메뉴 건너뛰기




Volumn 159, Issue 2, 2014, Pages 389-398

Three proposed new bacteriophage genera of staphylococcal phages: "3alikevirus", "77likevirus" and "Phietalikevirus"

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

EID: 84895075775     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1833-1     Document Type: Article
Times cited : (18)

References (47)
  • 1
    • 49149115195 scopus 로고    scopus 로고
    • Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
    • Lavigne R, Seto D, Mahadevan P, Ackermann HW, Kropinski AM (2008) Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools. Res Microbiol 159: 406-414.
    • (2008) Res Microbiol , vol.159 , pp. 406-414
    • Lavigne, R.1    Seto, D.2    Mahadevan, P.3    Ackermann, H.W.4    Kropinski, A.M.5
  • 4
    • 17044437752 scopus 로고    scopus 로고
    • The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
    • Kwan T, Liu J, DuBow M, Gros P, Pelletier J (2005) The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci USA 102: 5174-5179.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5174-5179
    • Kwan, T.1    Liu, J.2    DuBow, M.3    Gros, P.4    Pelletier, J.5
  • 6
    • 77049109494 scopus 로고    scopus 로고
    • CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb
    • Mahadevan P, King JF, Seto D (2009) CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1. 9 Mb. BMC Res Notes 2: 168.
    • (2009) BMC Res Notes , vol.2 , pp. 168
    • Mahadevan, P.1    King, J.F.2    Seto, D.3
  • 7
    • 77953658770 scopus 로고    scopus 로고
    • Data mining pathogen genomes using GeneOrder, CoreGenes and CGUG: gene order, synteny, and in silico proteomes
    • Mahadevan P, King JF, Seto D (2009) Data mining pathogen genomes using GeneOrder, CoreGenes and CGUG: gene order, synteny, and in silico proteomes. Int J Comput Biol Drug Des 2: 100-114.
    • (2009) Int J Comput Biol Drug Des , vol.2 , pp. 100-114
    • Mahadevan, P.1    King, J.F.2    Seto, D.3
  • 8
    • 0642342573 scopus 로고    scopus 로고
    • CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes
    • Zafar N, Mazumder R, Seto D (2002) CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes. BMC Bioinforma 3: 12.
    • (2002) BMC Bioinforma , vol.3 , pp. 12
    • Zafar, N.1    Mazumder, R.2    Seto, D.3
  • 9
    • 0035153828 scopus 로고    scopus 로고
    • Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages
    • Brüssow H, Desiere F (2001) Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol Microbiol 39: 213-222.
    • (2001) Mol Microbiol , vol.39 , pp. 213-222
    • Brüssow, H.1    Desiere, F.2
  • 13
    • 0036330981 scopus 로고    scopus 로고
    • The phage proteomic tree: a genome-based taxonomy for phage
    • Rohwer F, Edwards R (2002) The phage proteomic tree: a genome-based taxonomy for phage. J Bacteriol 184: 4529-4535.
    • (2002) J Bacteriol , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 14
    • 32044436032 scopus 로고    scopus 로고
    • Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses
    • Pride DT, Wassenaar TM, Ghose C, Blaser MJ (2006) Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics 7: 8.
    • (2006) BMC Genomics , vol.7 , pp. 8
    • Pride, D.T.1    Wassenaar, T.M.2    Ghose, C.3    Blaser, M.J.4
  • 15
    • 40849126681 scopus 로고    scopus 로고
    • Reticulate representation of evolutionary and functional relationships between phage genomes
    • Lima-Mendez G, van Helden J, Toussaint A, Leplae R (2008) Reticulate representation of evolutionary and functional relationships between phage genomes. Mol Biol Evol 25: 762-777.
    • (2008) Mol Biol Evol , vol.25 , pp. 762-777
    • Lima-Mendez, G.1    van Helden, J.2    Toussaint, A.3    Leplae, R.4
  • 17
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: small is beautiful
    • Brüssow H, Hendrix RW (2002) Phage genomics: small is beautiful. Cell 108: 13-16.
    • (2002) Cell , vol.108 , pp. 13-16
    • Brüssow, H.1    Hendrix, R.W.2
  • 18
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage
    • Hendrix RW, Smith MC, Burns RN, Ford ME, Hatfull GF (1999) Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc Natl Acad Sci USA 96: 2192-2197.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 19
    • 0036719291 scopus 로고    scopus 로고
    • Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches
    • Lawrence JG, Hatfull GF, Hendrix RW (2002) Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches. J Bacteriol 184: 4891-4905.
    • (2002) J Bacteriol , vol.184 , pp. 4891-4905
    • Lawrence, J.G.1    Hatfull, G.F.2    Hendrix, R.W.3
  • 21
    • 73249123201 scopus 로고    scopus 로고
    • Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment
    • García P, Martínez B, Obeso JM, Lavigne R, Lurz R, Rodríguez A (2009) Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment. Appl Environ Microbiol 75: 7663-7673.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7663-7673
    • García, P.1    Martínez, B.2    Obeso, J.M.3    Lavigne, R.4    Lurz, R.5    Rodríguez, A.6
  • 22
    • 0035795580 scopus 로고    scopus 로고
    • Phage conversion of Panton-Valentine leukocidin in Staphylococcus aureus: molecular analysis of a PVL-converting phage, phiSLT
    • Narita S, Kaneko J, Chiba J, Piémont Y, Jarraud S, Etienne J, Kamio Y (2001) Phage conversion of Panton-Valentine leukocidin in Staphylococcus aureus: molecular analysis of a PVL-converting phage, phiSLT. Gene 268: 195-206.
    • (2001) Gene , vol.268 , pp. 195-206
    • Narita, S.1    Kaneko, J.2    Chiba, J.3    Piémont, Y.4    Jarraud, S.5    Etienne, J.6    Kamio, Y.7
  • 26
    • 34548671924 scopus 로고    scopus 로고
    • Immunoglobulin-like domains on bacteriophage: weapons of modest damage?
    • Fraser JS, Maxwell KL, Davidson AR (2007) Immunoglobulin-like domains on bacteriophage: weapons of modest damage? Curr Opin Microbiol 10: 382-387.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 382-387
    • Fraser, J.S.1    Maxwell, K.L.2    Davidson, A.R.3
  • 27
    • 0031785168 scopus 로고    scopus 로고
    • Penetration of the bacterial cell wall: a family of lytic transglycosylases in bacteriophages and conjugative plasmids
    • Lehnherr H, Hansen AM, Ilyina T (1998) Penetration of the bacterial cell wall: a family of lytic transglycosylases in bacteriophages and conjugative plasmids. Mol Microbiol 30: 454-457.
    • (1998) Mol Microbiol , vol.30 , pp. 454-457
    • Lehnherr, H.1    Hansen, A.M.2    Ilyina, T.3
  • 29
    • 33751384637 scopus 로고    scopus 로고
    • A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells
    • Piuri M, Hatfull GF (2006) A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells. Mol Microbiol 62: 1569-1585.
    • (2006) Mol Microbiol , vol.62 , pp. 1569-1585
    • Piuri, M.1    Hatfull, G.F.2
  • 30
    • 46649087608 scopus 로고    scopus 로고
    • Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities
    • Boulanger P, Jacquot P, Plançon L, Chami M, Engel A, Parquet C, Herbeuval C, Letellier L (2008) Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities. J Biol Chem 283: 13556-13564.
    • (2008) J Biol Chem , vol.283 , pp. 13556-13564
    • Boulanger, P.1    Jacquot, P.2    Plançon, L.3    Chami, M.4    Engel, A.5    Parquet, C.6    Herbeuval, C.7    Letellier, L.8
  • 31
    • 1442300823 scopus 로고    scopus 로고
    • Peptidoglycan hydrolytic activities associated with bacteriophage virions
    • Moak M, Molineux IJ (2004) Peptidoglycan hydrolytic activities associated with bacteriophage virions. Mol Microbiol 51: 1169-1183.
    • (2004) Mol Microbiol , vol.51 , pp. 1169-1183
    • Moak, M.1    Molineux, I.J.2
  • 32
    • 0000250208 scopus 로고
    • The growth of bacteriophage and lysis of the host
    • Delbrück M (1940) The growth of bacteriophage and lysis of the host. J Gen Physiol 23: 643-660.
    • (1940) J Gen Physiol , vol.23 , pp. 643-660
    • Delbrück, M.1
  • 33
    • 80055121440 scopus 로고    scopus 로고
    • Lysis from without
    • Abedon ST (2011) Lysis from without. Bacteriophage 1: 46-49.
    • (2011) Bacteriophage , vol.1 , pp. 46-49
    • Abedon, S.T.1
  • 34
    • 79958861499 scopus 로고    scopus 로고
    • Lytic activity of the virion-associated peptidoglycan hydrolase HydH5 of Staphylococcus aureus bacteriophage vB_SauS-phiIPLA88
    • doi:10.1186/1471-2180-11-138
    • Rodríguez L, Martínez B, Zhou Y, Rodríguez A, Donovan DM, García P (2011) Lytic activity of the virion-associated peptidoglycan hydrolase HydH5 of Staphylococcus aureus bacteriophage vB_SauS-phiIPLA88. BMC Microbiol 11: 138. doi: 10. 1186/1471-2180-11-138.
