메뉴 건너뛰기




Volumn 9, Issue 2, 2014, Pages

pY RNA1-s2: A highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3)

Author keywords

[No Author keywords available]

Indexed keywords

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U LIKE PROTEIN; MATRIN 3; NUCLEAR MATRIX PROTEIN; PY RNA1-S1; PY RNA1-S2; RIBONUCLEOPROTEIN; RNA; UNCLASSIFIED DRUG; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; MATR3 PROTEIN, HUMAN; MATRIN 3, RAT; MATRIN-3 PROTEIN, MOUSE; NUCLEAR PROTEIN; PROTEIN BINDING; RNA BINDING PROTEIN; SMALL UNTRANSLATED RNA;

EID: 84895896405     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0088217     Document Type: Article
Times cited : (17)

References (49)
  • 1
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H, Ingolia NT, Weissman JS, Bartel DP (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
    • (2010) Nature , vol.466 , pp. 835-840
    • Guo, H.1    Ingolia, N.T.2    Weissman, J.S.3    Bartel, D.P.4
  • 3
    • 0025098692 scopus 로고
    • Detailed structure of the Drosophila melanogaster stellate genes and their transcripts
    • Livak KJ (1990) Detailed structure of the Drosophila melanogaster stellate genes and their transcripts. Genetics 124: 303-316.
    • (1990) Genetics , vol.124 , pp. 303-316
    • Livak, K.J.1
  • 4
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: Matchmaking for Argonautes
    • Czech B, Hannon GJ (2011) Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 12: 19-31.
    • (2011) Nat Rev Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 5
    • 78649679968 scopus 로고    scopus 로고
    • piRNAs, transposon silencing, and Drosophila germline development
    • Khurana JS, Theurkauf W (2010) piRNAs, transposon silencing, and Drosophila germline development. J Cell Biol 191: 905-913.
    • (2010) J Cell Biol , vol.191 , pp. 905-913
    • Khurana, J.S.1    Theurkauf, W.2
  • 6
    • 0036083480 scopus 로고    scopus 로고
    • miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis
    • DOI 10.1016/S1534-5807(02)00165-X
    • Deng W, Lin H (2002) miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. Dev Cell 2: 819-830. (Pubitemid 34650077)
    • (2002) Developmental Cell , vol.2 , Issue.6 , pp. 819-830
    • Deng, W.1    Lin, H.2
  • 7
    • 78650500890 scopus 로고    scopus 로고
    • Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training
    • Smalheiser NR, Lugli G, Thimmapuram J, Cook EH, Larson J (2011) Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training. RNA 17: 166-181.
    • (2011) RNA , vol.17 , pp. 166-181
    • Smalheiser, N.R.1    Lugli, G.2    Thimmapuram, J.3    Cook, E.H.4    Larson, J.5
  • 8
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
    • Lee YS, Shibata Y, Malhotra A, Dutta A (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev 23: 2639-2649.
    • (2009) Genes Dev , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 10
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev 22: 2773-2785.
    • (2008) Genes Dev , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 12
    • 0034175553 scopus 로고    scopus 로고
    • Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation
    • Chen X, Quinn AM, Wolin SL (2000) Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. Genes Dev 14: 777-782. (Pubitemid 30214997)
    • (2000) Genes and Development , vol.14 , Issue.7 , pp. 777-782
    • Chen, X.1    Quinn, A.M.2    Wolin, S.L.3
  • 13
    • 0029295552 scopus 로고
    • Caenorhabditis elegans embryos contain only one major species of Ro RNP
    • Van Horn DJ, Eisenberg D, O'Brien CA, Wolin SL (1995) Caenorhabditis elegans embryos contain only one major species of Ro RNP. RNA 1: 293-303.
    • (1995) RNA , vol.1 , pp. 293-303
    • Van Horn, D.J.1    Eisenberg, D.2    O'Brien, C.A.3    Wolin, S.L.4
  • 14
    • 34249660747 scopus 로고    scopus 로고
    • Ro-associated Y RNAs in metazoans: Evolution and diversification
    • DOI 10.1093/molbev/msm084
    • Perreault J, Perreault JP, Boire G (2007) Ro-associated Y RNAs in metazoans: evolution and diversification. Mol Biol Evol 24: 1678-1689. (Pubitemid 47236684)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1678-1689
    • Perreault, J.1    Perreault, J.-P.2    Boire, G.3
  • 15
    • 33748667563 scopus 로고    scopus 로고
    • Functional requirement of noncoding Y RNAs for human chromosomal DNA replication
    • DOI 10.1128/MCB.01060-06
    • Christov CP, Gardiner TJ, Szuts D, Krude T (2006) Functional requirement of noncoding Y RNAs for human chromosomal DNA replication. Mol Cell Biol 26: 6993-7004. (Pubitemid 44387647)
    • (2006) Molecular and Cellular Biology , vol.26 , Issue.18 , pp. 6993-7004
    • Christov, C.P.1    Gardiner, T.J.2    Szuts, D.3    Krude, T.4
  • 16
    • 84859897419 scopus 로고    scopus 로고
    • Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway
    • Nicolas FE, Hall AE, Csorba T, Turnbull C, Dalmay T (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Lett 586: 1226-1230.
    • (2012) FEBS Lett , vol.586 , pp. 1226-1230
    • Nicolas, F.E.1    Hall, A.E.2    Csorba, T.3    Turnbull, C.4    Dalmay, T.5
  • 17
    • 84864115832 scopus 로고    scopus 로고
    • Micro RNAs in the pineal gland: Mir-483 regulates melatonin synthesis by targeting arylalkylamine N-Acetyltransferase
