Brain blood vessel segmentation using line-shaped profiles

Physics in Medicine and Biology

Volumn 58, Issue 22, 2013, Pages 8041-8061

  Babin, Danilo ^a   Pižurica, Aleksandra ^a   De Vylder, Jonas ^a   Vansteenkiste, Ewout ^a   Philips, Wilfried ^a  

^a GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

TREES (MATHEMATICS);

ARTERIOVENOUS MALFORMATION; BRAIN BLOOD VESSELS; CEREBRAL ANEURYSMS; CEREBRAL BLOOD VESSELS; CLINICAL APPLICATION; GEOMETRIC INFORMATION; LARGE BLOOD VESSELS; SEGMENTATION TECHNIQUES;

BLOOD VESSELS;

ANGIOGRAPHY; ARTICLE; BLOOD VESSEL; BRAIN; IMAGE PROCESSING; IMAGE QUALITY; METHODOLOGY; THREE DIMENSIONAL IMAGING; VASCULARIZATION;

ANGIOGRAPHY; BLOOD VESSELS; BRAIN; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; PHANTOMS, IMAGING;

EID: 84896504874     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/58/22/8041     Document Type: Article

References (42)

1. Antiga L and Steinman D 2006 VMTK-Vascular modeling toolkit (www.vmtk.org)
2. Babin D, De Bock J, Pizurica A and Philips W 2008 The shortest path calculation between points of interest in 3-D MRI images of blood vessels SAFE'08: Proc. 11th Annu. Workshop on Semiconductor Advances for Future Electronics and Sensors (STW Technology Foundation) pp 295-8
3. Babin D, Pižurica A, Bellens R, De Bock J, Shang Y, Goossens B, Vansteenkiste E and Philips W 2012 Generalized pixel profiling and comparative segmentation with application to arteriovenous malformation segmentation Med. Image Anal. 16 991-1002
4. Babin D, Vansteenkiste E, Pižurica A and Philips W 2009 Segmentation and length measurement of the abdominal blood vessels in 3-D MRI images EMBC'09: Proc. IEEE Annu. Int. Conf. on Engineering in Medicine and Biology Society pp 4399-402
5. Bellens R, Gautama S, Martinez-Fonte L, Philips W, Chan J C W and Canters F 2008 IEEE Trans. Geosci. Remote Sens. 46 2803-13
6. Berger M O, Anxionnat R, Kerrien E, Picard L and Söderman M 2008 A methodology for validating a 3D imaging modality for brain AVM delineation: application to 3DRA Comput. Med. Imag. Graph. 32 544-53
7. Bullitt E, Aylward S, Bernard E and Gerig G 2001 Computer-assisted visualization of arteriovenous malformations on the home PC Neurosurgery 48 576-83 (Pubitemid 32201191)
8. Carrillo J, Orkisz M and Hoyos M 2005 Extraction of 3D vascular tree skeletons based on the analysis of connected components evolution Computer Analysis of Images and Patterns (Lecture Notes in Computer Science vol 3691) ed A Gagalowicz and W Philips (Berlin: Springer) pp 604-11
9. Caselles V, Kimmel R and Sapiro G 1995 Geodesic active contours Proc. Conf. 5th Int. Computer Vision pp 694-9
10. Castro M A and Cebral J R 2007 Computational fluid dynamics modeling of intracranial aneurysms: effect of parent artery segmentation on intra-aneurysmal hemodynamics Am. J. Neuroradiol. 27 1703-9 (Pubitemid 44413554)
11. Cebral J R, Castro M A, Appanaboyina S, Putman C M, Millan D and Frangi A F 2005 Efficient pipeline for image-based patient-specific analysis of cerebral aneurysm hemodynamics: technique and sensitivity IEEE Trans. Med. Imaging 24 457-67 (Pubitemid 40538203)
12. Coenen V, Dammert S, Reinges M, Mull M, Gilsbach J and Rohde V 2005 Image-guided microneurosurgical management of small cerebral arteriovenous malformations: the value of navigated computed tomographic angiography International Neuroradiology (Berlin: Springer) pp 66-72 (Pubitemid 40260318)
13. Coste E, Gibon D, Leclercq X, Verdonck B, Vausseur C and Rousseau J 2001 3D reconstruction of the encapsulating contour of arteriovenous malformations for radiosurgery using digital subtraction angiography Int. J. Radiat. Oncol. Biol. Phys. 50 247-55 (Pubitemid 32318583)
14. De Bock J and Philips W 2010 Fast and memory efficient 2D connected components using linked lists of line segments IEEE Trans. Image Process. 19 3222-31
15. Dice L R 1945 Measures of the amount of ecologic association between species Ecology 26 297-302
16. Dokladal P, Lohou C, Perroton L and Bertrand G 1999 A new thinning algorithm and its application to extraction of blood vessels Proc. Biomedsim'99 (ESIEE, Noisy-le-Grand, France,) pp 32-37
17. Forkert N, Säring D, Wenzel K, Illies T, Fiehler J and Handels H 2009 Fuzzy-based extraction of vascular structures from time-of-flight MR images Medical Informatics in a United and Healthy Europe (Amsterdam, The Netherlands: IOS Press) pp 816-20
18. Frangi R F, Niessen W J, Vincken K L and Viergever M A 1998 Multiscale vessel enhancement filtering (Berlin: Springer) pp 130-7
19. Hoi Y, Meng H, Woodward S H, Bendok B R, Hanei R A, Guterman L R and Hopkins L N 2004 Effects of arterial geometry on aneurysm growth: three dimensional computational fluid dynamics study J. Neurosurg. 101 676-81 (Pubitemid 43186429)
