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Volumn 47, Issue 4-5, 2014, Pages 267-273

A review of room temperature storage of biospecimen tissue and nucleic acids for anatomic pathology laboratories and biorepositories

Author keywords

Biobank; Biorepository; Biospecimen; Room temperature; Tissue

Indexed keywords

NUCLEIC ACID;

EID: 84896055321     PISSN: 00099120     EISSN: 18732933     Source Type: Journal    
DOI: 10.1016/j.clinbiochem.2013.12.011     Document Type: Article
Times cited : (65)

References (66)
  • 1
    • 0029855974 scopus 로고    scopus 로고
    • Continuing role of a frozen-tissue bank in molecular pathology
    • Naber S.P. Continuing role of a frozen-tissue bank in molecular pathology. Diagn Mol Pathol 1996, 5:253-259.
    • (1996) Diagn Mol Pathol , vol.5 , pp. 253-259
    • Naber, S.P.1
  • 2
    • 0026822402 scopus 로고
    • Role of the frozen tissue bank in molecular pathology
    • Naber S.P., Smith L.L., Wolfe H.J. Role of the frozen tissue bank in molecular pathology. Diagn Mol Pathol 1992, 1:73-79.
    • (1992) Diagn Mol Pathol , vol.1 , pp. 73-79
    • Naber, S.P.1    Smith, L.L.2    Wolfe, H.J.3
  • 3
  • 5
    • 84896054760 scopus 로고    scopus 로고
    • Brain-bank glitch mars research into autism
    • Levitz J. Brain-bank glitch mars research into autism. Wall Str J June 2012, 11.
    • (2012) Wall Str J , pp. 11
    • Levitz, J.1
  • 6
    • 0036898005 scopus 로고    scopus 로고
    • Effect of fixatives and tissue processing on the content and integrity of nucleic acids
    • Srinivasan M., Sedmak D., Jewell S. Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 2002, 161:1961-1971.
    • (2002) Am J Pathol , vol.161 , pp. 1961-1971
    • Srinivasan, M.1    Sedmak, D.2    Jewell, S.3
  • 7
    • 17144371484 scopus 로고    scopus 로고
    • Determination of optimal rehydration, fixation and staining methods for histological and immunohistochemical analysis of mummified soft tissues
    • Mekota A.M., Vermehren M. Determination of optimal rehydration, fixation and staining methods for histological and immunohistochemical analysis of mummified soft tissues. Biotech Histochem 2005, 80:7-13.
    • (2005) Biotech Histochem , vol.80 , pp. 7-13
    • Mekota, A.M.1    Vermehren, M.2
  • 8
    • 77149166035 scopus 로고    scopus 로고
    • Ancestry and pathology in King Tutankhamun's family
    • Hawass Z. Ancestry and pathology in King Tutankhamun's family. JAMA 2010, 303:638-647.
    • (2010) JAMA , vol.303 , pp. 638-647
    • Hawass, Z.1
  • 9
    • 0025003134 scopus 로고
    • Fundamental study on the mechanism of DNA degradation in tissues fixed in formaldehyde
    • Tokuda Y., Satonaka K., Maeda S., Doi K., Baba S., Sugiyama T. Fundamental study on the mechanism of DNA degradation in tissues fixed in formaldehyde. J Clin Pathol 1990, 43:748-751.
    • (1990) J Clin Pathol , vol.43 , pp. 748-751
    • Tokuda, Y.1    Satonaka, K.2    Maeda, S.3    Doi, K.4    Baba, S.5    Sugiyama, T.6
  • 12
    • 0036155496 scopus 로고    scopus 로고
    • Use of FTA gene guard filter paper for the storage and transportation of tumor cells for molecular testing
    • Dobbs L.J., Madigan M.N., Carter A.B., Earls L. Use of FTA gene guard filter paper for the storage and transportation of tumor cells for molecular testing. Arch Pathol Lab Med 2002, 126:56-63.
