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Volumn 8, Issue 11, 2013, Pages

Multiple independent introductions of HIV-1 CRF01-AE identified in China: What are the implications for prevention?

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHINA; CLADISTICS; GENE SEQUENCE; GEOGRAPHIC DISTRIBUTION; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR PHYLOGENY; NONHUMAN; PHYLOGEOGRAPHY; SEQUENCE ALIGNMENT; STRAIN IDENTIFICATION; THAILAND; VIET NAM; VIRUS IDENTIFICATION; VIRUS STRAIN; VIRUS TRANSMISSION;

EID: 84896721185     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0080487     Document Type: Article
Times cited : (16)

References (46)
  • 1
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • doi:10.1097/QAD.0b013e328342ff93. PubMed: 21297424
    • Hemelaar J, Gouws E, Ghys PD, Osmanov S (2011) Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS 25: 679-689. doi:10.1097/QAD. 0b013e328342ff93. PubMed: 21297424.
    • (2011) AIDS , vol.25 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 2
    • 70350347718 scopus 로고    scopus 로고
    • A HIV-1 heterosexual transmission chain in Guangzhou, China: A molecular epidemiological study
    • doi:10.1186/1743-422X-6-148. PubMed: 19778458
    • Han Z, Leung TW, Zhao J, Wang M, Fan L et al. (2009) A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study. Virol J 6: 148. doi:10.1186/1743-422X-6-148. PubMed: 19778458.
    • (2009) Virol J , vol.6 , pp. 148
    • Han, Z.1    Leung, T.W.2    Zhao, J.3    Wang, M.4    Fan, L.5
  • 3
    • 84869121782 scopus 로고    scopus 로고
    • Reconstituting the Epidemic History of HIV Strain CRF01-AE among Men Who Have Sex with Men (MSM) in Liaoning, Northeastern China: Implications for the Expanding Epidemic among MSM in China
    • doi:10.1128/JVI.00262-12. PubMed: 22933290
    • An M, Han X, Xu J, Chu Z, Jia M et al. (2012) Reconstituting the Epidemic History of HIV Strain CRF01-AE among Men Who Have Sex with Men (MSM) in Liaoning, Northeastern China: Implications for the Expanding Epidemic among MSM in China. J Virol 86: 12402-12406. doi:10.1128/JVI.00262-12. PubMed: 22933290.
    • (2012) J Virol , vol.86 , pp. 12402-12406
    • An, M.1    Han, X.2    Xu, J.3    Chu, Z.4    Jia, M.5
  • 4
    • 0034886360 scopus 로고    scopus 로고
    • HIV/AIDS: Perspective on China
    • doi:10.1089/108729101316914449. PubMed: 11522218
    • Shao Y (2001) HIV/AIDS: perspective on China. AIDS Patient Care STDS 15: 431-432. doi:10.1089/108729101316914449. PubMed: 11522218.
    • (2001) AIDS Patient Care STDS , vol.15 , pp. 431-432
    • Shao, Y.1
  • 6
    • 33845330854 scopus 로고    scopus 로고
    • Dominance of HIV-1 subtype CRF01-AE in sexually acquired cases leads to a new epidemic in Yunnan province of China
    • doi:10.1371/journal.pmed.0030443. PubMed: 17105339
    • Zhang Y, Lu L, Ba L, Liu L, Yang L et al. (2006) Dominance of HIV-1 subtype CRF01-AE in sexually acquired cases leads to a new epidemic in Yunnan province of China. PLoS Med 3: e443. doi:10.1371/journal.pmed.0030443. PubMed: 17105339.
    • (2006) PLoS Med , vol.3
    • Zhang, Y.1    Lu, L.2    Ba, L.3    Liu, L.4    Yang, L.5
  • 7
    • 75749103788 scopus 로고    scopus 로고
    • Genetic and epidemiologic characterization of HIV-1 infection In Liaoning Province. China
    • doi:10.1097/QAI.0b013e3181c7d5bf
    • Han X, Dai D, Zhao B, Liu J, Ding H et al. (2010) Genetic and epidemiologic characterization of HIV-1 infection In Liaoning Province. China. J - Journal of Acquir Immune Defic Syndr 53 Suppl 1: S27-S33. doi:10.1097/QAI.0b013e3181c7d5bf.
