROLOGY;

EID: 84896726496     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1837-x     Document Type: Article

References (27)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
2. Bujarski J, Figlerowicz M, Gallitelli D, Roossinck MJ, Scott SW (2011) Family Bromoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz E (eds) Virus Taxonomy, ninth Report of the International Committee on Taxonomy of Viruses. Elsevier Academics Press, London, pp 1185-1189.
3. van Caneghem A, Poupet A, Beck D, Berling E (1997) Obtention de clones de violettes (Viola odorata) indemnes de virus par culture d'apex meristematique. Agronomie 17: 53-58.
4. Codoner FMJ, Cuevas M, Sanchez-Navarro JA, Pallas V, Elena SF (2005) Molecular evolution of the plant virus family Bromoviridae based on RNA 3-encoded proteins. J Mol Evol 61(5): 697-705.
5. Codoner FM, Elena SF (2006) Evolutionary relationships among members of the Bromoviridae deduced from whole proteome analysis. Arch Virol 15: 299-307.
6. Cooper JI, Harrison BD (1973) The role of weed hosts and the distribution and activity of vector nematodes in the ecology of tobacco rattle virus. Ann Appl Biol 73: 53-66.
7. Day PR, Dodds JA, Elliston JE, Jaynes RA, Anagnostakis SL (1977) Double-stranded RNA in Endothia parasitica. Phytopathology 67: 1393-1396.
8. Fonseca F, Neto JD, Martins V, Nolasco G (2005) Genomic variability of prune dwarf virus as affected by agricultural practice. Arch Virol 150: 1607-1619.
9. Galen RSM, Gambino SR (1975) Beyond normality: the predictive value and efficiency of medical diagnoses. John Wiley & Sons, Inc., New York.
10. Gowanlock DH, Dietzgen RG (1995) Small rhabdovirus-like particles in violet (Viola spp.). Australas Plant Pathol 24: 215-216.
11. Kitajima EW, Verle Rodrigues JC, Freitas-Astua J (2010) An annotated list of ornamentals naturally found infected by Brevipalpus mite-transmitted viruses. Scientia Agricola 67: 348-371.
12. Lisa V, Dellavalle G (1977) Viola mottle virus, a new member of the Potexvirus group. J Phytopatol 89: 82-89.
13. Margaria P, Rosa C, Marzachi C, Turina M, Palmano S (2007) Detection of Flavescence doree phytoplasma in grapevine by reverse-transcription PCR. Plant Dis 91: 1496-1501.
14. Margaria P, Turina M, Palmano S (2009) Detection of Flavescence doree and Bois noir phytoplasmas, Grapevine leafroll associated virus-1 and -3 and Grapevine virus A from the same crude extract by reverse transcription-RealTime Taqman assays. Plant Pathol 58: 838-845.
15. Mink GI (1993) Pollen-transmitted and seed-transmitted viruses and viroids. Annu Rev Phytopathol 31: 375-402.
16. Pallas VF, Aparicio MC, Herranz K, AmariM Sanchez-Pina A, Myrta A, Sanchez-Navarro JA (2012) Ilarviruses of Prunus spp.: a continued concern for fruit trees. Phytopathology 102: 1108-1120.
17. Provvidenti R, Granett AL (1974) Sweet violet, a natural host of bean yellow mosaic virus. Plant Dis Rep 58: 155-156.
18. Rastgou M, Habibi MK, Izadpanah K, Masenga V, Milne RG, Wolf YI, Koonin EV, Turina M (2009) Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin. J Gen Virol 90: 2525-2535.
19. Rostagno L, Crivelli G, Turina M (2010) Study of mRNA expression by real time PCR of Cpkk1, Cpkk2 and Cpkk3, three MEKs of Cryphonectria parasitica, in virus-free and virus-infected isogenic isolates. J Phytopathol 158: 409-416.
20. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
21. Severin HP (1947) Viruses that induce breaking in color of flower petals in pansies and violas. Hilgardia 17: 577-588.
22. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
23. Turina M, Ciuffo M, Lenzi R, Rostagno L, Mela L, Derin E, Palmano S (2006) Characterization of four viral species belonging to the family Potyviridae isolated from Ranunculus asiaticus. Phytopathology 96: 560-566.
24. Tzanetakis IE, Martin RR, Scott SW (2010) Genomic sequences of blackberry chlorotic ringspot virus and strawberry necrotic shock virus and the phylogeny of viruses in subgroup 1 of the genus Ilarvirus. Arch Virol 155: 557-561.
25. Ulubas Serce C, Ertunc F, Oeztuerk A (2009) Identification and genomic variability of prune dwarf virus variants infecting stone fruit trees in Turkey. J Phytopathol 157: 298-305.
26. Vaskova D, Petrzik K, Spak J (2000) Molecular variability of the capsid protein of the prune dwarf virus. Eur J Plant Pathol 106: 573-580.
27. Valverde RA (1984) Unusual strain of cucumber mosaic virus causing flower-breaking symptoms in wild violets. Plant Dis 68: 913-915.