On the transition of genetic differentiation from isolation to panmixia: What we can learn from G S T and D

Theoretical Population Biology

Volumn 93, Issue , 2014, Pages 75-84

  Alcala, Nicolas ^a   Goudet, Jérôme ^a   Vuilleumier, Séverine ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

Author keywords

D; Genetic differentiation; Genetic diversity

Indexed keywords

ALLELE; GENETIC DIFFERENTIATION; MATING BEHAVIOR; MUTATION; PARAMETERIZATION; POPULATION GENETICS; SIGNALING;

ARTICLE; GENE FREQUENCY; GENETIC VARIABILITY; HUMAN; POPULATION GENETICS;

GENETIC DIFFERENTIATION; GENETIC DIVERSITY;

GENE FREQUENCY; GENETICS, POPULATION; HUMANS;

EID: 84896537067     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2014.02.003     Document Type: Article

References (34)

1. Balloux F., Brünner H., Lugon-Moulin N., Hausser J., Goudet J. Microsatellites can be misleading: an empirical and simulation study. Evolution 2000, 54:1414-1422.
2. Beaumont M.A., Zhang W., Balding D.J. Approximate bayesian computation in population genetics. Genetics 2002, 162:2025-2035.
3. Charlesworth B. Measures of divergence between populations and the effect of forces that reduce variability. Mol. Biol. Evol. 1998, 15:538-543.
4. Crow J.F. Basic Concepts in Population, Quantitative, and Evolutionary Genetics 1986, WH Freeman and Company.
5. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
6. G S T but not all of statistics!. Mol. Ecol. 2010, 19:3845-3852.
7. Golub G., Kahan W. Calculating the singular values and pseudo-inverse of a matrix. J. Soc. Ind. Appl. Math. Ser. B Numer. Anal. 1965, 2:205-224.
8. Gregorius H.-R. Linking diversity and differentiation. Diversity 2010, 2:370-394.
9. Hedrick P.W. A standardized genetic differentiation measure. Evolution 2005, 59:1633-1638.
10. Hedrick P.W. Perspective: highly varuable loci and their interpretation in evolution and conservation. Evolution 1999, 53:313-318.
11. D E S T and GST': how wrong have we been?. Mol. Ecol 2009.
12. F S T. Nature Rev. Genet. 2009, 10:639-650.
13. F S T and the frequency of the most frequent allele. Genetics 2012.
14. G S T and its relatives do not measure differentiation. Mol. Ecol. 2008, 17:4015-4026.
15. G S T: Response to Heller and Siegismund (2009) and Ryman and Leimar (2009). Mol. Ecol. 2009, 18:2088-2091.
16. Kimura M., Crow J.F. The number of alleles that can be maintained in a finite population. Genetics 1964, 49:725-738.
17. Kronholm I., Loudet O., de Meaux J. Influence of mutation rate on estimators of genetic differentiation-lessons from Arabidopsis thaliana. BMC Genet. 2010, 11:33.
18. Maruyama T. Effective number of alleles in a subdivided population. Theor. Popul. Biol. 1970, 1:273-306.
19. Maynard Smith J. Population size, polymorphism, and the rate of non-darwinian evolution. Amer. Nat. 1970, 104:231-237.
20. F S T and related measures. Mol. Ecol. Resour. 2011, 11:5-18.
21. Mills L.S., Allendorf F.W. The one-migrant-per-generation rule in conservation and management. Conserv. Biol. 1996, 10:1509-1518.
22. Nagylaki T. Fixation indices in subdivided populations. Genetics 1998, 148:1325-1332.
23. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 1973, 70:3321-3323.
24. Ryman N., Leimar O. Effect of mutation on genetic differentiation among nonequilibrium populations. Evolution 2008, 62:2250-2259.
25. ST is still a useful measure of genetic differentiation-a comment on Jost's D. Mol. Ecol. 2009, 18:2084-2087. Discussion 2088-91.
26. Slatkin M. Rare alleles as indicators of gene flow. Evolution 1985, 39:53-65.
27. Slatkin M. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 1993, 47:264-279.
28. Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics 1995, 139:457-462.
29. Spieth P.T. Gene flow and genetic differentiation. Genetics 1974, 78:961-965.
30. Wang J. On the measurements of genetic differentiation among populations. Genet. Res. 2012, 94:275-289.
31. Weir B.S., Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38:1358-1370.
32. Whitlock M.C. Fixation probability and time in subdivided populations. Genetics 2003, 164:767-779.
33. ST. Mol. Ecol. 2011, 20:1083-1091.
34. Wright S. The genetical structure of populations. Ann. Eugen. 1951, 15:323-354.