Emerging Variability in HIV-1 Genetics among Recently Infected Individuals in Yunnan, China

PLoS ONE

Volumn 8, Issue 3, 2013, Pages

  Chen, Min ^a   Yang, Li ^a   Ma, Yanling ^a   Su, Yingzhen ^a   Yang, Chaojun ^a   Luo, Hongbing ^a   Chen, Huichao ^a   Chen, Ling ^a   Yan, Wenyun ^a   Shi, Yuhua ^a   Jia, Manhong ^a   Lu, Lin ^a,b  

^a YUNNAN PROVINCIAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b KUNMING MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; CHILD; CHINA; CROSS-SECTIONAL STUDY; ENVELOPE GENE; EPIDEMIC; FEMALE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HETEROSEXUALITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; INTRAVENOUS DRUG ABUSE; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; PREVALENCE; SCHOOL CHILD; SEXUAL TRANSMISSION; STRUCTURAL GENE; UNINDEXED SEQUENCE; VIRAL GENETICS;

CHINA; CROSS-SECTIONAL STUDIES; GENES, ENV; GENES, GAG; GENOTYPE; HIV INFECTIONS; HIV-1; HUMANS; PHYLOGENY;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 84875457344     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060101     Document Type: Article

References (38)

1. Lu L, Jia M, Ma Y, Yang L, Chen Z, et al. (2008) The changing face of HIV in China. Nature 455: 609-611.
2. Shao Y, Zhao Q, Wang B, Chen Z, Su L, et al. (1994) Sequence analysis of HIV env gene among HIV infected IDUs in Yunnan epidemic area of China. Chin J Virol 10: 291-299.
3. Graf M, Shao Y, Zhao Q, Seidl T, Kostler J, et al. (1998) Cloning and characterization of a virtually full-length HIV type 1 genome from a subtype B'-Thai strain representing the most prevalent B-clade isolate in China. AIDS Res Hum Retroviruses 14: 285-288.
4. Weniger BG, Takebe Y, Ou CY, Yamazaki S, (1994) The molecular epidemiology of HIV in Asia. AIDS 8 (Suppl 2):: S13-28.
5. Luo CC, Tian C, Hu DJ, Kai M, Dondero T, et al. (1995) HIV-1 subtype C in China. Lancet 345: 1051-1052.
6. Shao Y, Guan Y, Zhao Q, Zeng Y, Zhang J, et al. (1996) Genetic variation and molecular epidemiology of the Ruily HIV-1 strains of Yunnan in 1995. Chin J Virol 12: 9-17.
7. Cheng H, Zhang J, Capizzi J, Young NL, Mastro TD, (1994) HIV-1 subtype E in Yunnan, China. Lancet 344: 953-954.
8. Jia M, Luo H, Ma Y, Wang N, Smith K, et al. (2010) The HIV epidemic in Yunnan Province, China, 1989-2007. J Acquir Immune Defic Syndr 53 (Suppl 1):: S34-40.
9. Su L, Graf M, Zhang Y, von Briesen H, Xing H, et al. (2000) Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China. J Virol 74: 11367-11376.
10. Piyasirisilp S, McCutchan FE, Carr JK, Sanders-Buell E, Liu W, et al. (2000) A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant. J Virol 74: 11286-11295.
11. Qiu Z, Xing H, Wei M, Duan Y, Zhao Q, et al. (2005) Characterization of five nearly full-length genomes of early HIV type 1 strains in Ruili city: implications for the genesis of CRF07_BC and CRF08_BC circulating in China. AIDS Res Hum Retroviruses 21: 1051-1056.
12. Tee KK, Pybus OG, Li XJ, Han X, Shang H, et al. (2008) Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia. J Virol 82: 9206-9215.
13. Beyrer C, Razak MH, Lisam K, Chen J, Lui W, et al. (2000) Overland heroin trafficking routes and HIV-1 spread in south and south-east Asia. AIDS 14: 75-83.
14. McClutchan FE, Carr JK, Murphy D, Piyasirisilp S, Gao F, et al. (2002) Precise mapping of recombination breakpoints suggests a common parent of two BC recombinant HIV type 1 strains circulating in China. AIDS Res Hum Retroviruses 18: 1135-1140.
15. Ma YL, Zhang Y, Lu L, Yang L, Shi YH, et al. (2008) [The analysis of human immunodeficiency virus-1 subtypes in Yunnan province]. Zhonghua Yu Fang Yi Xue Za Zhi 42: 892-894.
16. Zhang Y, Lu L, Ba L, Liu L, Yang L, et al. (2006) Dominance of HIV-1 subtype CRF01_AE in sexually acquired cases leads to a new epidemic in Yunnan province of China. PLoS Med 3: e443.
17. Yang R, Xia X, Kusagawa S, Zhang C, Ben K, et al. (2002) On-going generation of multiple forms of HIV-1 intersubtype recombinants in the Yunnan Province of China. AIDS 16: 1401-1407.
