An integrated microfluidic platform for rapid detection and subtyping of influenza viruses from clinical samples

Microfluidics and Nanofluidics

Volumn 16, Issue 3, 2014, Pages 501-512

  Tai, Chien Hsuan ^a   Tsai, Yi Che ^a   Wang, Chih Hung ^b   Ho, Tzong Shiann ^c   Chang, Chih Peng ^a   Lee, Gwo Bin ^b  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY HOSPITAL   (Taiwan)

Author keywords

Clinical specimen; Influenza virus; Magnetic bead; Microfluidics; Molecular diagnosis; Subtyping

Indexed keywords

DIAGNOSIS; FLUIDIC DEVICES; FORMAL LANGUAGES; MICROFLUIDICS; MOLECULAR BIOLOGY; RNA;

CLINICAL SPECIMEN; INFLUENZA VIRUS; MAGNETIC BEADS; MOLECULAR DIAGNOSIS; SUBTYPINGS;

VIRUSES;

EID: 84896404026     PISSN: 16134982     EISSN: 16134990     Source Type: Journal    
DOI: 10.1007/s10404-013-1249-y     Document Type: Conference Paper

References (47)

1. Akin A, Wu CC, Lin TL (1998) A comparison of two RNA isolation methods for double-stranded RNA of infectious bursal disease virus. J Virol Methods 74:179-184
2. Alexander DJ, Assaad F, Bachmann PA, Bögel K, Chu H, Easterday BC, Hannoun CM, Kaplan MM, Laver WG, Ottis K, Romvary JJ, Scholtissek C, Shortridge KF, Slepuskin AN, Tumova B, Webster RG (1981) The ecology of influenza viruses: a WHO memorandum. Bull World Health Organ 59(6):869-873
3. Atmar RL, Baxter BD, Dominguez EA, Taber LH (1996) Comparison of reverse transcription-PCR with tissue culture and other rapid diagnostic assays for detection of type A influenza virus. J Clin Microbiol 34(10):2604-2606
4. Auroux PA, Iossifidi D, Reyes DR, Manz A (2002) Micro total analysis systems. 2. Analytical standard operations and applications. Anal Bioanal Chem 74:2637-2652
5. Boonsuk P, Payungporn S, Chieochansin T, Samransamruajkit R, Amonsin A, Songserm T, Chaisingh A, Chamnanpood P, Chutinimitkul S, Theamboonlers A, Poovorawan Y (2008) Detection of influenza virus types A and B and type A subtypes (H1, H3, and H5) by multiplex polymerase chain reaction. Tohoku J Exp Med 215(3):247-255
6. Cao QF, Meng YP, Sun Y (2003) An effective quick method for total RNA extraction in Malus. J Agric Biotechnol 11(4):428-429
7. Chambers TM, Shortridge KF, Li PH, Powell DG, Watkins KL (1994) Rapid diagnosis of equine influenza by the Directigen FLU-A enzyme immunoassay. Vet Rec 135(12):275-279
8. Chirgwin JM, Przybyla AE, MacDonald RJ, Rutter WJ (1979) Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18:5294-5299
9. Choi JW, Ahn CH, Bhansali S, Henderson HT (2000) A new magnetic bead-based, filterless bio-separator with planar electromagnet surfaces for integrated bio-detection systems. Sens Actuators B Chem 68:34-39
10. Chomczynski P (1993) A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques 15:532-537
11. Chomczynski P, Mackey K (1995) Short technical report. Modification of the TRIZOL reagent procedure for isolation of RNA from Polysaccharide-and proteoglycan-rich sources. Biotechniques 19(6):942-945
12. Cox NJ, Subbarao K (2000) Global epidemiology of influenza: past and present. Annu Rev Med 51:407-421
13. Faix DJ, Sherman SS, Waterman SH (2009) Rapid-test sensitivity for novel swine-origin influenza A (H1N1) virus in humans. New Engl J Med 361:728-729
14. Gavin P, Thomson RB Jr (2003) Review of rapid diagnostic tests for influenza. Clin Appl Immunol Rev 4(3):151-172
15. Gijs MAM (2004) Magnetic bead handling on-chip: new opportunities for analytical applications. Microfluid Nanofluid 1:22-40
16. Grodzinski P, Liu R, Yang J, Ward MD (2004) Microfluidic system integration in sample preparation chip-sets-a summary. In: Proceedings of the 26th annual international conference of the IEEE EMBS, pp 2615-2618
17. Hawkins TL, O'Connor-Morin T, Roy A, Santillan C (1994) DNA purification and isolation using a solid-phase. Nucleic Acids Res 22(21):4543-4544
18. Hindiyeh M, Levy V, Azar R, Varsano N, Regev L, Shalev Y, Grossman Z, Mendelson E (2005) Evaluation of a multiplex real-time reverse transcriptase PCR assay for detection and differentiation of influenza viruses A and B during the 2001-2002 influenza season in Israel. J Clin Microbiol 43(2):589-595
19. Huang Y, Mather EL, Bell JL, Madou M (2002) MEMS-based sample preparation for molecular diagnostics. Anal Bioanal Chem 372:49-65
20. Hurt AC, Baas C, Deng YM, Roberts S, Kelso A, Barr IG (2009) Performance of influenza rapid point-of-care tests in the detection of swine lineage A (H1N1) influenza viruses. Influenza Other Respi Viruses 3(4):171-176
21. Johnson NP, Mueller J (2002) Updating the accounts: global mortality of the 1918-1920. Spanish influenza pandemic. Bull Hist Med 76(1):105-115
22. Jungell-Nortamo A, Syvänen AC, Luoma P, Söderlund H (1988) Nucleic acid sandwich hybridization: enhanced reaction rate with magnetic microparticles as carriers. Mol Cell Probes 2(4):281-288