    • (2010) J - Journal of Acquir Immune Defic Syndr , vol.53 , Issue.SUPPL. 1
    • Han, X.1    Dai, D.2    Zhao, B.3    Liu, J.4    Ding, H.5
  • 8
    • 79960418882 scopus 로고    scopus 로고
    • High genetic diversity of HIV-1 was found in men who have sex with men in Shijiazhuang, China
    • doi:10.1016/j.meegid.2011.05.017. PubMed: 21645646
    • Li L, Lu X, Li H, Chen L, Wang Z et al. (2011) High genetic diversity of HIV-1 was found in men who have sex with men in Shijiazhuang, China. Infect Genet Evol 11: 1487- 1492. doi:10.1016/j.meegid.2011.05.017. PubMed: 21645646.
    • (2011) Infect Genet Evol , vol.11 , pp. 1487-1492
    • Li, L.1    Lu, X.2    Li, H.3    Chen, L.4    Wang, Z.5
  • 9
    • 84866671502 scopus 로고    scopus 로고
    • Emergence of a new HIV type 1 CRF01-AE variant in Guangxi, Southern China
    • doi:10.1089/aid.2011.0364. PubMed: 22264007
    • Zeng H, Sun Z, Liang S, Li L, Jiang Y et al. (2012) Emergence of a new HIV type 1 CRF01-AE variant in Guangxi, Southern China. AIDS Res Hum Retroviruses 28: 1352-1356. doi:10.1089/aid.2011.0364. PubMed: 22264007.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 1352-1356
    • Zeng, H.1    Sun, Z.2    Liang, S.3    Li, L.4    Jiang, Y.5
  • 10
    • 67651171335 scopus 로고    scopus 로고
    • Near full-length genome characterization of an HIV-1 CRF01-AE strain in Jiangsu, China: Evidence of two independent introductions from Fujian
    • doi:10.1089/aid.2009.0002. PubMed: 19534629
    • Guo D, Ding N, Xu Y, Guo H, Wei JF et al. (2009) Near full-length genome characterization of an HIV-1 CRF01-AE strain in Jiangsu, China: evidence of two independent introductions from Fujian. AIDS Res Hum Retroviruses 25: 619-623. doi:10.1089/aid.2009.0002. PubMed: 19534629.
    • (2009) AIDS Res Hum Retroviruses , vol.25 , pp. 619-623
    • Guo, D.1    Ding, N.2    Xu, Y.3    Guo, H.4    Wei, J.F.5
  • 11
    • 68449094359 scopus 로고    scopus 로고
    • Molecular epidemiological study of HIV-1 CRF01-AE transmission in Hong Kong
    • doi:10.1097/QAI.0b013e3181aac516. PubMed: 19521252
    • Chen JH, Wong KH, Li P, Chan KC, Lee MP et al. (2009) Molecular epidemiological study of HIV-1 CRF01-AE transmission in Hong Kong. J Acquir Immune Defic Syndr 51: 530-535. doi:10.1097/QAI.0b013e3181aac516. PubMed: 19521252.
    • (2009) J Acquir Immune Defic Syndr , vol.51 , pp. 530-535
    • Chen, J.H.1    Wong, K.H.2    Li, P.3    Chan, K.C.4    Lee, M.P.5
  • 16
    • 84865471856 scopus 로고    scopus 로고
    • Multiple introductions of HIV into men who have sex with men were found in Zhengzhou City, China
    • PubMed: 22236149
    • Li L, Sun G, Li T, Liu Y, Chen L et al. (2012) Multiple introductions of HIV into men who have sex with men were found in Zhengzhou City, China. AIDS Res Hum Retroviruses 28: 1147-1151. PubMed: 22236149.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 1147-1151
    • Li, L.1    Sun, G.2    Li, T.3    Liu, Y.4    Chen, L.5
  • 17
    • 77954208074 scopus 로고    scopus 로고
    • Genetic characterization of 13 subtype CRF01-AE near full-length genomes in Guangxi, China
    • doi:10.1089/aid.2010.0026. PubMed: 20528151
    • Li L, Liang S, Chen L, Liu W, Li H et al. (2010) Genetic characterization of 13 subtype CRF01-AE near full-length genomes in Guangxi, China. AIDS Res Hum Retroviruses 26: 699-704. doi:10.1089/aid.2010.0026. PubMed: 20528151.
