-
1
-
-
77957357555
-
The Human Oral Microbiome
-
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, et al. (2010) The Human Oral Microbiome. J Bacteriol.
-
(2010)
J Bacteriol
-
-
Dewhirst, F.E.1
Chen, T.2
Izard, J.3
Paster, B.J.4
Tanner, A.C.5
-
2
-
-
79955530922
-
CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome
-
Griffen AL, Beall CJ, Firestone ND, Gross EL, DiFranco JM, et al. (2011) CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome. PLoS ONE 6: e19051.
-
(2011)
PLoS ONE
, vol.6
-
-
Griffen, A.L.1
Beall, C.J.2
Firestone, N.D.3
Gross, E.L.4
DiFranco, J.M.5
-
3
-
-
84861342868
-
Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing
-
Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, et al. (2012) Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. The ISME journal 6: 1176-1185.
-
(2012)
The ISME Journal
, vol.6
, pp. 1176-1185
-
-
Griffen, A.L.1
Beall, C.J.2
Campbell, J.H.3
Firestone, N.D.4
Kumar, P.S.5
-
4
-
-
0031989077
-
Microbial complexes in subgingival plaque
-
Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL Jr (1998) Microbial complexes in subgingival plaque. J Clin Periodontol 25: 134-144. (Pubitemid 128705944)
-
(1998)
Journal of Clinical Periodontology
, vol.25
, Issue.2
, pp. 134-144
-
-
Socransky, S.S.1
Haffajee, A.D.2
Cugini, M.A.3
Smith, C.4
Kent Jr., R.L.5
-
5
-
-
21744461011
-
Tannerella forsythia-induced alveolar bone loss in mice involves leucine-rich-repeat BspA protein
-
Sharma A, Inagaki S, Honma K, Sfintescu C, Baker PJ, et al. (2005) Tannerella forsythia-induced alveolar bone loss in mice involves leucine-rich-repeat BspA protein. Journal of dental research 84: 462-467. (Pubitemid 43827880)
-
(2005)
Journal of Dental Research
, vol.84
, Issue.5
, pp. 462-467
-
-
Sharma, A.1
Inagaki, S.2
Honma, K.3
Sfintescu, C.4
Baker, P.J.5
Evans, R.T.6
-
6
-
-
34147159390
-
Rat model of polymicrobial infection, immunity, and alveolar bone resorption in periodontal disease
-
DOI 10.1128/IAI.00733-06
-
Kesavalu L, Sathishkumar S, Bakthavatchalu V, Matthews C, Dawson D, et al. (2007) Rat model of polymicrobial infection, immunity, and alveolar bone resorption in periodontal disease. Infection and immunity 75: 1704-1712. (Pubitemid 46559435)
-
(2007)
Infection and Immunity
, vol.75
, Issue.4
, pp. 1704-1712
-
-
Kesavalu, L.1
Sathishkumar, S.2
Bakthavatchalu, V.3
Matthews, C.4
Dawson, D.5
Steffen, M.6
Ebersole, J.L.7
-
7
-
-
77955739936
-
Virulence mechanisms of Tannerella forsythia
-
Sharma A (2010) Virulence mechanisms of Tannerella forsythia. Periodontology 2000 54: 106-116.
