메뉴 건너뛰기




Volumn , Issue SUPPL.44, 2013, Pages

PepArML: A meta-search peptide identification platform for tandem mass spectra

Author keywords

Cloud computing; Machine learning; Proteomics; Tandem mass spectra

Indexed keywords

PEPTIDE; PROTEINASE;

EID: 84896381869     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi1323s44     Document Type: Article
Times cited : (19)

References (15)
  • 1
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. 2001. Random forests. Mach. Learn. 45:5-32.
    • (2001) Mach. Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 2
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM:Matching proteinswith tandem mass spectra
    • Craig, R. andBeavis, R.C. 2004. TANDEM:Matching proteinswith tandem mass spectra. Bioinformatics 20:1466-1467.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 3
    • 70349574233 scopus 로고    scopus 로고
    • An unsupervised, Model-Free, Machine-Learning combiner for peptide identifications from tandem mass spectra
    • Edwards, N., Wu, X., and Tseng, C.-W., 2009. An unsupervised, Model-Free, Machine-Learning combiner for peptide identifications from tandem mass spectra. Clin. Proteomics 5 (1).
    • (2009) Clin. Proteomics , vol.5 , Issue.1
    • Edwards, N.1    Wu, X.2    Tseng, C.-W.3
  • 4
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias, J.E. and Gygi, S.P. 2007. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4:207-214.
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 6
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., Nesvizhskii, A.I., Kolker, E., and Aebersold, R. 2002. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74:5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 7
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • Kessner, D., Chambers, M., Burke, R., Agus, D., and Mallick, P. 2008. ProteoWizard: Open source software for rapid proteomics tools development. Bioinformatics 24:2534-2536.
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 8
    • 50149117169 scopus 로고    scopus 로고
    • Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
    • Kim, S., Gupta, N., and Pevzner, P.A. 2008. Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases. J. Proteome Res. 7:3354-3363.
    • (2008) J. Proteome Res , vol.7 , pp. 3354-3363
    • Kim, S.1    Gupta, N.2    Pevzner, P.A.3
  • 9
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEMsearch engine
    • MacLean, B., Eng, J.K., Beavis, R.C., and McIntosh, M. 2006. General framework for developing and evaluating database scoring algorithms using the TANDEMsearch engine. Bioinformatics 22:2830-2832.
    • (2006) Bioinformatics , vol.22 , pp. 2830-2832
    • MacLean, B.1    Eng, J.K.2    Beavis, R.C.3    McIntosh, M.4
  • 11
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A.I., Keller, A., Kolker, E., and Aebersold, R. 2003. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 12
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for Large-Scale protein analysis: The yeast proteome
    • Peng, J., Elias, J.E., Thoreen, C.C., Licklider, L.J., amd Gygi, S.P. 2003. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for Large-Scale protein analysis: The yeast proteome. J. Proteome Res. 2:43-50.
    • (2003) J. Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 13
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N., Pappin, D.J., Creasy, D.M., and Cottrell, J.S. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 14
    • 33847401893 scopus 로고    scopus 로고
    • MyriMatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb, D.L., Fernando, C.G., and Chambers, M.C. 2007. MyriMatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. J. Proteome Res. 6:654-661.
    • (2007) J. Proteome Res , vol.6 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 15
    • 27544511899 scopus 로고    scopus 로고
    • InsPecT: Identification of post translationally modified peptides from tandem mass spectra
    • Tanner, S., Shu, H., Frank, A., Wang, L.C., Zandi, E., Mumby, M., Pevzner, P.A., and Bafna, V. 2005. InsPecT: Identification of post translationally modified peptides from tandem mass spectra. Anal. Chem. 77:4626-4639.
    • (2005) Anal. Chem. , vol.77 , pp. 4626-4639
    • Tanner, S.1    Shu, H.2    Frank, A.3    Wang, L.C.4    Zandi, E.5    Mumby, M.6    Pevzner, P.A.7    Bafna, V.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.