메뉴 건너뛰기




Volumn 111, Issue 10, 2014, Pages

Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

Author keywords

Pattern formation; Regulatory state boundaries; Repression circuitry

Indexed keywords

HEPATOCYTE NUCLEAR FACTOR 6; LEFT RIGHT DETERMINATION FACTOR; NODAL SIGNALING PROTEIN; TRANSCRIPTION FACTOR ONECUT; TRANSCRIPTION FACTOR SIX3; ZINC FINGER PROTEIN;

EID: 84896258154     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1323105111     Document Type: Article
Times cited : (53)

References (38)
  • 1
    • 0025255418 scopus 로고
    • How embryos work: A comparative view of diverse modes of cell fate specification
    • Davidson EH (1990) How embryos work: A comparative view of diverse modes of cell fate specification. Development 108(3):365-389.
    • (1990) Development , vol.108 , Issue.3 , pp. 365-389
    • Davidson, E.H.1
  • 3
    • 43149086112 scopus 로고    scopus 로고
    • Global regulatory logic for specification of an embryonic cell lineage
    • Oliveri P, Tu Q, Davidson EH (2008) Global regulatory logic for specification of an embryonic cell lineage. Proc Natl Acad Sci USA 105(16):5955-5962.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.16 , pp. 5955-5962
    • Oliveri, P.1    Tu, Q.2    Davidson, E.H.3
  • 4
    • 71149103484 scopus 로고    scopus 로고
    • Modularity and design principles in the sea urchin embryo gene regulatory network
    • Peter IS, Davidson EH (2009) Modularity and design principles in the sea urchin embryo gene regulatory network. FEBS Lett 583(24):3948-3958.
    • (2009) FEBS Lett , vol.583 , Issue.24 , pp. 3948-3958
    • Peter, I.S.1    Davidson, E.H.2
  • 5
    • 77951205560 scopus 로고    scopus 로고
    • The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage
    • Peter IS, Davidson EH (2010) The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage. Dev Biol 340(2):188-199.
    • (2010) Dev Biol , vol.340 , Issue.2 , pp. 188-199
    • Peter, I.S.1    Davidson, E.H.2
  • 6
    • 79959853681 scopus 로고    scopus 로고
    • A gene regulatory network controlling the embryonic specification of endoderm
    • Peter IS, Davidson EH (2011) A gene regulatory network controlling the embryonic specification of endoderm. Nature 474(7353):635-639.
    • (2011) Nature , vol.474 , Issue.7353 , pp. 635-639
    • Peter, I.S.1    Davidson, E.H.2
  • 7
    • 84867349994 scopus 로고    scopus 로고
    • Predictive computation of genomic logic processing functions in embryonic development
    • Peter IS, Faure E, Davidson EH (2012) Predictive computation of genomic logic processing functions in embryonic development. Proc Natl Acad Sci USA 109(41): 16434-16442.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.41 , pp. 16434-16442
    • Peter, I.S.1    Faure, E.2    Davidson, E.H.3
  • 8
    • 84873524360 scopus 로고    scopus 로고
    • Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos
    • Materna SC, Ransick A, Li E, Davidson EH (2013) Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos. Dev Biol 375(1): 92-104.
    • (2013) Dev Biol , vol.375 , Issue.1 , pp. 92-104
    • Materna, S.C.1    Ransick, A.2    Li, E.3    Davidson, E.H.4
  • 9
    • 84884414125 scopus 로고    scopus 로고
    • New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN
    • Li E, Materna SC, Davidson EH (2013) New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN. Dev Biol 382(1):268-279.
    • (2013) Dev Biol , vol.382 , Issue.1 , pp. 268-279
    • Li, E.1    Materna, S.C.2    Davidson, E.H.3
  • 10
    • 84865157367 scopus 로고    scopus 로고
    • Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo
    • Li E, Materna SC, Davidson EH (2012) Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo. Dev Biol 369(2):377-385.