-
(2010)
Periodontology 2000
, vol.54
, pp. 106-116
-
-
Sharma, A.1
-
8
-
-
0036197688
-
Association of Bacteroides forsythus and a novel Bacteroides phylotype with periodontitis
-
DOI 10.1128/JCM.40.3.821-825.2002
-
Leys EJ, Lyons SR, Moeschberger ML, Rumpf RW, Griffen AL (2002) Association of Bacteroides forsythus and a novel Bacteroides phylotype with periodontitis. J Clin Microbiol 40: 821-825. (Pubitemid 34208630)
-
(2002)
Journal of Clinical Microbiology
, vol.40
, Issue.3
, pp. 821-825
-
-
Leys, E.J.1
Lyons, S.R.2
Moeschberger, M.L.3
Rumpf, R.W.4
Griffen, A.L.5
-
9
-
-
10844234631
-
Culture-independent identification of periodontitis-associated Porphyromonas and Tannerella populations by targeted molecular analysis
-
DOI 10.1128/JCM.42.12.5523-5527.2004
-
de Lillo A, Booth V, Kyriacou L, Weightman AJ, Wade WG (2004) Culture-independent identification of periodontitis-associated Porphyromonas and Tannerella populations by targeted molecular analysis. J Clin Microbiol 42: 5523-5527. (Pubitemid 39664331)
-
(2004)
Journal of Clinical Microbiology
, vol.42
, Issue.12
, pp. 5523-5527
-
-
De Lillo, A.1
Booth, V.2
Kyriacou, L.3
Weightman, A.J.4
Wade, W.G.5
-
10
-
-
36448940855
-
Uncultivated Tannerella BU045 and BU063 are slim segmented filamentous rods of high prevalence but low abundance in inflammatory disease-associated dental plaques
-
DOI 10.1099/mic.0.2007/010926-0
-
Zuger J, Luthi-Schaller H, Gmur R (2007) Uncultivated Tannerella BU045 and BU063 are slim segmented filamentous rods of high prevalence but low abundance in inflammatory disease-associated dental plaques. Microbiology 153: 3809-3816. (Pubitemid 350168260)
-
(2007)
Microbiology
, vol.153
, Issue.11
, pp. 3809-3816
-
-
Zuger, J.1
Luthi-Schaller, H.2
Gmur, R.3
-
12
-
-
84870821244
-
Antivirulence genes: Insights into pathogen evolution through gene loss
-
Bliven KA, Maurelli AT (2012) Antivirulence genes: insights into pathogen evolution through gene loss. Infection and immunity 80: 4061-4070.
-
(2012)
Infection and Immunity
, vol.80
, pp. 4061-4070
-
-
Bliven, K.A.1
Maurelli, A.T.2
-
13
-
-
84875435385
-
Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity
-
Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, et al. (2013) Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity. PLoS ONE 8: e59361.
-
(2013)
PLoS ONE
, vol.8
-
-
Campbell, A.G.1
Campbell, J.H.2
Schwientek, P.3
Woyke, T.4
Sczyrba, A.5
-
14
-
-
84875828875
-
UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
-
Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, et al. (2013) UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. Proceedings of the National Academy of Sciences of the United States of America 110: 5540-5545.
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
, vol.110
, pp. 5540-5545
-
-
Campbell, J.H.1
O'Donoghue, P.2
Campbell, A.G.3
Schwientek, P.4
Sczyrba, A.5
-
15
-
-
34547540925
-
Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
DOI 10.1073/pnas.0704662104
-
Marcy Y, Ouverney C, Bik EM, Losekann T, Ivanova N, et al. (2007) Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proceedings of the National Academy of Sciences of the United States of America 104: 11889-11894. (Pubitemid 47185600)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.29
, pp. 11889-11894
-
-
Marcy, Y.1
Ouverney, C.2
Bik, E.M.3
Losekann, T.4
Ivanova, N.5
Martin, H.G.6
Szeto, E.7
Platt, D.8
Hugenholtz, P.9
Relman, D.A.10
Quake, S.R.11
-
16
-
-
84864384245
-
The "most wanted" taxa from the human microbiome for whole genome sequencing
-
Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, et al. (2012) The "most wanted" taxa from the human microbiome for whole genome sequencing. PLoS ONE 7: e41294.
-
(2012)
PLoS ONE
, vol.7
-
-
Fodor, A.A.1
DeSantis, T.Z.2
Wylie, K.M.3
Badger, J.H.4
Ye, Y.5
-
17
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, et al. (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of computational biology : a journal of computational molecular cell biology 19: 455-477.
-
(2012)
Journal of Computational Biology: A Journal of Computational Molecular Cell Biology
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
-
18
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
19
-
-
84864394611
-
Genomic sequencing of uncultured microorganisms from single cells
-
Lasken RS (2012) Genomic sequencing of uncultured microorganisms from single cells. Nature reviews Microbiology 10: 631-640.