    • (2002) Arch Pathol Lab Med , vol.126 , pp. 56-63
    • Dobbs, L.J.1    Madigan, M.N.2    Carter, A.B.3    Earls, L.4
  • 13
    • 77049100337 scopus 로고    scopus 로고
    • Assessment of DNA extracted from FTA cards for use on the Illumina iSelect BeadChip
    • McClure M., McKay S., Schnabel R., Taylor J. Assessment of DNA extracted from FTA cards for use on the Illumina iSelect BeadChip. BMC Res Notes 2009, 2:1-4.
    • (2009) BMC Res Notes , vol.2 , pp. 1-4
    • McClure, M.1    McKay, S.2    Schnabel, R.3    Taylor, J.4
  • 14
    • 33750289481 scopus 로고    scopus 로고
    • Long-term storage and safe retrieval of DNA from microorganisms for molecular analysis using FTA matrix cards
    • Rajendram D., Ayenza R., Holder F.M., Moran B., Long T., Shah H.N. Long-term storage and safe retrieval of DNA from microorganisms for molecular analysis using FTA matrix cards. J Microbiol Methods 2006, 67:582-592.
    • (2006) J Microbiol Methods , vol.67 , pp. 582-592
    • Rajendram, D.1    Ayenza, R.2    Holder, F.M.3    Moran, B.4    Long, T.5    Shah, H.N.6
  • 15
    • 84896028732 scopus 로고    scopus 로고
    • Whatman, FTA reference publication
    • Available at:, [Accessed October 17, 2013]
    • Whatman, FTA reference publication Available at:, [Accessed October 17, 2013]. http://www.whatman.com/References/FTA%20Journal%20Articles%20May%202008.pdf.
  • 16
    • 84896047941 scopus 로고    scopus 로고
    • Available at:, [Accessed October 17, 2013]
    • Whatman, your forensic samples, our experience Available at:, [Accessed October 17, 2013]. https://www.gelifesciences.com/gehcls_images/GELS/Related%20Content/Files/1326706518989/litdoc29005583_20120725211651.pdf.
    • Whatman, your forensic samples, our experience
  • 18
    • 77954021356 scopus 로고    scopus 로고
    • Assessing a novel room-temperature RNA storage medium for compatibility in microarray gene expression analysis
    • [670]
    • Hernandez G.E., Mondala T.S., Head S.R. Assessing a novel room-temperature RNA storage medium for compatibility in microarray gene expression analysis. Biotechniques 2009, 47:667-668. [670].
    • (2009) Biotechniques , vol.47 , pp. 667-668
    • Hernandez, G.E.1    Mondala, T.S.2    Head, S.R.3
  • 22
    • 84896043188 scopus 로고    scopus 로고
    • [Accessed October 17, 2013]
    • [Accessed October 17, 2013]. http://www.biomatrica.com/solutions_forensics.php.
  • 25
  • 27
    • 84896054851 scopus 로고    scopus 로고
    • Medical Device and Diagnostic Industry
    • Available at:, [Accessed October17, 2013]
    • Medical Device and Diagnostic Industry General Aging Theory and Simplified Protocol for Accelerated Aging of Medical Devices Available at:, [Accessed October17, 2013]. http://www.mddionline.com/article/general-aging-theory-and-simplified-protocol-accelerated-aging-medical-devices.
    • General Aging Theory and Simplified Protocol for Accelerated Aging of Medical Devices
  • 29
    • 84879839825 scopus 로고    scopus 로고
    • Optimal preservation of liver biopsy samples for downstream translational applications
    • Sherker A., Cherepanov V., Alvandi Z., Ramos R., Feld J. Optimal preservation of liver biopsy samples for downstream translational applications. Hepatol Int 2013, 7:758-766.