20. Jackowski M, Papademetris X, Dobrucki L, Sinusas A and Staib L 2005 Characterizing vascular connectivity from microCT images MICCAI 2005: Medical Image Computing and Computer-Assisted Intervention (Lecture Notes in Computer Science vol 3750) ed J Duncan and G Gerig (Berlin: Springer) pp 701-8 (Pubitemid 43828426)
21. Kirbas C and Quek F K H 2004 A review of vessel extraction techniques and algorithms ACM Comput. Surv. 36 81-121 (Pubitemid 43891429)
22. Lesage D, Angelini E D, Bloch I and Funka-Lea G 2009 A review of 3D vessel lumen segmentation techniques: models, features and extraction schemes Med. Image Anal. 13 819-45
23. Lorigo L, Faugeras O, Grimson W, Keriven R, Kikinis R, Nabavi A and Westin C F 2001 CURVES: Curve evolution for vessel segmentation Med. Image Anal. 5 195-206 (Pubitemid 35282804)
24. Nain D, Yezzi A and Turk G 2004 Vessel segmentation using a shape driven flow MICCAI 2004: Proc. Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (St. Malo, France,) pp 51-59 (Pubitemid 40787367)
25. Okada T et al 2007 Diffusion tensor fiber tractography for arteriovenous malformation: quantitative analyses to evaluate the corticospinal tract and optic radiation Am. J. Neuroradiol. 28 1107-13 (Pubitemid 46984553)
26. Papademetris X, Jackowski M, Rajeevan N, Okuda H, Constable R and Staib L 2005 Bioimage suite: an integrated medical image analysis suite (New Haven, CT: Department of Diagnostic Radiology, Yale School of Medicine)
27. Passat N, Ronse C, Baruthio J, Armspach J P and Maillot C 2006 Magnetic resonance angiography: from anatomical knowledge modeling to vessel segmentation Med. Image Anal. 10 259-74 (Pubitemid 43174978)
28. Passat N, Ronse C, Baruthio J, Armspach J P, Maillot C and Jahn C 2005 Region-growing segmentation of brain vessels: an atlas-based automatic approach J. Magn. Reson. Imaging 21 715-25 (Pubitemid 40770863)
29. Pechaud M, Keriven R and Peyre G 2009 Extraction of tubular structures over an orientation domain CVPR '09: IEEE Conf. Computer Vision and Pattern Recognition pp 336-42
30. Pesaresi M and Benediktsson J A 2001 A new approach for the morphological segmentation of high-resolution satellite imagery IEEE Trans. Geosci. Remote Sens. 39 309-20 (Pubitemid 32270994)
31. Piccinelli M, Veneziani A, Steinman D A, Remuzzi A and Antiga L 2009 Framework for geometric analysis of vascular structures: application to cerebral aneurysms IEEE Trans. Med. Imaging 28 1141-55
32. Pieper S, Lorensen B, Schroeder W and Kikinis R 2006 The NA-MIC Kit: ITK, VTK, pipelines, grids and 3D slicer as an open platform for the medical image computing community 3rd IEEE Int. Symp. on Biomedical Imaging: Nano to Macro pp 698-701 (Pubitemid 44732412)
33. Plaza A, Martinez P, Perez R and Plaza J 2004 A new approach to mixed pixel classification of hyperspectral imagery based on extended morphological profiles Pattern Recognit. 37 1091-116 (Pubitemid 38549813)
34. Qian X, Brennan M, Dione D, Dobrucki W, Jackowski M, Breuer C, Sinusas A and Papademetris X 2009 A non-parametric vessel detection method for complex vascular structures Med. Image Anal. 13 49-61
35. Säring D, Fiehler J, Forkert N, Piening M and Handels H 2007 Visualization and analysis of cerebral arteriovenous malformation combining 3D and 4D MR image sequences Int. J. Comput. Assist. Radiol. Surg. 2 75-79
36. Schroeder W, Martin K M and Lorensen W E 1998 The visualization toolkit: an object-oriented approach to 3D graphics The Visualization Toolkit: An Object-Oriented Approach to 3D Graphics 2nd edn (Englewood Cliffs, NJ: Prentice-Hall)
37. Shang Y, Deklerck R, Nyssen E, Markova A, de Mey J, Yang X and Sun K 2011 Vascular active contour for vessel tree segmentation IEEE Trans. Biomed. Eng. 58 1023-32
38. Shang Y, Yang X, Zhu L, Deklerck R and Nyssen E 2008 Region competition based active contour for medical object extraction Comput. Med. Imaging Graph. 32 109-17
39. Söderman M, Karlsson B, Launnay L, Thuresson B and Ericson K 2000 Volume measurements of cerebral arteriovenous malformations from angiography Neuroradiology 42 697-702
40. Wesarg S and Firle E A 2004 Segmentation of vessels: the corkscrew algorithm Proc. SPIE 3 1609-20
41. Yaniv Z and Cleary K 2006 Image guided procedures: a review Computer Aided Interventions and Medical Robotics vol 3 Technical Report CAIMR TR-2006-3
42. Zhang X, Shirato H, Aoyama H, Ushikoshi S, Nishioka T, Zhang D and Miyasaka K 2003 Clinical significance of 3D reconstruction of arteriovenous malformation using digital subtraction angiography and its modification with CT information in stereotactic radiosurgery Int. J. Radiat. Oncol. Biol. Phys. 57 1392-9 (Pubitemid 37443981)