    • (2010) AIDS Res Hum Retroviruses , vol.26 , pp. 699-704
    • Li, L.1    Liang, S.2    Chen, L.3    Liu, W.4    Li, H.5
  • 18
    • 77956202588 scopus 로고    scopus 로고
    • HLA-associated immune pressure on Gag protein in CRF01-AE-infected individuals and its association with plasma viral load
    • doi:10.1371/journal.pone.0011179. PubMed: 20567513
    • Gesprasert G, Wichukchinda N, Mori M, Shiino T, Auwanit W et al. (2010) HLA-associated immune pressure on Gag protein in CRF01-AE-infected individuals and its association with plasma viral load. PLOS ONE 5: e11179. doi:10.1371/journal.pone.0011179. PubMed: 20567513.
    • (2010) PLOS ONE , vol.5
    • Gesprasert, G.1    Wichukchinda, N.2    Mori, M.3    Shiino, T.4    Auwanit, W.5
  • 19
    • 70350536652 scopus 로고    scopus 로고
    • Impact of amino acid variations in Gag and protease of HIV type 1 CRF01-AE strains on drug susceptibility of virus to protease inhibitors
    • Jinnopat P, Isarangkura-na-ayuthaya P, Utachee P, Kitagawa Y, de Silva UC, et al. (2009) Impact of amino acid variations in Gag and protease of HIV type 1 CRF01-AE strains on drug susceptibility of virus to protease inhibitors. J Acquir Immune Defic Syndr 52: 320-328
    • (2009) J Acquir Immune Defic Syndr , vol.52 , pp. 320-328
    • Jinnopat, P.1    Isarangkura-Na-Ayuthaya, P.2    Utachee, P.3    Kitagawa, Y.4    De Silva, U.C.5
  • 21
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 22
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704. doi:10.1080/10635150390235520. PubMed: 14530136. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 23
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • DOI 10.1080/10635150600755453, PII T8083888667361
    • Anisimova M, Gascuel O (2006) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55: 539-552. doi:10.1080/10635150600755453. PubMed: 16785212. (Pubitemid 43922340)
    • (2006) Systematic Biology , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 26
    • 84879935612 scopus 로고    scopus 로고
    • Reconstructing the Timing and Dispersion Routes of HIV-1 Subtype B Epidemics in The Caribbean and Central America: A Phylogenetic Story
    • doi:10.1371/journal.pone.0069218. PubMed: 23874917
    • Pagán I, Holguín A (2013) Reconstructing the Timing and Dispersion Routes of HIV-1 Subtype B Epidemics in The Caribbean and Central America: A Phylogenetic Story. PLOS ONE 8: e69218. doi:10.1371/journal.pone. 0069218. PubMed: 23874917.
    • (2013) PLOS ONE , vol.8
    • Pagán, I.1    Holguín, A.2
  • 27
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161: 1307-1320. PubMed: 12136032. (Pubitemid 34831453)
    • (2002) Genetics , vol.161 , Issue.3 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 28
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • doi:10.1186/1471-2148-7-214. PubMed: 17996036
    • Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214. doi:10.1186/1471-2148-7-214. PubMed: 17996036.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 29
    • 84871547994 scopus 로고    scopus 로고
    • A New Migration Map of HIV-1 CRF07-BC in China: Analysis of Sequences from 12 Provinces over a Decade
    • doi:10.1371/journal.pone.0052373. PubMed: 23300654
    • Meng Z, Xin R, Zhong P, Zhang C, Abubakar YF et al. (2012) A New Migration Map of HIV-1 CRF07-BC in China: Analysis of Sequences from 12 Provinces over a Decade. PLOS ONE 7: e52373. doi:10.1371/journal.pone.0052373. PubMed: 23300654.
