-
1
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P & Engstrand L (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3: e2836.
-
(2008)
PLoS ONE
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
2
-
-
84858709310
-
Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis
-
Bahl MI, Bergstrom A & Licht TR (2012) Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol Lett 329: 193-197.
-
(2012)
FEMS Microbiol Lett
, vol.329
, pp. 193-197
-
-
Bahl, M.I.1
Bergstrom, A.2
Licht, T.R.3
-
3
-
-
84861385390
-
Comparison of storage conditions for human vaginal microbiome studies
-
Bai G, Gajer P, Nandy M et al. (2012) Comparison of storage conditions for human vaginal microbiome studies. PLoS ONE 7: e36934.
-
(2012)
PLoS ONE
, vol.7
-
-
Bai, G.1
Gajer, P.2
Nandy, M.3
-
4
-
-
84867422607
-
Effect of maternal probiotic intervention on HPA axis, immunity and gut microbiota in a rat model of irritable bowel syndrome
-
Barouei J, Moussavi M & Hodgson DM (2012) Effect of maternal probiotic intervention on HPA axis, immunity and gut microbiota in a rat model of irritable bowel syndrome. PLoS ONE 7: e46051.
-
(2012)
PLoS ONE
, vol.7
-
-
Barouei, J.1
Moussavi, M.2
Hodgson, D.M.3
-
5
-
-
84873624339
-
Probiotic mechanisms of action
-
Bermudez-Brito M, Plaza-Diaz J, Munoz-Quezada S, Gomez-Llorente C & Gil A (2012) Probiotic mechanisms of action. Ann Nutr Metab 61: 160-174.
-
(2012)
Ann Nutr Metab
, vol.61
, pp. 160-174
-
-
Bermudez-Brito, M.1
Plaza-Diaz, J.2
Munoz-Quezada, S.3
Gomez-Llorente, C.4
Gil, A.5
-
6
-
-
84864344549
-
Storage conditions of intestinal microbiota matter in metagenomic analysis
-
Cardona S, Eck A, Cassellas M et al. (2012) Storage conditions of intestinal microbiota matter in metagenomic analysis. BMC Microbiol 12: 158.
-
(2012)
BMC Microbiol
, vol.12
, pp. 158
-
-
Cardona, S.1
Eck, A.2
Cassellas, M.3
-
7
-
-
33747016766
-
Growth improvement by probiotic in European sea bass juveniles (Dicentrarchus labrax, L.), with particular attention to IGF-1, myostatin and cortisol gene expression
-
Carnevali O, de Vivo L, Sulpizio R, Gioacchini G, Olivotto I, Silvi S & Cresci A (2006) Growth improvement by probiotic in European sea bass juveniles (Dicentrarchus labrax, L.), with particular attention to IGF-1, myostatin and cortisol gene expression. Aquaculture 258: 430-438.
-
(2006)
Aquaculture
, vol.258
, pp. 430-438
-
-
Carnevali, O.1
de Vivo, L.2
Sulpizio, R.3
Gioacchini, G.4
Olivotto, I.5
Silvi, S.6
Cresci, A.7
-
8
-
-
79953273230
-
Convergent dynamics of the juvenile European sea bass gut microbiota induced by poly-beta-hydroxybutyrate
-
De Schryver P, Dierckens K, Thi QQ et al. (2011) Convergent dynamics of the juvenile European sea bass gut microbiota induced by poly-beta-hydroxybutyrate. Environ Microbiol 13: 1042-1051.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1042-1051
-
-
De Schryver, P.1
Dierckens, K.2
Thi, Q.Q.3
-
9
-
-
79959307336
-
Alternatives to antibiotics for the control of bacterial disease in aquaculture
-
Defoirdt T, Sorgeloos P & Bossier P (2011) Alternatives to antibiotics for the control of bacterial disease in aquaculture. Curr Opin Microbiol 14: 251-258.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 251-258
-
-
Defoirdt, T.1
Sorgeloos, P.2
Bossier, P.3
-
10
-
-
78650679799
-
Assessing gut microbial diversity from feces and rectal mucosa
-
Durban A, Abellan JJ, Jimenez-Hernandez N et al. (2011) Assessing gut microbial diversity from feces and rectal mucosa. Microb Ecol 61: 123-133.
-
(2011)
Microb Ecol
, vol.61
, pp. 123-133
-
-
Durban, A.1
Abellan, J.J.2
Jimenez-Hernandez, N.3
-
12
-
-
77955819988
-
The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus)
-
Ferguson RM, Merrifield DL, Harper GM et al. (2010) The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus). J Appl Microbiol 109: 851-862.