18. Parekh BS, Kennedy MS, Dobbs T, Pau CP, Byers R, et al. (2002) Quantitative detection of increasing HIV type 1 antibodies after seroconversion: a simple assay for detecting recent HIV infection and estimating incidence. AIDS Res Hum Retroviruses 18: 295-307.
19. Jiang Y, Wang M, Ni M, Duan S, Wang Y, et al. (2007) HIV-1 incidence estimates using IgG-capture BED-enzyme immunoassay from surveillance sites of injection drug users in three cities of China. AIDS 21 (Suppl 8):: S47-51.
20. Calypte HIV-1 BED incidence EIA (IgG-Capture HIV-EIA): enzyme immunoassay for population estimates of HIV-1 incidence. (2005) Portland, Oregon: Calypte Biomedical Corporation.
21. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
22. He X, Xing H, Ruan Y, Hong K, Cheng C, et al. (2012) A Comprehensive Mapping of HIV-1 Genotypes in Various Risk Groups and Regions across China Based on a Nationwide Molecular Epidemiologic Survey. PLoS One 7: e47289.
23. Zeng H, Sun Z, Liang S, Li L, Jiang Y, et al. (2012) Emergence of a New HIV Type 1 CRF01_AE Variant in Guangxi, Southern China. AIDS Res Hum Retroviruses 28: 1352-1356.
24. Yu XF, Wang X, Mao P, Wang S, Li Z, et al. (2003) Characterization of HIV type 1 heterosexual transmission in Yunnan, China. AIDS Res Hum Retroviruses 19: 1051-1055.
25. Yao Y, Wang N, Chu J, Ding G, Jin X, et al. (2009) Sexual behavior and risks for HIV infection and transmission among male injecting drug users in Yunnan, China. Int J Infect Dis 13: 154-161.
26. Liu Y, Li L, Yang S, Bao Z, Li H, et al. (2011) Identification and characterization of two new HIV type 1 Unique (B/C) recombinant forms in China. AIDS Res Hum Retroviruses 27: 445-451.
27. Chen L, Yang S, Li J, Liu Y, Wang Z, et al. (2011) Near full-length genomic characterization of a novel HIV type 1 CRF07_ BC/CRF08_ BC recombinant strain from Yunnan, China. AIDS Res Hum Retroviruses 27: 693-699.
28. Li L, Chen L, Yang S, Liu Y, Li J, et al. (2010) Near full-length sequence analysis of a novel HIV-1 C/CRF01_AE recombinant variant from Yunnan, China. AIDS Res Hum Retroviruses 26: 1255-1259.
29. Yang R, Kusagawa S, Zhang C, Xia X, Ben K, et al. (2003) Identification and characterization of a new class of human immunodeficiency virus type 1 recombinants comprised of two circulating recombinant forms, CRF07_BC and CRF08_BC, in China. J Virol 77: 685-695.
30. Li XJ, Kusagawa S, Xia X, Yang C, Wang Q, et al. (2005) Molecular epidemiology of the heterosexual HIV-1 transmission in Kunming, Yunnan Province of China suggests origin from the local IDU epidemic. AIDS Res Hum Retroviruses 21: 977-980.
31. Yu XF, Chen J, Shao Y, Beyrer C, Lai S, (1998) Two subtypes of HIV-1 among injection-drug users in southern China. Lancet 351: 1250.
32. Yu XF, Chen J, Shao Y, Beyrer C, Liu B, et al. (1999) Emerging HIV infections with distinct subtypes of HIV-1 infection among injection drug users from geographically separate locations in Guangxi Province, China. J Acquir Immune Defic Syndr 22: 180-188.
33. Laeyendecker O, Zhang GW, Quinn TC, Garten R, Ray SC, et al. (2005) Molecular epidemiology of HIV-1 subtypes in southern China. J Acquir Immune Defic Syndr 38: 356-362.
34. Garten RJ, Zhang J, Lai S, Liu W, Chen J, et al. (2005) Coinfection with HIV and hepatitis C virus among injection drug users in southern China. Clin Infect Dis 41 (Suppl 1):: S18-24.
35. Meng Z, Xin R, Zhong P, Zhang C, Abubakar YF, et al. (2012) A New Migration Map of HIV-1 CRF07_BC in China: Analysis of Sequences from 12 Provinces over a Decade. PLoS One 7: e52373.
36. Li Z, He X, Li F, Yang Y, Wang Q, et al. (2012) Tracing the origin and history of HIV-1 subtype B' epidemic in China by near full-length genome analyses. AIDS.
37. Liao H, Tee KK, Hase S, Uenishi R, Li XJ, et al. (2009) Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam. Virology 391: 51-56.
38. Pang W, Zhang C, Duo L, Zhou YH, Yao ZH, et al. (2012) Extensive and complex HIV-1 recombination between B', C and CRF01_AE among IDUs in Northern Myanmar. AIDS.