-
(2012)
Nature Reviews Microbiology
, vol.10
, pp. 631-640
-
-
Lasken, R.S.1
-
20
-
-
69949116874
-
IMG ER: A system for microbial genome annotation expert review and curation
-
Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, et al. (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25: 2271-2278.
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Mavromatis, K.2
Ivanova, N.N.3
Chen, I.M.4
Chu, K.5
-
21
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic acids research 28: 33-36. (Pubitemid 30047708)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
22
-
-
84876096322
-
Genus VII. Tannerella
-
Krieg NR, Ludwig W, Whitman WB, Hedlund BP, Paster BJ et al., editors. The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. New York: Springer
-
Sakamoto M, Tanner ACR, Benno Y (2010) Genus VII. Tannerella. In: Krieg NR, Ludwig W, Whitman WB, Hedlund BP, Paster BJ et al., editors. Bergey's Manual of Systematic Bacteriology Volume 4: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. New York: Springer. pp. 78-84.
-
(2010)
Bergey's Manual of Systematic Bacteriology
, vol.4
, pp. 78-84
-
-
Sakamoto, M.1
Tanner, A.C.R.2
Benno, Y.3
-
24
-
-
0030781216
-
Cloning, expression, and sequencing of a protease gene from bacteroides forsythus ATCC 43037 in Escherichia coli
-
Saito T, Ishihara K, Kato T, Okuda K (1997) Cloning, expression, and sequencing of a protease gene from Bacteroides forsythus ATCC 43037 in Escherichia coli. Infection and immunity 65: 4888-4891. (Pubitemid 27463275)
-
(1997)
Infection and Immunity
, vol.65
, Issue.11
, pp. 4888-4891
-
-
Saito, T.1
Ishihara, K.2
Kato, T.3
Okuda, K.4
-
25
-
-
33750366553
-
Isolation and identification of a cytopathic activity in Tannerella forsythia
-
DOI 10.1016/j.bbrc.2006.10.012, PII S0006291X06022327
-
Nakajima T, Tomi N, Fukuyo Y, Ishikura H, Ohno Y, et al. (2006) Isolation and identification of a cytopathic activity in Tannerella forsythia. Biochemical and biophysical research communications 351: 133-139. (Pubitemid 44635416)
-
(2006)
Biochemical and Biophysical Research Communications
, vol.351
, Issue.1
, pp. 133-139
-
-
Nakajima, T.1
Tomi, N.2
Fukuyo, Y.3
Ishikura, H.4
Ohno, Y.5
Arvind, R.6
Arai, T.7
Ishikawa, I.8
Arakawa, S.9
-
26
-
-
39749190907
-
Pro-inflammatory cytokine production from normal human fibroblasts is induced by Tannerella forsythia detaching factor
-
Tomi N, Fukuyo Y, Arakawa S, Nakajima T (2008) Pro-inflammatory cytokine production from normal human fibroblasts is induced by Tannerella forsythia detaching factor. Journal of periodontal research 43: 136-142.
-
(2008)
Journal of Periodontal Research
, vol.43
, pp. 136-142
-
-
Tomi, N.1
Fukuyo, Y.2
Arakawa, S.3
Nakajima, T.4
-
27
-
-
65949094575
-
Prediction of a caspase-like fold in Tannerella forsythia virulence factor PrtH
-
Pei J, Grishin NV (2009) Prediction of a caspase-like fold in Tannerella forsythia virulence factor PrtH. Cell cycle 8: 1453-1455.
-
(2009)
Cell Cycle
, vol.8
, pp. 1453-1455
-
-
Pei, J.1
Grishin, N.V.2
-
28
-
-
84857463226
-
A metalloproteinase karilysin present in the majority of Tannerella forsythia isolates inhibits all pathways of the complement system
-
Jusko M, Potempa J, Karim AY, Ksiazek M, Riesbeck K, et al. (2012) A metalloproteinase karilysin present in the majority of Tannerella forsythia isolates inhibits all pathways of the complement system. Journal of immunology 188: 2338-2349.