    • (2012) PLOS ONE , vol.7
    • Meng, Z.1    Xin, R.2    Zhong, P.3    Zhang, C.4    Abubakar, Y.F.5
  • 30
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • DOI 10.1007/BF02101694
    • Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial. DNA - J Mol Evol 22: 160-174. doi:10.1007/BF02101694. (Pubitemid 16227864)
    • (1985) Journal of Molecular Evolution , vol.22 , Issue.2 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 31
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • doi:10.1007/BF00160154. PubMed: 7932792
    • Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39: 306-314. doi:10.1007/BF00160154. PubMed: 7932792.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 32
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • doi:10.1371/journal.pbio.0040088. PubMed: 16683862
    • Drummond AJ, Ho SY, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4: e88. doi:10.1371/journal.pbio.0040088. PubMed: 16683862.
    • (2006) PLoS Biol , vol.4
    • Drummond, A.J.1    Ho, S.Y.2    Phillips, M.J.3    Rambaut, A.4
  • 33
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • DOI 10.1093/molbev/msi103
    • Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185-1192. doi:10.1093/molbev/msi103. PubMed: 15703244. (Pubitemid 40577756)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 34
    • 5344230543 scopus 로고    scopus 로고
    • Available Accessed 2012 April 20
    • Rambaut A, Drummond A (2007) Tracer v1.4. Available http:// beastbioedacuk/Tracer. Accessed 2012 April 20
    • (2007) Tracer V1.4
    • Rambaut, A.1    Drummond, A.2
  • 35
    • 84865386568 scopus 로고    scopus 로고
    • Evidence of multiple introductions of HIV-1 subtype C in Angola
    • doi:10.1016/j.meegid.2012.05.005. PubMed: 22634597
    • Afonso JM, Morgado MG, Bello G (2012) Evidence of multiple introductions of HIV-1 subtype C in Angola. Infect Genet Evol 12: 1458-1465. doi:10.1016/j.meegid.2012.05.005. PubMed: 22634597.
    • (2012) Infect Genet Evol , vol.12 , pp. 1458-1465
    • Afonso, J.M.1    Morgado, M.G.2    Bello, G.3
  • 36
    • 70350347718 scopus 로고    scopus 로고
    • A HIV-1 heterosexual transmission chain in Guangzhou, China: A molecular epidemiological study
    • doi:10.1186/1743-422X-6-148. PubMed: 19778458
    • Han Z, Leung TW, Zhao J, Wang M, Fan L et al. (2009) A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study. Virol J 6: 148. doi:10.1186/1743-422X-6-148. PubMed: 19778458.
    • (2009) Virol J , vol.6 , pp. 148
    • Han, Z.1    Leung, T.W.2    Zhao, J.3    Wang, M.4    Fan, L.5
  • 37
    • 84879864060 scopus 로고    scopus 로고
    • The rapidly expanding CRF01-AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s
    • doi:10.1097/QAD.0b013e328360db2d. PubMed: 23807275
    • Feng Y, He X, Jenny H, Li F, Li X et al. (2013) The rapidly expanding CRF01-AE epidemic in China is driven by multiple lineages of HIV-1 viruses introduced in the 1990s. AIDS 27: 1793-1802. doi:10.1097/QAD.0b013e328360db2d. PubMed: 23807275.
    • (2013) AIDS , vol.27 , pp. 1793-1802
    • Feng, Y.1    He, X.2    Jenny, H.3    Li, F.4    Li, X.5
  • 39
    • 84883455689 scopus 로고    scopus 로고
    • Identification of 3 Distinct HIV-1 Founding Strains Responsible for Expanding Epidemic Among Men Who Have Sex With Men in 9 Chinese
    • doi:10.1097/QAI.0b013e3182932210
    • Han X, An M, Zhang M, Zhao B, Wu H et al. (2013) Identification of 3 Distinct HIV-1 Founding Strains Responsible for Expanding Epidemic Among Men Who Have Sex With Men in 9 Chinese. Cities - J Acquir Immune Defic Syndr 64: 16-24. doi:10.1097/QAI.0b013e3182932210.