    • (2011) BMC Microbiol , vol.11 , pp. 138
    • Rodríguez, L.1    Martínez, B.2    Zhou, Y.3    Rodríguez, A.4    Donovan, D.M.5    García, P.6
  • 36
    • 0033913999 scopus 로고    scopus 로고
    • Bacteriophage PRD1 DNA entry uses a viral membrane-associated transglycosylase activity
    • Rydman PS, Bamford DH (2000) Bacteriophage PRD1 DNA entry uses a viral membrane-associated transglycosylase activity. Mol Microbiol 37: 356-363.
    • (2000) Mol Microbiol , vol.37 , pp. 356-363
    • Rydman, P.S.1    Bamford, D.H.2
  • 37
    • 60249097583 scopus 로고    scopus 로고
    • The SGNH-hydrolase of Streptomyces coelicolor has (aryl)esterase and a true lipase activity
    • Bielen A, Cetković H, Long PF, Schwab H, Abramić M, Vujaklija D (2009) The SGNH-hydrolase of Streptomyces coelicolor has (aryl)esterase and a true lipase activity. Biochimie 91: 390-400.
    • (2009) Biochimie , vol.91 , pp. 390-400
    • Bielen, A.1    Cetković, H.2    Long, P.F.3    Schwab, H.4    Abramić, M.5    Vujaklija, D.6
  • 38
    • 84861951551 scopus 로고    scopus 로고
    • Genomic characterization of two Staphylococcus epidermidis bacteriophages with anti-biofilm potential
    • doi:10.1186/1471-2164-13-228
    • Gutiérrez D, Martínez B, Rodríguez A, García P (2012) Genomic characterization of two Staphylococcus epidermidis bacteriophages with anti-biofilm potential. BMC Genomics 13: 228. doi: 10. 1186/1471-2164-13-228.
    • (2012) BMC Genomics , vol.13 , pp. 228
    • Gutiérrez, D.1    Martínez, B.2    Rodríguez, A.3    García, P.4
  • 40
    • 33845595403 scopus 로고
    • Predominance of clones carrying Panton-Valentine leukocidin genes among methicillin-resistant Staphylococcus aureus strains isolated in Japanese hospitals from 1979 to 1985
    • Ma XX, Ito T, Chongtrakool P, Hiramatsu K (1985) Predominance of clones carrying Panton-Valentine leukocidin genes among methicillin-resistant Staphylococcus aureus strains isolated in Japanese hospitals from 1979 to 1985. J Clin Microbiol 44: 4515-4527.
    • (1985) J Clin Microbiol , vol.44 , pp. 4515-4527
    • Ma, X.X.1    Ito, T.2    Chongtrakool, P.3    Hiramatsu, K.4
  • 42
    • 77957677710 scopus 로고    scopus 로고
    • The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α-implications for the specificity of SaPI mobilization
    • Christie GE, Matthews AM, King DG, Lane KD, Olivarez NP, Tallent SM, Gill SR, Novick RP (2010) The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α-implications for the specificity of SaPI mobilization. Virology 407: 381-390.
    • (2010) Virology , vol.407 , pp. 381-390
    • Christie, G.E.1    Matthews, A.M.2    King, D.G.3    Lane, K.D.4    Olivarez, N.P.5    Tallent, S.M.6    Gill, S.R.7    Novick, R.P.8
  • 44
    • 33750429636 scopus 로고    scopus 로고
    • Prophages of Staphylococcus aureus Newman and their contribution to virulence
    • Bae T, Baba T, Hiramatsu K, Schneewind O (2006) Prophages of Staphylococcus aureus Newman and their contribution to virulence. Mol Microbiol 62: 1035-1047.
    • (2006) Mol Microbiol , vol.62 , pp. 1035-1047
    • Bae, T.1    Baba, T.2    Hiramatsu, K.3    Schneewind, O.4
  • 45
    • 77950847429 scopus 로고    scopus 로고
    • Isolation and characterization of a novel Staphylococcus aureus bacteriophage, phiMR25, and its therapeutic potential
    • Hoshiba H, Uchiyama J, Kato S, Ujihara T, Muraoka A, Daibata M, Wakiguchi H, Matsuzaki S (2010) Isolation and characterization of a novel Staphylococcus aureus bacteriophage, phiMR25, and its therapeutic potential. Arch Virol 155: 545-552.
    • (2010) Arch Virol , vol.155 , pp. 545-552
    • Hoshiba, H.1    Uchiyama, J.2    Kato, S.3    Ujihara, T.4    Muraoka, A.5    Daibata, M.6    Wakiguchi, H.7    Matsuzaki, S.8
  • 46
    • 33947378344 scopus 로고    scopus 로고
    • First complete genome sequence of two Staphylococcus epidermidis bacteriophages
    • Daniel A, Bonnen PE, Fischetti VA (2007) First complete genome sequence of two Staphylococcus epidermidis bacteriophages. J Bacteriol 189: 2086-2100.
    • (2007) J Bacteriol , vol.189 , pp. 2086-2100
    • Daniel, A.1    Bonnen, P.E.2    Fischetti, V.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.