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Volumn , Issue SUPL.43, 2013, Pages

LipidXplorer: Software for quantitative shotgun lipidomics compatible with multiple mass spectrometry platforms

Author keywords

Lipid identification; Lipid quantification; Lipidomics screen; Lipidxplorer; Mass spectrometry; MS MS; Shotgun lipidomics

Indexed keywords

ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; DATA BASE; DATA PROCESSING; LIPID ANALYSIS; LIPIDOMICS; MASS SPECTROMETRY; MOLECULAR FRAGMENTATION QUERY LANGUAGE; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; STRATEGIC PLANNING; WORKFLOW; CHEMISTRY; COMPUTER INTERFACE; LIPID METABOLISM; METABOLOME; PROCEDURES; SEARCH ENGINE; TANDEM MASS SPECTROMETRY;

EID: 84896387145     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi1412s43     Document Type: Article
Times cited : (52)

References (26)
  • 1
    • 33845261493 scopus 로고
    • A rapid method of total lipid extraction and purification
    • Bligh, E.G. and Dyer, W.J. 1959. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37:911-917.
    • (1959) Can. J. Biochem. Physiol. , vol.37 , pp. 911-917
    • Bligh, E.G.1    Dyer, W.J.2
  • 3
    • 60549109072 scopus 로고    scopus 로고
    • Lipidomics joins the omics evolution
    • Dennis, E.A. 2009. Lipidomics joins the omics evolution. Proc. Natl. Acad. Sci. U.S.A. 106:2089-2090.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 2089-2090
    • Dennis, E.A.1
  • 4
    • 48949104656 scopus 로고    scopus 로고
    • mzML: A single, unifying data format for mass spectrometer output
    • Deutsch, E. 2008. mzML: A single, unifying data format for mass spectrometer output. Proteomics 8:2776-2777.
    • (2008) Proteomics , vol.8 , pp. 2776-2777
    • Deutsch, E.1
  • 5
    • 33748514364 scopus 로고    scopus 로고
    • Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning
    • Ejsing, C.S., Duchoslav, E., Sampaio, J., Simons, K., Bonner, R., Thiele, C., Ekroos, K., and Shevchenko, A. 2006. Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal. Chem. 78:6202-6214.
    • (2006) Anal. Chem. , vol.78 , pp. 6202-6214
    • Ejsing, C.S.1    Duchoslav, E.2    Sampaio, J.3    Simons, K.4    Bonner, R.5    Thiele, C.6    Ekroos, K.7    Shevchenko, A.8
  • 8
    • 70449158340 scopus 로고
    • A simple method for the isolation and purification of total lipids from animal tissue
    • Folch, J.M., Lees, M., and Sloane-Stanley, G.H. 1957. A simple method for the isolation and purification of total lipids from animal tissue. J. Biol. Chem. 226:497-509.
    • (1957) J. Biol. Chem. , vol.226 , pp. 497-509
    • Folch, J.M.1    Lees, M.2    Sloane-Stanley, G.H.3
  • 10
    • 79953049294 scopus 로고    scopus 로고
    • Lipidomics at the interface of structure and function in systems biology
    • Gross, R.W. and Han, X. 2011. Lipidomics at the interface of structure and function in systems biology. Chem. Biol. 18:284-291.
    • (2011) Chem. Biol. , vol.18 , pp. 284-291
    • Gross, R.W.1    Han, X.2
  • 11
    • 18344393519 scopus 로고    scopus 로고
    • Shotgun lipidomics: Electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples
    • Han, X. and Gross, R.W. 2005. Shotgun lipidomics: Electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. Mass Spectrom. Rev. 24:367-412.
    • (2005) Mass Spectrom. Rev. , vol.24 , pp. 367-412
    • Han, X.1    Gross, R.W.2
  • 12
    • 84155172923 scopus 로고    scopus 로고
    • Multidimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses
    • Han, X., Yang, K., and Gross, R.W. 2012. Multidimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses. Mass Spectrom. Rev. 31:134-178.
    • (2012) Mass Spectrom. Rev. , vol.31 , pp. 134-178
    • Han, X.1    Yang, K.2    Gross, R.W.3
  • 13
    • 79959398473 scopus 로고    scopus 로고
    • Applications of mass spectrometry to lipids and membranes
    • Harkewicz, R. and Dennis, E.A. 2011. Applications of mass spectrometry to lipids and membranes. Annu. Rev. Biochem. 80:301-325.
    • (2011) Annu. Rev. Biochem. , vol.80 , pp. 301-325
    • Harkewicz, R.1    Dennis, E.A.2
  • 14
    • 78651516935 scopus 로고    scopus 로고
    • A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language
    • Herzog, R., Schwudke, D., Schuhmann, K., Sampaio, J.L., Bornstein, S.R., Schroeder, M., and Shevchenko, A. 2011. A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol. 12:R8.
    • (2011) Genome Biol , vol.12
    • Herzog, R.1    Schwudke, D.2    Schuhmann, K.3    Sampaio, J.L.4    Bornstein, S.R.5    Schroeder, M.6    Shevchenko, A.7
  • 19
    • 79960370644 scopus 로고    scopus 로고
    • Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers
    • Schuhmann, K., Herzog, R., Schwudke, D., Metelmann-Strupat, W., Bornstein, S.R., and Shevchenko, A. 2011. Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers. Anal. Chem. 83:5480-5487.
    • (2011) Anal. Chem. , vol.83 , pp. 5480-5487
    • Schuhmann, K.1    Herzog, R.2    Schwudke, D.3    Metelmann-Strupat, W.4    Bornstein, S.R.5    Shevchenko, A.6
  • 20
    • 84856328361 scopus 로고    scopus 로고
    • Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes
    • Schuhmann, K., Almeida, R., Baumert, M., Herzog, R., Bornstein, S.R., and Shevchenko, A. 2012. Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes. J. Mass Spectrom. 47:96-104.
    • (2012) J. Mass Spectrom. , vol.47 , pp. 96-104
    • Schuhmann, K.1    Almeida, R.2    Baumert, M.3    Herzog, R.4    Bornstein, S.R.5    Shevchenko, A.6
  • 23
    • 38449086882 scopus 로고    scopus 로고
    • Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control
    • Schwudke, D., Liebisch, G., Herzog, R., Schmitz, G., and Shevchenko, A. 2007b. Shotgun lipidomics by tandem mass spectrometry under data-dependent acquisition control. Methods Enzymol. 433:175-191.
    • (2007) Methods Enzymol , vol.433 , pp. 175-191
    • Schwudke, D.1    Liebisch, G.2    Herzog, R.3    Schmitz, G.4    Shevchenko, A.5
  • 24
    • 77954956306 scopus 로고    scopus 로고
    • Lipidomics: Coming to grips with lipid diversity
    • Shevchenko, A. and Simons, K. 2010. Lipidomics: Coming to grips with lipid diversity. Nat. Rev. Mol. Cell. Biol. 11:593-598.
    • (2010) Nat. Rev. Mol. Cell. Biol. , vol.11 , pp. 593-598
    • Shevchenko, A.1    Simons, K.2
  • 26
    • 78649980497 scopus 로고    scopus 로고
    • Lipidomics: New tools and applications
    • Wenk, M.R. 2010. Lipidomics: New tools and applications. Cell 143:888-895.
    • (2006) Cell , vol.143 , pp. 888-895
    • Wenk, M.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.