-
(2010)
J Appl Microbiol
, vol.109
, pp. 851-862
-
-
Ferguson, R.M.1
Merrifield, D.L.2
Harper, G.M.3
-
13
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C & Knight R (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
15
-
-
67649811084
-
Changes in composition of culturable bacteria community in the gut of the formosan subterranean termite depending on rearing condition of host
-
Husseneder C, Berestecky JM & Grace JC (2009) Changes in composition of culturable bacteria community in the gut of the formosan subterranean termite depending on rearing condition of host. Annals Entomol Soc Am 102: 498-507.
-
(2009)
Annals Entomol Soc Am
, vol.102
, pp. 498-507
-
-
Husseneder, C.1
Berestecky, J.M.2
Grace, J.C.3
-
16
-
-
80355133515
-
Diet supplemented with probiotic for Nile tilapia in polyculture system with marine shrimp
-
Jatoba A, Vieira Fdo N, Buglione-Neto CC, Mourino JL, Silva BC, Seiftter WQ & Andreatta ER (2011) Diet supplemented with probiotic for Nile tilapia in polyculture system with marine shrimp. Fish Physiol Biochem 37: 725-732.
-
(2011)
Fish Physiol Biochem
, vol.37
, pp. 725-732
-
-
Jatoba, A.1
Vieira Fdo, N.2
Buglione-Neto, C.C.3
Mourino, J.L.4
Silva, B.C.5
Seiftter, W.Q.6
Andreatta, E.R.7
-
17
-
-
54349102092
-
Utilização de bactérias ácido-lácticas isoladas do trato intestinal de tilápia-do-nilo como probiótico
-
Jatobá A, Vieira F & Buglione Neto C et al. (2008) Utilização de bactérias ácido-lácticas isoladas do trato intestinal de tilápia-do-nilo como probiótico. Pesquisa Agropecuária Brasileira 43: 1201-1207.
-
(2008)
Pesquisa Agropecuária Brasileira
, vol.43
, pp. 1201-1207
-
-
Jatobá, A.1
Vieira, F.2
Buglione Neto, C.3
-
18
-
-
34250639282
-
Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
-
Kim DH, Brunt J & Austin B (2007) Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). J Appl Microbiol 102: 1654-1664.
-
(2007)
J Appl Microbiol
, vol.102
, pp. 1654-1664
-
-
Kim, D.H.1
Brunt, J.2
Austin, B.3
-
19
-
-
33748713890
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M & Knight R (2006) UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7: 371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
20
-
-
34548099841
-
Intestinal microbiota variation in Senegalese sole (Solea senegalensis) under different feeding regimes
-
Martin-Antonio B, Manchado M, Infante C, Zerolo R, Labella A, Alonso C & Borrego JJ (2007) Intestinal microbiota variation in Senegalese sole (Solea senegalensis) under different feeding regimes. Aquac Res 38: 1213-1222.
-
(2007)
Aquac Res
, vol.38
, pp. 1213-1222
-
-
Martin-Antonio, B.1
Manchado, M.2
Infante, C.3
Zerolo, R.4
Labella, A.5
Alonso, C.6
Borrego, J.J.7
-
21
-
-
40349113425
-
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
-
McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z, Lozupone CA, Hamady M, Knight R & Bushman FD (2008) The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathog 4: e20.
-
(2008)
PLoS Pathog
, vol.4
-
-
McKenna, P.1
Hoffmann, C.2
Minkah, N.3
Aye, P.P.4
Lackner, A.5
Liu, Z.6
Lozupone, C.A.7
Hamady, M.8
Knight, R.9
Bushman, F.D.10
-
22
-
-
79953823191
-
Effect of dietary alginic acid on juvenile tilapia (Oreochromis niloticus) intestinal microbial balance, intestinal histology and growth performance
-
Merrifield DL, Harper GM, Mustafa S, Carnevali O, Picchietti S & Davies SJ (2011) Effect of dietary alginic acid on juvenile tilapia (Oreochromis niloticus) intestinal microbial balance, intestinal histology and growth performance. Cell Tissue Res 344: 135-146.
-
(2011)
Cell Tissue Res
, vol.344
, pp. 135-146
-
-
Merrifield, D.L.1
Harper, G.M.2
Mustafa, S.3
Carnevali, O.4
Picchietti, S.5
Davies, S.J.6
-
23
-
-
77956095453
-
Metagenomic sequencing of an in vitro-simulated microbial community
-
Morgan JL, Darling AE & Eisen JA (2010) Metagenomic sequencing of an in vitro-simulated microbial community. PLoS ONE 5: e10209.