    • (2013) Cities - J Acquir Immune Defic Syndr , vol.64 , pp. 16-24
    • Han, X.1    An, M.2    Zhang, M.3    Zhao, B.4    Wu, H.5
  • 40
    • 84872848987 scopus 로고    scopus 로고
    • Phylogenetic and Temporal Dynamics of Human Immunodeficiency Virus Type 1 CRF01-AE in China
    • doi:10.1371/journal.pone.0054238. PubMed: 23365653
    • Ye J, Xin R, Yu S, Bai L, Wang W et al. (2013) Phylogenetic and Temporal Dynamics of Human Immunodeficiency Virus Type 1 CRF01-AE in China. PLOS ONE 8: e54238. doi:10.1371/journal.pone.0054238. PubMed: 23365653.
    • (2013) PLOS ONE , vol.8
    • Ye, J.1    Xin, R.2    Yu, S.3    Bai, L.4    Wang, W.5
  • 41
    • 84875457344 scopus 로고    scopus 로고
    • Emerging variability in HIV-1 genetics among recently infected individuals in Yunnan, China
    • doi:10.1371/journal.pone.0060101. PubMed: 23555898
    • Chen M, Yang L, Ma YL, Su Y, Yang C et al. (2013) Emerging variability in HIV-1 genetics among recently infected individuals in Yunnan, China. PLOS ONE 8: e60101. doi:10.1371/journal.pone.0060101. PubMed: 23555898.
    • (2013) PLOS ONE , vol.8
    • Chen, M.1    Yang, L.2    Ma, Y.L.3    Su, Y.4    Yang, C.5
  • 42
    • 0033200064 scopus 로고    scopus 로고
    • Genetic Similarity of HIV Type 1 Subtype E in a Recent Outbreak among Injecting Drug Users in Northern Vietnam to Strains in Guangxi Province of Southern China
    • PubMed: 10480629
    • Kayoko K, Teiichiro S, Shigero K, Hironori S, Kyoko N et al. (1999) Genetic Similarity of HIV Type 1 Subtype E in a Recent Outbreak among Injecting Drug Users in Northern Vietnam to Strains in Guangxi Province of Southern China. AIDS Res Hum Retroviruses, 15: 1157-1168. PubMed: 10480629.
    • (1999) AIDS Res Hum Retroviruses , vol.15 , pp. 1157-1168
    • Kayoko, K.1    Teiichiro, S.2    Shigero, K.3    Hironori, S.4    Kyoko, N.5
  • 43
    • 84873199025 scopus 로고    scopus 로고
    • Subtype CRF01-AE dominate the sexually transmitted human immunodeficiency virus type 1 epidemic in Guangxi. China
    • doi:10.1002/jmv.23360
    • Li L, Chen L, Liang S, Liu W, Li T et al. (2013) Subtype CRF01-AE dominate the sexually transmitted human immunodeficiency virus type 1 epidemic in Guangxi. China. J - Journal of Med Virol 85: 388-395. doi:10.1002/jmv.23360.
    • (2013) J - Journal of Med Virol , vol.85 , pp. 388-395
    • Li, L.1    Chen, L.2    Liang, S.3    Liu, W.4    Li, T.5
  • 45
    • 28744452026 scopus 로고    scopus 로고
    • Analysis for epidemic trend of acquired immunodeficiency syndrome in Yunnan Province of China
    • PubMed: 15498242
    • Lu L, Jia MH, Zhang XB, Luo HB, Ma YL et al. (2004) Analysis for epidemic trend of acquired immunodeficiency syndrome in Yunnan Province of China. Zhonghua Yu Fang Yi Xue Za Zhi 38: 309-312. PubMed: 15498242.
    • (2004) Zhonghua Yu Fang Yi Xue Za Zhi , vol.38 , pp. 309-312
    • Lu, L.1    Jia, M.H.2    Zhang, X.B.3    Luo, H.B.4    Ma, Y.L.5


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