-
(2012)
Journal of Immunology
, vol.188
, pp. 2338-2349
-
-
Jusko, M.1
Potempa, J.2
Karim, A.Y.3
Ksiazek, M.4
Riesbeck, K.5
-
29
-
-
75149177562
-
A novel matrix metalloprotease-like enzyme (karilysin) of the periodontal pathogen Tannerella forsythia ATCC 43037
-
Karim AY, Kulczycka M, Kantyka T, Dubin G, Jabaiah A, et al. (2010) A novel matrix metalloprotease-like enzyme (karilysin) of the periodontal pathogen Tannerella forsythia ATCC 43037. Biological chemistry 391: 105-117.
-
(2010)
Biological Chemistry
, vol.391
, pp. 105-117
-
-
Karim, A.Y.1
Kulczycka, M.2
Kantyka, T.3
Dubin, G.4
Jabaiah, A.5
-
30
-
-
0031797896
-
Cloning, expression, and sequencing of a cell surface antigen containing a leucine-rich repeat motif from Bacteroides forsythus ATCC 43037
-
Sharma A, Sojar HT, Glurich I, Honma K, Kuramitsu HK, et al. (1998) Cloning, expression, and sequencing of a cell surface antigen containing a leucine-rich repeat motif from Bacteroides forsythus ATCC 43037. Infection and immunity 66: 5703-5710. (Pubitemid 28531825)
-
(1998)
Infection and Immunity
, vol.66
, Issue.12
, pp. 5703-5710
-
-
Sharma, A.1
Sojar, H.T.2
Glurich, I.3
Honma, K.4
Kuramitsu, H.K.5
Genco, R.J.6
-
31
-
-
77952958875
-
Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module
-
Mello LV, Chen X, Rigden DJ (2010) Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module. FEBS letters 584: 2421-2426.
-
(2010)
FEBS Letters
, vol.584
, pp. 2421-2426
-
-
Mello, L.V.1
Chen, X.2
Rigden, D.J.3
-
32
-
-
33748038463
-
Porphyromonas gingivalis vesicles enhance attachment, and the leucine-rich repeat BspA protein is required for invasion of epithelial cells by "Tannerella forsythia"
-
DOI 10.1128/IAI.00062-06
-
Inagaki S, Onishi S, Kuramitsu HK, Sharma A (2006) Porphyromonas gingivalis vesicles enhance attachment, and the leucine-rich repeat BspA protein is required for invasion of epithelial cells by "Tannerella forsythia". Infection and immunity 74: 5023-5028. (Pubitemid 44300420)
-
(2006)
Infection and Immunity
, vol.74
, Issue.9
, pp. 5023-5028
-
-
Inagaki, S.1
Onishi, S.2
Kuramitsu, H.K.3
Sharma, A.4
-
33
-
-
37749047803
-
Toll-like receptor 2-mediated interleukin-8 expression in gingival epithelial cells by the Tannerella forsythia leucine-rich repeat protein BspA
-
Onishi S, Honma K, Liang S, Stathopoulou P, Kinane D, et al. (2008) Toll-like receptor 2-mediated interleukin-8 expression in gingival epithelial cells by the Tannerella forsythia leucine-rich repeat protein BspA. Infection and immunity 76: 198-205.
-
(2008)
Infection and Immunity
, vol.76
, pp. 198-205
-
-
Onishi, S.1
Honma, K.2
Liang, S.3
Stathopoulou, P.4
Kinane, D.5
-
34
-
-
77951053020
-
A novel sialic acid utilization and uptake system in the periodontal pathogen Tannerella forsythia
-
Roy S, Douglas CW, Stafford GP (2010) A novel sialic acid utilization and uptake system in the periodontal pathogen Tannerella forsythia. Journal of bacteriology 192: 2285-2293.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 2285-2293
-
-
Roy, S.1
Douglas, C.W.2
Stafford, G.P.3
-
35
-
-
80155132436
-
Role of sialidase in glycoprotein utilization by Tannerella forsythia
-
Roy S, Honma K, Douglas CW, Sharma A, Stafford GP (2011) Role of sialidase in glycoprotein utilization by Tannerella forsythia. Microbiology 157: 3195-3202.