    • (2012) Dev Biol , vol.369 , Issue.2 , pp. 377-385
    • Li, E.1    Materna, S.C.2    Davidson, E.H.3
  • 11
    • 67349171520 scopus 로고    scopus 로고
    • A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo
    • Su YH, et al. (2009) A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. Dev Biol 329(2):410-421.
    • (2009) Dev Biol , vol.329 , Issue.2 , pp. 410-421
    • Su, Y.H.1
  • 12
    • 84872417517 scopus 로고    scopus 로고
    • Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown
    • Ben-Tabou de-Leon S, Su YH, Lin KT, Li E, Davidson EH (2013) Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown. Dev Biol 374(1):245-254.
    • (2013) Dev Biol , vol.374 , Issue.1 , pp. 245-254
    • Ben-Tabou De-Leon, S.1    Su, Y.H.2    Lin, K.T.3    Li, E.4    Davidson, E.H.5
  • 13
    • 84858078505 scopus 로고    scopus 로고
    • Cis-regulatory logic driving glial cells missing: Selfsustaining circuitry in later embryogenesis
    • Ransick A, Davidson EH (2012) Cis-regulatory logic driving glial cells missing: Selfsustaining circuitry in later embryogenesis. Dev Biol 364(2):259-267.
    • (2012) Dev Biol , vol.364 , Issue.2 , pp. 259-267
    • Ransick, A.1    Davidson, E.H.2
  • 14
    • 37749029445 scopus 로고    scopus 로고
    • A Wnt-FoxQ2-nodal pathway links primary and secondary axis specification in sea urchin embryos
    • Yaguchi S, Yaguchi J, Angerer RC, Angerer LM (2008) A Wnt-FoxQ2-nodal pathway links primary and secondary axis specification in sea urchin embryos. Dev Cell 14(1): 97-107.
    • (2008) Dev Cell , vol.14 , Issue.1 , pp. 97-107
    • Yaguchi, S.1    Yaguchi, J.2    Angerer, R.C.3    Angerer, L.M.4
  • 15
    • 67449168538 scopus 로고    scopus 로고
    • The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center
    • Wei Z, Yaguchi J, Yaguchi S, Angerer RC, Angerer LM (2009) The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center. Development 136(7): 1179-1189.
    • (2009) Development , vol.136 , Issue.7 , pp. 1179-1189
    • Wei, Z.1    Yaguchi, J.2    Yaguchi, S.3    Angerer, R.C.4    Angerer, L.M.5
  • 16
    • 77956628617 scopus 로고    scopus 로고
    • High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development
    • Materna SC, Nam J, Davidson EH (2010) High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development. Gene Expr Patterns 10(4-5):177-184.
    • (2010) Gene Expr Patterns , vol.10 , Issue.4-5 , pp. 177-184
    • Materna, S.C.1    Nam, J.2    Davidson, E.H.3
  • 17
    • 84873856662 scopus 로고    scopus 로고
    • Integration of canonical and noncanonical Wnt signaling pathways patterns the neuroectoderm along the anterior-posterior axis of sea urchin embryos
    • Range RC, Angerer RC, Angerer LM (2013) Integration of canonical and noncanonical Wnt signaling pathways patterns the neuroectoderm along the anterior-posterior axis of sea urchin embryos. PLoS Biol 11(1):e1001467.
    • (2013) PLoS Biol , vol.11 , Issue.1
    • Range, R.C.1    Angerer, R.C.2    Angerer, L.M.3
  • 18
    • 33751520928 scopus 로고    scopus 로고
    • The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development
    • Materna SC, Howard-Ashby M, Gray RF, Davidson EH (2006) The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development. Dev Biol 300(1):108-120.
    • (2006) Dev Biol , vol.300 , Issue.1 , pp. 108-120
    • Materna, S.C.1    Howard-Ashby, M.2    Gray, R.F.3    Davidson, E.H.4
  • 19
    • 33947396707 scopus 로고    scopus 로고
    • Development: Built to run, not fail
    • Oliveri P, Davidson EH (2007) Development: Built to run, not fail. Science 315(5818): 1510-1511.
    • (2007) Science , vol.315 , Issue.5818 , pp. 1510-1511
    • Oliveri, P.1    Davidson, E.H.2
  • 20