    • (2013) Hepatol Int , vol.7 , pp. 758-766
    • Sherker, A.1    Cherepanov, V.2    Alvandi, Z.3    Ramos, R.4    Feld, J.5
  • 30
    • 84855182930 scopus 로고    scopus 로고
    • Maintaining breast cancer specimen integrity and individual or simultaneous extraction of quality DNA, RNA, and proteins from Allprotect-stabilized and nonstabilized tissue samples
    • Mee B.C., Carroll P., Donatello S., Connolly E., Griffin M., Dunne B., et al. Maintaining breast cancer specimen integrity and individual or simultaneous extraction of quality DNA, RNA, and proteins from Allprotect-stabilized and nonstabilized tissue samples. Biopreserv Biobanking 2011, 9:389-398.
    • (2011) Biopreserv Biobanking , vol.9 , pp. 389-398
    • Mee, B.C.1    Carroll, P.2    Donatello, S.3    Connolly, E.4    Griffin, M.5    Dunne, B.6
  • 31
    • 42249090184 scopus 로고    scopus 로고
    • Lyophilization, a practical way to store and transport tissues prior to protein extraction for 2DE analysis?
    • Carpentier S.C., Dens K., Van den houwe I., Swennen R., Panis B. Lyophilization, a practical way to store and transport tissues prior to protein extraction for 2DE analysis?. Proteomics 2007, 7:64-69.
    • (2007) Proteomics , vol.7 , pp. 64-69
    • Carpentier, S.C.1    Dens, K.2    Van den houwe, I.3    Swennen, R.4    Panis, B.5
  • 34
    • 84879410916 scopus 로고    scopus 로고
    • Lyophilized brain tumor specimens can be used for histologic, nucleic acid, and protein analyses after 1year of room temperature storage
    • Mareninov S., De Jesus S.J., Sanchez D.E., Kay A.B., Wilson R.W., Babic I., et al. Lyophilized brain tumor specimens can be used for histologic, nucleic acid, and protein analyses after 1year of room temperature storage. J Neurooncol 2013, 113:365-373.
    • (2013) J Neurooncol , vol.113 , pp. 365-373
    • Mareninov, S.1    De Jesus, S.J.2    Sanchez, D.E.3    Kay, A.B.4    Wilson, R.W.5    Babic, I.6
  • 35
    • 0033060887 scopus 로고    scopus 로고
    • Preservation of pathological tissue specimens by freeze-drying for immunohistochemical staining and various molecular biological analyses
    • Matsuo S., Sugiyama T., Okuyama T., Yoshikawa K., Honda K., Takahashi R., et al. Preservation of pathological tissue specimens by freeze-drying for immunohistochemical staining and various molecular biological analyses. Pathol Int 1999, 49:383-390.
    • (1999) Pathol Int , vol.49 , pp. 383-390
    • Matsuo, S.1    Sugiyama, T.2    Okuyama, T.3    Yoshikawa, K.4    Honda, K.5    Takahashi, R.6
  • 36
    • 56549110054 scopus 로고    scopus 로고
    • Long-term preservation at room temperature of freeze-dried human tumor samples dedicated to nucleic acids analyses
    • Leboeuf C., Ratajczak P., Zhao W.L., Plassa L.F., Court M., Pisonero H., et al. Long-term preservation at room temperature of freeze-dried human tumor samples dedicated to nucleic acids analyses. Cell Preserv Technol 2008, 6:191-198.
    • (2008) Cell Preserv Technol , vol.6 , pp. 191-198
    • Leboeuf, C.1    Ratajczak, P.2    Zhao, W.L.3    Plassa, L.F.4    Court, M.5    Pisonero, H.6
  • 38
    • 55149100048 scopus 로고    scopus 로고
    • Histology without formalin?
    • Buesa R.J. Histology without formalin?. Ann Diagn Pathol 2008, 12:387-396.
    • (2008) Ann Diagn Pathol , vol.12 , pp. 387-396
    • Buesa, R.J.1
  • 39
    • 80054932503 scopus 로고    scopus 로고
    • Formaldehyde substitute fixatives: effects on nucleic acid preservation
    • Moelans C.B., Oostenrijk D., Moons M.J., Van Dies P.J. Formaldehyde substitute fixatives: effects on nucleic acid preservation. J Clin Pathol 2011, 64:960-967.