-
(2011)
Microbiology
, vol.157
, pp. 3195-3202
-
-
Roy, S.1
Honma, K.2
Douglas, C.W.3
Sharma, A.4
Stafford, G.P.5
-
36
-
-
78650912796
-
Role of Tannerella forsythia NanH sialidase in epithelial cell attachment
-
Honma K, Mishima E, Sharma A (2011) Role of Tannerella forsythia NanH sialidase in epithelial cell attachment. Infection and immunity 79: 393-401.
-
(2011)
Infection and Immunity
, vol.79
, pp. 393-401
-
-
Honma, K.1
Mishima, E.2
Sharma, A.3
-
37
-
-
33645210489
-
Identification and characterization of the genes encoding a unique surface (S-) layer of Tannerella forsythia
-
Lee SW, Sabet M, Um HS, Yang J, Kim HC, et al. (2006) Identification and characterization of the genes encoding a unique surface (S-) layer of Tannerella forsythia. Gene 371: 102-111.
-
(2006)
Gene
, vol.371
, pp. 102-111
-
-
Lee, S.W.1
Sabet, M.2
Um, H.S.3
Yang, J.4
Kim, H.C.5
-
38
-
-
33847779192
-
Phase-variable expression of a family of glycoproteins imparts a dynamic surface to a symbiont in its human intestinal ecosystem
-
DOI 10.1073/pnas.0608797104
-
Fletcher CM, Coyne MJ, Bentley DL, Villa OF, Comstock LE (2007) Phase-variable expression of a family of glycoproteins imparts a dynamic surface to a symbiont in its human intestinal ecosystem. Proceedings of the National Academy of Sciences of the United States of America 104: 2413-2418. (Pubitemid 46391411)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.7
, pp. 2413-2418
-
-
Fletcher, C.M.1
Coyne, M.J.2
Bentley, D.L.3
Villa, O.F.4
Comstock, L.E.5
-
39
-
-
80055084408
-
Characterization and scope of S-layer protein O-glycosylation in Tannerella forsythia
-
Posch G, Pabst M, Brecker L, Altmann F, Messner P, et al. (2011) Characterization and scope of S-layer protein O-glycosylation in Tannerella forsythia. The Journal of biological chemistry 286: 38714-38724.
-
(2011)
The Journal of Biological Chemistry
, vol.286
, pp. 38714-38724
-
-
Posch, G.1
Pabst, M.2
Brecker, L.3
Altmann, F.4
Messner, P.5
-
40
-
-
33947428014
-
Loss of adherence ability to human gingival epithelial cells in S-layer protein-deficient mutants of Tannerella forsythensis
-
DOI 10.1099/mic.0.29275-0
-
Sakakibara J, Nagano K, Murakami Y, Higuchi N, Nakamura H, et al. (2007) Loss of adherence ability to human gingival epithelial cells in S-layer protein-deficient mutants of Tannerella forsythensis. Microbiology 153: 866-876. (Pubitemid 46444384)
-
(2007)
Microbiology
, vol.153
, Issue.3
, pp. 866-876
-
-
Sakakibara, J.1
Nagano, K.2
Murakami, Y.3
Higuchi, N.4
Nakamura, H.5
Shimozato, K.6
Yoshimura, F.7
-
41
-
-
84875516931
-
The S-layer of Tannerella forsythia contributes to serum resistance and oral bacterial co-aggregation
-
Shimotahira N, Oogai Y, Kawada-Matsuo M, Yamada S, Fukutsuji K, et al. (2013) The S-layer of Tannerella forsythia contributes to serum resistance and oral bacterial co-aggregation. Infection and immunity 81: 1198-1206.