    • 78650362376 scopus 로고    scopus 로고
    • Emerging properties of animal gene regulatory networks
    • Davidson EH (2010) Emerging properties of animal gene regulatory networks. Nature 468(7326):911-920.
    • (2010) Nature , vol.468 , Issue.7326 , pp. 911-920
    • Davidson, E.H.1
  • 21
    • 0042386678 scopus 로고    scopus 로고
    • Tight regulation of SpSoxB factors is required for patterning and morphogenesis in sea urchin embryos
    • Kenny AP, Oleksyn DW, Newman LA, Angerer RC, Angerer LM (2003) Tight regulation of SpSoxB factors is required for patterning and morphogenesis in sea urchin embryos. Dev Biol 261(2):412-425.
    • (2003) Dev Biol , vol.261 , Issue.2 , pp. 412-425
    • Kenny, A.P.1    Oleksyn, D.W.2    Newman, L.A.3    Angerer, R.C.4    Angerer, L.M.5
  • 22
    • 0036607585 scopus 로고    scopus 로고
    • New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization
    • Ransick A, Rast JP, Minokawa T, Calestani C, Davidson EH (2002) New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization. Dev Biol 246(1):132-147.
    • (2002) Dev Biol , vol.246 , Issue.1 , pp. 132-147
    • Ransick, A.1    Rast, J.P.2    Minokawa, T.3    Calestani, C.4    Davidson, E.H.5
  • 23
    • 34548858215 scopus 로고    scopus 로고
    • A global view of gene expression in lithium and zinc treated sea urchin embryos: New components of gene regulatory networks
    • Poustka AJ, et al. (2007) A global view of gene expression in lithium and zinc treated sea urchin embryos: New components of gene regulatory networks. Genome Biol 8(5):R85.
    • (2007) Genome Biol , vol.8 , Issue.5
    • Poustka, A.J.1
  • 24
    • 34249876002 scopus 로고    scopus 로고
    • Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network
    • Nam J, et al. (2007) Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network. Dev Biol 306(2):860-869.
    • (2007) Dev Biol , vol.306 , Issue.2 , pp. 860-869
    • Nam, J.1
  • 25
    • 79951677809 scopus 로고    scopus 로고
    • Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo
    • Coluccio AE, LaCasse TJ, Coffman JA (2011) Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo. Mol Reprod Dev 78(2):68.
    • (2011) Mol Reprod Dev , vol.78 , Issue.2 , pp. 68
    • Coluccio, A.E.1    Lacasse, T.J.2    Coffman, J.A.3
  • 26
    • 67349143114 scopus 로고    scopus 로고
    • Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2
    • Coffman JA, Coluccio A, Planchart A, Robertson AJ (2009) Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2. Dev Biol 330(1):123-130.
    • (2009) Dev Biol , vol.330 , Issue.1 , pp. 123-130
    • Coffman, J.A.1    Coluccio, A.2    Planchart, A.3    Robertson, A.J.4
  • 27
    • 4043091372 scopus 로고    scopus 로고
    • Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus
    • Coffman JA, McCarthy JJ, Dickey-Sims C, Robertson AJ (2004) Oral-aboral axis specification in the sea urchin embryo II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus. Dev Biol 273(1): 160-171.
    • (2004) Dev Biol , vol.273 , Issue.1 , pp. 160-171
    • Coffman, J.A.1    McCarthy, J.J.2    Dickey-Sims, C.3    Robertson, A.J.4
  • 28
    • 0035253391 scopus 로고    scopus 로고
    • Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry
    • Coffman JA, Davidson EH (2001) Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry. Dev Biol 230(1):18-28.
    • (2001) Dev Biol , vol.230 , Issue.1 , pp. 18-28
    • Coffman, J.A.1    Davidson, E.H.2
  • 29
    • 73649110278 scopus 로고    scopus 로고
    • Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo
    • Duboc V, et al. (2010) Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo. Development 137(2):223-235.
    • (2010) Development , vol.137 , Issue.2 , pp. 223-235