    • (2011) J Clin Pathol , vol.64 , pp. 960-967
    • Moelans, C.B.1    Oostenrijk, D.2    Moons, M.J.3    Van Dies, P.J.4
  • 41
    • 84874648125 scopus 로고    scopus 로고
    • Will PAXgene substitute formalin? A morphological and molecular comparative study using a new fixative system
    • Belloni B., Lambertini C., Nuciforo P., Phillips J., Bruening E., Wong S., et al. Will PAXgene substitute formalin? A morphological and molecular comparative study using a new fixative system. J Clin Pathol 2013, 66:124-135.
    • (2013) J Clin Pathol , vol.66 , pp. 124-135
    • Belloni, B.1    Lambertini, C.2    Nuciforo, P.3    Phillips, J.4    Bruening, E.5    Wong, S.6
  • 43
    • 82955216249 scopus 로고    scopus 로고
    • Paraffin embedding contributes to RNA aggregation, reduced RNA Yield, and low RNA quality
    • Evers D.L., He J., Kim Y.H., Mason J.T., O'Leary T.J. Paraffin embedding contributes to RNA aggregation, reduced RNA Yield, and low RNA quality. J Mol Diagn 2011, 13:687-694.
    • (2011) J Mol Diagn , vol.13 , pp. 687-694
    • Evers, D.L.1    He, J.2    Kim, Y.H.3    Mason, J.T.4    O'Leary, T.J.5
  • 45
    • 77951631386 scopus 로고    scopus 로고
    • The isolation of nucleic acids from fixed, paraffin-embedded tissues-Which methods are useful when?
    • Gilbert M.T., Haselkorn T., Bunce M., Sanchez J.J., Lucas S.B., Jewell L.D., et al. The isolation of nucleic acids from fixed, paraffin-embedded tissues-Which methods are useful when?. PLoS One 2007, 2:e537.
    • (2007) PLoS One , vol.2
    • Gilbert, M.T.1    Haselkorn, T.2    Bunce, M.3    Sanchez, J.J.4    Lucas, S.B.5    Jewell, L.D.6
  • 46
    • 84868210006 scopus 로고    scopus 로고
    • Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome
    • Barrans S.L., Crouch S., Care M.A., Worrillow L., Smith A., Patmore R., et al. Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome. Br J Haematol 2012, 159:441-453.
    • (2012) Br J Haematol , vol.159 , pp. 441-453
    • Barrans, S.L.1    Crouch, S.2    Care, M.A.3    Worrillow, L.4    Smith, A.5    Patmore, R.6
  • 47
    • 84859704449 scopus 로고    scopus 로고
    • Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens
    • Kotorashvili A., Ramnauth A., Liu C., Lin J., Ye K., Kim R., et al. Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens. PLoS One 2012, 7:e34683.
    • (2012) PLoS One , vol.7
    • Kotorashvili, A.1    Ramnauth, A.2    Liu, C.3    Lin, J.4    Ye, K.5    Kim, R.6
  • 48
    • 0036735310 scopus 로고    scopus 로고
    • Methacarn fixation for genomic DNA analysis in microdissected, paraffin-embedded tissue specimens
    • Uneyama C., Shibutani M., Masutomi N., Takagi H., Hirose M. Methacarn fixation for genomic DNA analysis in microdissected, paraffin-embedded tissue specimens. J Histochem Cytochem 2002, 50:1237-1245.
    • (2002) J Histochem Cytochem , vol.50 , pp. 1237-1245
    • Uneyama, C.1    Shibutani, M.2    Masutomi, N.3    Takagi, H.4    Hirose, M.5
  • 49
    • 84864917026 scopus 로고    scopus 로고
    • Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens
    • Yost S.E., Smith E.N., Schwab R.B., Bao L., Jung H., Wang X., et al. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res 2012, 40:e107.