23. Kamol S, Sunchai P, Thaweesak C, Rujipat S, Alongkorn A, Thaweesak S, Arunee C, Pornchai C, Salin C, Apiradee T, Yong P (2008) Typing (A/B) and subtyping (H1/H3/H5) of influenza A viruses by multiplex real-time RT-PCR assays. J Virol Methods 152:25-31
24. Li JH, Tang CH, Song CY, Chen MJ, Feng ZY, Pan YJ (2006) A simple, rapid and effective method for total RNA extraction from Lentinula edodes. Biotechnol Lett 28(15):1193-1197
25. Li SK, Lin CH, Chen YT, Lee LH, Liu HJ (2008) Development of a reliable assay protocol for identification of diseases (RAPID)-bioactive amplification with probing for detection of avian reovirus. J Virol Methods 149(1):35-41
26. Lien KY, Liu CJ, Lin YC, Kuo PL, Lee GB (2009) Extraction of genomic DNA and detection of single nucleotide polymorphism genotyping utilizing an integrated magnetic bead-based microfluidic platform. Microfluid Nanofluid 6:539-555
27. Liu CJ, Lien KY, Weng CY, Shin JW, Chang TY, Lee GB (2009) Magnetic-bead-based microfluidic system for ribonucleic acid extraction and reverse transcription processes. Biomed Microdevices 11:339-350
28. Matsuzaki Y, Katsushima N, Nagai Y, Shoji M, Itagaki T, Sakamoto M, Kitaoka S, Mizuta K, Nishimura H (2006) Clinical features of influenza C virus infection in children. J Infect Dis 193(9):1229-1235
29. McCalla SE, Ong C, Sarma A, Opal SM, Artenstein AW, Tripathi A (2012) A simple method for amplifying RNA targets (SMART). J Mol Diagn 14(4):328-335
30. Medina RA, Garcia-Sastre A (2011) Influenza A viruses: new research developments. Rev Microbiol 9:590-603
31. Payungporn S, Chutinimitkul S, Chaisingh A, Damrongwantanapokin S, Buranathai C, Amonsin A, Theamboonlers A, Poovorawan Y (2006) Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection. J Virol Methods 1131:143-147
32. Siavashi MR, Taherkhani H, Rezaei K, Deligani MRR, Assmar M (2005) Comparison of Dot-ELISA and sandwich ELISA diagnostic tests in detection of human hydatidosis. Iran Biomed J 9(2):91-94
33. Simonsen L, Clarke MJ, Williamson GD, Stroup DF, Arden NH, Schonberger LB (1997) The impact of influenza epidemics on mortality: introducing a severity index. Am J Public Health 87(12):1944-1950
34. Smith AB, Mock B, Meleau R, Colarusso P, Willis DE (2003) Rapid detection of influenza A and B viruses in clinical specimens by Light Cycler real time RT-PCR. J Clin Virol 28(1):51-58
35. Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y, Rambaut A (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459(7250):1122-1125
36. Thontiravong A, Payungporn S, Keawcharoen J, Chutinimitkul S, Wattanodorn S, Damrongwatanapokin S, Chaisingh A, Theamboonlers A, Poovorawan Y, Oraveerakul K (2007) The single-step multiplex reverse transcription- polymerase chain reaction assay for detecting H5 and H7 avian influenza A viruses. Tohoku J Exp Med 211(1):75-79
37. Vasoo S, Stevens J, Singh K (2009) Rapid antigen tests for diagnosis of pandemic (swine) influenza A/H1N1. Clin Infect Dis 49:1090-1093
38. Vilkner T, Janasek D, Manz A (2004) Micro total analysis systems. Recent developments. Anal Chem 76:3373-3385
39. Wang CH, Lien KY, Hung LY, Lei HY, Lee GB (2012) Integrated microfluidic system for multiple subtyping of influenza virus by using molecular diagnosis approach. Microfluid Nanofluid 13(1):113-123
40. Webster RG, Bean WJ, Gorman OT (1992) Evolution and ecology of influenza-A virus. Rev Microbiol 56(1):152-179
41. Weng CH, Lien KY, Yang SY, Lee GB (2011a) A suction-type, pneumatic microfluidic device for liquid transport and mixing. Microfluid Nanofluid 10:301-310
42. Weng CH, Lien KY, Yang SY, Lee GB (2011b) A suction-type, pneumatic microfluidic device for liquid transport and mixing. Microfluid Nanofluid 10:301-310
43. Witthaya P, Piyathida P, Jarika M, Yong P, Sunchai P (2011) Molecular detection and subtyping of human influenza A virus based on multiplex RT-PCR assay. Int Res J Biotech 2(5):085-092
44. Yang YN, Hsiung SK, Lee GB (2009) A pneumatic micropump incorporated with a normally closed valve capable of generating a high pumping rate and a high back pressure. Microfluid Nanofluid 6:823-833
45. Zhang C, Xing D (2010) Single-molecule DNA amplification and analysis using microfluidics. Chem Rev 110:4910-4947
46. Zheng HJ, Tao ZH, Cheng WF, Piessens WF (1990) Comparison of dot-ELISA with sandwich ELISA for the detection of circulating antigens in patients with bancroftian filariasis. Am J Trop Med Hygiene 42:546-549
47. Zhu X, Yu W, McBride R, Li Y, Chen LM, Donis RO, Tong S, Paulson JC, Wilson LA (2012) Hemagglutinin homologue from H17N10 bat influenza virus exhibits divergent receptor-binding and pH-dependent fusion activities. Proc Natl Acad Sci 110(4):1458-1463