    • Clokie SJ, Lau P, Kim HH, Coon SL, Klein D (2012) Micro RNAs in the pineal gland: mir-483 regulates melatonin synthesis by targeting arylalkylamine N-Acetyltransferase. J Biol Chem.
    • (2012) J Biol Chem
    • Clokie, S.J.1    Lau, P.2    Kim, H.H.3    Coon, S.L.4    Klein, D.5
  • 18
  • 20
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 25
    • 77949518999 scopus 로고    scopus 로고
    • emPAI Calc-for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry
    • Shinoda K, Tomita M, Ishihama Y (2010) emPAI Calc-for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry. Bioinformatics 26: 576-577.
    • (2010) Bioinformatics , vol.26 , pp. 576-577
    • Shinoda, K.1    Tomita, M.2    Ishihama, Y.3
  • 29
    • 23244449018 scopus 로고    scopus 로고
    • Activation of NMDA receptors induces protein kinase A-mediated phosphorylation and degradation of matrin 3. Blocking these effects prevents NMDA-induced neuronal death
    • DOI 10.1111/j.1471-4159.2005.03235.x
    • Giordano G, Sanchez-Perez AM, Montoliu C, Berezney R, Malyavantham K, et al. (2005) Activation of NMDA receptors induces protein kinase A-mediated phosphorylation and degradation of matrin 3. Blocking these effects prevents NMDA-induced neuronal death. J Neurochem 94: 808-818. (Pubitemid 41098512)
    • (2005) Journal of Neurochemistry , vol.94 , Issue.3 , pp. 808-818
    • Giordano, G.1    Sanchez-Perez, A.M.2    Montoliu, C.3    Berezney, R.4    Malyavantham, K.5    Costa, L.G.6    Calvete, J.J.7    Felipo, V.8
  • 33
    • 60149090021 scopus 로고    scopus 로고
    • The many pathways of RNA degradation
    • Houseley J, Tollervey D (2009) The many pathways of RNA degradation. Cell 136: 763-776.
    • (2009) Cell , vol.136 , pp. 763-776
    • Houseley, J.1    Tollervey, D.2
  • 35
    • 0026546830 scopus 로고
    • A recombinant retrovirus encoding alkaline phosphatase confirms clonal boundary assignment in lineage analysis of murine retina
    • Fields-Berry SC, Halliday AL, Cepko CL (1992) A recombinant retrovirus encoding alkaline phosphatase confirms clonal boundary assignment in lineage analysis of murine retina. Proc Natl Acad Sci U S A 89: 693-697.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 693-697
    • Fields-Berry, S.C.1    Halliday, A.L.2    Cepko, C.L.3
  • 37
    • 0025834953 scopus 로고
    • Molecular cloning of matrin 3: A 125-kilodalton protein of the nuclear matrix contains an extensive acidic domain
    • Belgrader P, Dey R, Berezney R (1991) Molecular cloning of matrin 3. A 125-kilodalton protein of the nuclear matrix contains an extensive acidic domain. J Biol Chem 266: 9893-9899. (Pubitemid 21906738)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.15 , pp. 9893-9899
    • Belgrader, P.1    Dey, R.2    Berezney, R.3
  • 38
    • 18544377013 scopus 로고    scopus 로고
    • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    • DOI 10.1111/j.1742-4658.2005.04653.x
    • Maris C, Dominguez C, Allain FH (2005) The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J 272: 2118-2131. (Pubitemid 40655326)
    • (2005) FEBS Journal , vol.272 , Issue.9 , pp. 2118-2131
    • Maris, C.1    Dominguez, C.2    Allain, F.H.-T.3
  • 41
    • 79952185328 scopus 로고    scopus 로고
    • Matrin 3 as a key regulator of endothelial cell survival
    • Przygodzka P, Boncela J, Cierniewski CS (2011) Matrin 3 as a key regulator of endothelial cell survival. Exp Cell Res 317: 802-811.
    • (2011) Exp Cell Res , vol.317 , pp. 802-811
    • Przygodzka, P.1    Boncela, J.2    Cierniewski, C.S.3
  • 42
    • 0344683235 scopus 로고    scopus 로고
    • National Research Council (U.S.). Committee for the Update of the Guide for the Care and Use of Laboratory Animals., Institute for Laboratory Animal Research (U.S.), National Academies Press (U.S.) Washington, D.C.: National Academies Press
    • National Research Council (U.S.). Committee for the Update of the Guide for the Care and Use of Laboratory Animals., Institute for Laboratory Animal Research (U.S.), National Academies Press (U.S.) (2011) Guide for the care and use of laboratory animals. Washington, D.C.: National Academies Press. xxv, 220 p. p.
    • (2011) Guide for the Care and Use of Laboratory Animals
  • 45
    • 34250777057 scopus 로고    scopus 로고
    • Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections
    • DOI 10.1038/nprot.2007.153, PII NPROT.2007.153
    • Obernosterer G, Martinez J, Alenius M (2007) Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections. Nat Protoc 2: 1508-1514. (Pubitemid 46952329)
    • (2007) Nature Protocols , vol.2 , Issue.6 , pp. 1508-1514
    • Obernosterer, G.1    Martinez, J.2    Alenius, M.3
  • 47
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • DOI 10.1074/mcp.M500061-MCP200
    • Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, et al. (2005) Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4: 1265-1272. (Pubitemid 41448714)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.9 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7
  • 48
    • 0035710746 scopus 로고    scopus 로고
    • -DeltaDeltaCT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.