    • (2012) Nucleic Acids Res , vol.40
    • Yost, S.E.1    Smith, E.N.2    Schwab, R.B.3    Bao, L.4    Jung, H.5    Wang, X.6
  • 51
    • 0034049097 scopus 로고    scopus 로고
    • Methacarn fixation: a novel tool for analysis of gene expressions in paraffin-embedded tissue specimens
    • Shibutani M., Uneyama C., Miyazaki K., Toyoda K., Hirose M. Methacarn fixation: a novel tool for analysis of gene expressions in paraffin-embedded tissue specimens. Lab Invest 2000, 80:199-208.
    • (2000) Lab Invest , vol.80 , pp. 199-208
    • Shibutani, M.1    Uneyama, C.2    Miyazaki, K.3    Toyoda, K.4    Hirose, M.5
  • 52
    • 33644518208 scopus 로고    scopus 로고
    • Assessment of fixatives, fixation, and tissue processing on morphology and RNA integrity
    • Cox M.L., Schray C.L., Luster C.N., Stewart Z.S., Korytko P.J., Khan K.N.M., et al. Assessment of fixatives, fixation, and tissue processing on morphology and RNA integrity. Exp Mol Pathol 2006, 80:183-191.
    • (2006) Exp Mol Pathol , vol.80 , pp. 183-191
    • Cox, M.L.1    Schray, C.L.2    Luster, C.N.3    Stewart, Z.S.4    Korytko, P.J.5    Khan, K.N.M.6
  • 53
    • 0142106515 scopus 로고    scopus 로고
    • A tissue fixative that protects macromolecules (DNA, RNA, and protein) and histomorphology in clinical samples
    • Vincek V., Nassiri M., Nadji M., Morales A.R. A tissue fixative that protects macromolecules (DNA, RNA, and protein) and histomorphology in clinical samples. Lab Invest 2003, 83:1427-1435.
    • (2003) Lab Invest , vol.83 , pp. 1427-1435
    • Vincek, V.1    Nassiri, M.2    Nadji, M.3    Morales, A.R.4
  • 54
    • 33746404835 scopus 로고    scopus 로고
    • A novel fixative improves opportunities of nucleic acids and proteomic analysis in human archive's tissues
    • Stanta G., Mucelli S.P., Petrera F., Bonin S., Bussolati G. A novel fixative improves opportunities of nucleic acids and proteomic analysis in human archive's tissues. Diagn Mol Pathol 2006, 15:115-123.
    • (2006) Diagn Mol Pathol , vol.15 , pp. 115-123
    • Stanta, G.1    Mucelli, S.P.2    Petrera, F.3    Bonin, S.4    Bussolati, G.5
  • 55
    • 0035674832 scopus 로고    scopus 로고
    • HOPE fixation: a novel fixing method and paraffin-embedding technique for human soft tissues
    • Olert J., Wiedorn K.H., Goldmann T., Kühl H., Mehraein Y., Scherthan H., et al. HOPE fixation: a novel fixing method and paraffin-embedding technique for human soft tissues. Pathol Res Pract 2001, 197:823-826.
    • (2001) Pathol Res Pract , vol.197 , pp. 823-826
    • Olert, J.1    Wiedorn, K.H.2    Goldmann, T.3    Kühl, H.4    Mehraein, Y.5    Scherthan, H.6
  • 56
    • 10644219520 scopus 로고    scopus 로고
    • The HOPE-technique permits Northern blot and microarray analyses in paraffin-embedded tissues
    • Goldmann T., Flohr A.M., Murua Escobar H., Gerstmayer B., Janssen U., Bosio A., et al. The HOPE-technique permits Northern blot and microarray analyses in paraffin-embedded tissues. Pathol Res Pract 2004, 200:511-515.
    • (2004) Pathol Res Pract , vol.200 , pp. 511-515
    • Goldmann, T.1    Flohr, A.M.2    Murua Escobar, H.3    Gerstmayer, B.4    Janssen, U.5    Bosio, A.6
  • 57
    • 77649254440 scopus 로고    scopus 로고
    • The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells
    • Paavilainen L., Edvinsson A., Asplund A., Hober S., Kampf C., Pontén F., et al. The impact of tissue fixatives on morphology and antibody-based protein profiling in tissues and cells. J Histochem Cytochem 2010, 58:237-246.