-
(2013)
Infection and Immunity
, vol.81
, pp. 1198-1206
-
-
Shimotahira, N.1
Oogai, Y.2
Kawada-Matsuo, M.3
Yamada, S.4
Fukutsuji, K.5
-
42
-
-
34047275924
-
Role of a Tannerella forsythia exopolysaccharide synthesis operon in biofilm development
-
DOI 10.1016/j.micpath.2007.01.003, PII S0882401007000046
-
Honma K, Inagaki S, Okuda K, Kuramitsu HK, Sharma A (2007) Role of a Tannerella forsythia exopolysaccharide synthesis operon in biofilm development. Microbial pathogenesis 42: 156-166. (Pubitemid 46551642)
-
(2007)
Microbial Pathogenesis
, vol.42
, Issue.4
, pp. 156-166
-
-
Honma, K.1
Inagaki, S.2
Okuda, K.3
Kuramitsu, H.K.4
Sharma, A.5
-
43
-
-
84874067867
-
A bacterial glycan core linked to surface (S)-layer proteins modulates host immunity through Th17 suppression
-
Settem RP, Honma K, Nakajima T, Phansopa C, Roy S, et al. (2013) A bacterial glycan core linked to surface (S)-layer proteins modulates host immunity through Th17 suppression. Mucosal Immunol 6: 415-426.
-
(2013)
Mucosal Immunol
, vol.6
, pp. 415-426
-
-
Settem, R.P.1
Honma, K.2
Nakajima, T.3
Phansopa, C.4
Roy, S.5
-
44
-
-
1642322844
-
Glucose toxicity effect and accumulation of methylglyoxal by the periodontal anaerobe Bacteroides forsythus
-
DOI 10.1016/j.anaerobe.2003.12.001, PII S1075996403001720
-
Maiden MF, Pham C, Kashket S (2004) Glucose toxicity effect and accumulation of methylglyoxal by the periodontal anaerobe Bacteroides forsythus. Anaerobe 10: 27-32. (Pubitemid 38368884)
-
(2004)
Anaerobe
, vol.10
, Issue.1
, pp. 27-32
-
-
Maiden, M.F.J.1
Pham, C.2
Kashket, S.3
-
45
-
-
84876842615
-
The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation
-
Abusleme L, Dupuy AK, Dutzan N, Silva N, Burleson JA, et al. (2013) The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation. The ISME journal 7: 1016-1025.
-
(2013)
The ISME Journal
, vol.7
, pp. 1016-1025
-
-
Abusleme, L.1
Dupuy, A.K.2
Dutzan, N.3
Silva, N.4
Burleson, J.A.5
-
46
-
-
84862286169
-
A framework for human microbiome research
-
Consortium THMP
-
Consortium THMP (2012) A framework for human microbiome research. Nature 486: 215-221.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
47
-
-
84876080407
-
Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.
-
Downes J, Dewhirst FE, Tanner AC, Wade WG (2013) Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov. International Journal of Systematic and Evolutionary Microbiology 63: 1214-1218.
-
(2013)
International Journal of Systematic and Evolutionary Microbiology
, vol.63
, pp. 1214-1218
-
-
Downes, J.1
Dewhirst, F.E.2
Tanner, A.C.3
Wade, W.G.4
-
49
-
-
78049425463
-
Evidence of selection upon genomic GC-content in bacteria
-
Hildebrand F, Meyer A, Eyre-Walker A (2010) Evidence of selection upon genomic GC-content in bacteria. PLoS genetics 6: e1001107.
-
(2010)
PLoS Genetics
, vol.6
-
-
Hildebrand, F.1
Meyer, A.2
Eyre-Walker, A.3
-
51
-
-
84864483625
-
RobiNA: A user-friendly, integrated software solution for RNA-Seq-based transcriptomics
-
Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, et al. (2012) RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic acids research 40: W622-627.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Lohse, M.1
Bolger, A.M.2
Nagel, A.3
Fernie, A.R.4
Lunn, J.E.5
-
52
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, et al. (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Giga-Science 1: 18.
-
(2012)
Giga-Science
, vol.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
-
53
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research 18: 821-829. (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
54
-
-
80054732674
-
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
-
Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, et al. (2011) Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nature biotechnology 29: 915-921.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 915-921
-
-
Chitsaz, H.1
Yee-Greenbaum, J.L.2
Tesler, G.3
Lombardo, M.J.4
Dupont, C.L.5
-
56
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
Kent WJ (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
57
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
|