    • Duboc, V.1
  • 30
    • 12144288504 scopus 로고    scopus 로고
    • Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo
    • Duboc V, Röttinger E, Besnardeau L, Lepage T (2004) Nodal and BMP2/4 signaling organizes the oral-aboral axis of the sea urchin embryo. Dev Cell 6(3):397-410.
    • (2004) Dev Cell , vol.6 , Issue.3 , pp. 397-410
    • Duboc, V.1    Röttinger, E.2    Besnardeau, L.3    Lepage, T.4
  • 31
    • 0030831284 scopus 로고    scopus 로고
    • The allocation of early blastomeres to the ectoderm and endoderm is variable in the sea urchin embryo
    • Logan CY, McClay DR (1997) The allocation of early blastomeres to the ectoderm and endoderm is variable in the sea urchin embryo. Development 124(11):2213-2223.
    • (1997) Development , vol.124 , Issue.11 , pp. 2213-2223
    • Logan, C.Y.1    McClay, D.R.2
  • 32
    • 0032008552 scopus 로고    scopus 로고
    • Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo
    • Ransick A, Davidson EH (1998) Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo. Dev Biol 195(1):38-48.
    • (1998) Dev Biol , vol.195 , Issue.1 , pp. 38-48
    • Ransick, A.1    Davidson, E.H.2
  • 33
    • 84888872777 scopus 로고    scopus 로고
    • Short-range Wnt5 signaling initiates specification of sea urchin posterior ectoderm
    • McIntyre DC, Seay NW, Croce JC, McClay DR (2013) Short-range Wnt5 signaling initiates specification of sea urchin posterior ectoderm. Development 140(24):4881-4889.
    • (2013) Development , vol.140 , Issue.24 , pp. 4881-4889
    • McIntyre, D.C.1    Seay, N.W.2    Croce, J.C.3    McClay, D.R.4
  • 34
    • 78650699481 scopus 로고    scopus 로고
    • Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm
    • Saudemont A, et al. (2010) Ancestral regulatory circuits governing ectoderm patterning downstream of Nodal and BMP2/4 revealed by gene regulatory network analysis in an echinoderm. PLoS Genet 6(12):e1001259.
    • (2010) PLoS Genet , vol.6 , Issue.12
    • Saudemont, A.1
  • 35
    • 36148930606 scopus 로고    scopus 로고
    • Cis-regulatory analysis of nodal and maternal control of dorsalventral axis formation by Univin, a TGF-beta related to Vg1
    • Range R, et al. (2007) Cis-regulatory analysis of nodal and maternal control of dorsalventral axis formation by Univin, a TGF-beta related to Vg1. Development 134(20): 3649-3664.
    • (2007) Development , vol.134 , Issue.20 , pp. 3649-3664
    • Range, R.1
  • 36
    • 33748331175 scopus 로고    scopus 로고
    • Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo
    • Arenas-Mena C, Cameron RA, Davidson EH (2006) Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo. Dev Growth Differ 48(7):463-472.
    • (2006) Dev Growth Differ , vol.48 , Issue.7 , pp. 463-472
    • Arenas-Mena, C.1    Cameron, R.A.2    Davidson, E.H.3
  • 37
    • 84867146009 scopus 로고    scopus 로고
    • Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
    • Tu Q, Cameron RA, Worley KC, Gibbs RA, Davidson EH (2012) Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Genome Res 22(10):2079-2087.
    • (2012) Genome Res , vol.22 , Issue.10 , pp. 2079-2087
    • Tu, Q.1    Cameron, R.A.2    Worley, K.C.3    Gibbs, R.A.4    Davidson, E.H.5
  • 38
    • 0027437450 scopus 로고
    • Whole mount in situ hybridization shows Endo 16 to be a marker for the vegetal plate territory in sea urchin embryos
    • Ransick A, Ernst S, Britten RJ, Davidson EH (1993) Whole mount in situ hybridization shows Endo 16 to be a marker for the vegetal plate territory in sea urchin embryos. Mech Dev 42(3):117-124.
    • (1993) Mech Dev , vol.42 , Issue.3 , pp. 117-124
    • Ransick, A.1    Ernst, S.2    Britten, R.J.3    Davidson, E.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.