    • (2010) J Histochem Cytochem , vol.58 , pp. 237-246
    • Paavilainen, L.1    Edvinsson, A.2    Asplund, A.3    Hober, S.4    Kampf, C.5    Pontén, F.6
  • 58
    • 84867401968 scopus 로고    scopus 로고
    • Systematic comparison of tissue fixation with alternative fixatives to conventional tissue fixation with buffered formalin in a xenograft-based model
    • Nietner T., Jarutat T., Mertens A. Systematic comparison of tissue fixation with alternative fixatives to conventional tissue fixation with buffered formalin in a xenograft-based model. Virchows Arch 2012, 461:259-269.
    • (2012) Virchows Arch , vol.461 , pp. 259-269
    • Nietner, T.1    Jarutat, T.2    Mertens, A.3
  • 59
    • 71549173120 scopus 로고    scopus 로고
    • Liquid chromatography-tandem and MALDI imaging mass spectrometry analyses of RCL2/CS100-fixed, paraffin-embedded tissues: proteomics evaluation of an alternate fixative for biomarker discovery
    • Mangé A., Chaurand P., Perrochia H., Roger P., Caprioli R.M., Solassol J. Liquid chromatography-tandem and MALDI imaging mass spectrometry analyses of RCL2/CS100-fixed, paraffin-embedded tissues: proteomics evaluation of an alternate fixative for biomarker discovery. J Proteome Res 2009, 8:5619-5628.
    • (2009) J Proteome Res , vol.8 , pp. 5619-5628
    • Mangé, A.1    Chaurand, P.2    Perrochia, H.3    Roger, P.4    Caprioli, R.M.5    Solassol, J.6
  • 60
    • 79958278458 scopus 로고    scopus 로고
    • An alternative fixative to formalin fixation for molecular applications: the RCL2(®)-CS100 approach
    • Denouël A., Boissière-Michot F., Rochaix P., Bibeau F., Boulle N. An alternative fixative to formalin fixation for molecular applications: the RCL2(®)-CS100 approach. Methods Mol Biol 2011, 724:297-307.
    • (2011) Methods Mol Biol , vol.724 , pp. 297-307
    • Denouël, A.1    Boissière-Michot, F.2    Rochaix, P.3    Bibeau, F.4    Boulle, N.5
  • 61
  • 63
    • 84896055646 scopus 로고    scopus 로고
    • Available at:, [Accessed October17, 2013]
    • US EPA Calculations and References, Clean Energy Available at:, [Accessed October17, 2013]. http://www.epa.gov/cleanenergy/energy-resources/refs.html.
    • US EPA Calculations and References, Clean Energy
  • 64
    • 16344373598 scopus 로고    scopus 로고
    • Histomorphologic assessment of formalin substitute fixatives for diagnostic surgical pathology
    • Titford M.E., Horenstein M.G. Histomorphologic assessment of formalin substitute fixatives for diagnostic surgical pathology. Arch Pathol Lab Med 2005, 129:502-506.
    • (2005) Arch Pathol Lab Med , vol.129 , pp. 502-506
    • Titford, M.E.1    Horenstein, M.G.2
  • 65
    • 33748110238 scopus 로고    scopus 로고
    • Molecular-friendly histopathology: validation of a robust platform
    • Nadji M. Molecular-friendly histopathology: validation of a robust platform. J Histotechnol 2005, 28:231-234.
    • (2005) J Histotechnol , vol.28 , pp. 231-234
    • Nadji, M.1
  • 66
    • 80053402730 scopus 로고    scopus 로고
    • Biobankonomics: developing a sustainable business model approach for the formation of a human tissue biobank
    • Vaught J., Rogers J., Carolin T., Compton C. Biobankonomics: developing a sustainable business model approach for the formation of a human tissue biobank. JNCI Monogr 2011, 42:24-31.
    • (2011) JNCI Monogr , vol.42 , pp. 24-31
    • Vaught, J.1    Rogers, J.2    Carolin, T.3    Compton, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.