-
(2010)
PLoS ONE
, vol.5
-
-
Morgan, J.L.1
Darling, A.E.2
Eisen, J.A.3
-
24
-
-
78650004251
-
Pyrosequence-based 16S rRNA profiling of gastro-intestinal microbiota
-
Nakayama J (2010) Pyrosequence-based 16S rRNA profiling of gastro-intestinal microbiota. Bioscience and Microflora 29: 83-96.
-
(2010)
Bioscience and Microflora
, vol.29
, pp. 83-96
-
-
Nakayama, J.1
-
25
-
-
79960904343
-
Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing
-
Nam YD, Jung MJ, Roh SW, Kim MS & Bae JW (2011) Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS ONE 6: e22109.
-
(2011)
PLoS ONE
, vol.6
-
-
Nam, Y.D.1
Jung, M.J.2
Roh, S.W.3
Kim, M.S.4
Bae, J.W.5
-
26
-
-
84876117081
-
Effects of OUT clustering and PCR artifacts on microbial diversity estimates
-
Patin NV, Kunin V, Lidström U & Ashby MN (2013) Effects of OUT clustering and PCR artifacts on microbial diversity estimates. Microb Ecol 65: 709-719.
-
(2013)
Microb Ecol
, vol.65
, pp. 709-719
-
-
Patin, N.V.1
Kunin, V.2
Lidström, U.3
Ashby, M.N.4
-
27
-
-
0242276223
-
Enzyme production by obligate intestinal anaerobic bacteria isolated from oscars (Astronotus ocellatus), angelfish (Pterophyllum scalare) and southern flounder (Paralichthys lethostigma)
-
Ramirez RF & Dixon BA (2003) Enzyme production by obligate intestinal anaerobic bacteria isolated from oscars (Astronotus ocellatus), angelfish (Pterophyllum scalare) and southern flounder (Paralichthys lethostigma). Aquacult 227: 417-426.
-
(2003)
Aquacult
, vol.227
, pp. 417-426
-
-
Ramirez, R.F.1
Dixon, B.A.2
-
28
-
-
85056036546
-
Influence of fecal sample storage on bacterial community diversity
-
Roesch LF, Casella G, Simell O, Krischer J, Wasserfall CH, Schatz D, Atkinson MA, Neu J & Triplett EW (2009) Influence of fecal sample storage on bacterial community diversity. Open Microbiol J 3: 40-46.
-
(2009)
Open Microbiol J
, vol.3
, pp. 40-46
-
-
Roesch, L.F.1
Casella, G.2
Simell, O.3
Krischer, J.4
Wasserfall, C.H.5
Schatz, D.6
Atkinson, M.A.7
Neu, J.8
Triplett, E.W.9
-
29
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
30
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D & Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE 6: e27310.
-
(2011)
PLoS ONE
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
31
-
-
80054111796
-
Influence of the diet on the microbial diversity of faecal and gastrointestinal contents in gilthead sea bream (Sparus aurata) and intestinal contents in goldfish (Carassius auratus)
-
Silva FC, Nicoli JR, Zambonino-Infante JL, Kaushik S & Gatesoupe FJ (2011) Influence of the diet on the microbial diversity of faecal and gastrointestinal contents in gilthead sea bream (Sparus aurata) and intestinal contents in goldfish (Carassius auratus). FEMS Microbiol Ecol 78: 285-296.
-
(2011)
FEMS Microbiol Ecol
, vol.78
, pp. 285-296
-
-
Silva, F.C.1
Nicoli, J.R.2
Zambonino-Infante, J.L.3
Kaushik, S.4
Gatesoupe, F.J.5
-
32
-
-
34247098019
-
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targeting bacterial community analysis
-
Sipos R, Szekely AJ, Palatinszky M, Revesz S, Marialigeti K & Nikolausz M (2007) Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targeting bacterial community analysis. FEMS Microbiol Ecol 60: 341-350.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 341-350
-
-
Sipos, R.1
Szekely, A.J.2
Palatinszky, M.3
Revesz, S.4
Marialigeti, K.5
Nikolausz, M.6
-
33
-
-
84862770956
-
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
-
Sullam KE, Essinger SD, Lozupone CA et al. (2012) Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis. Mol Ecol 21: 3363-3378.
-
(2012)
Mol Ecol
, vol.21
, pp. 3363-3378
-
-
Sullam, K.E.1
Essinger, S.D.2
Lozupone, C.A.3
-
34
-
-
48949115618
-
Lactobacillus spp. bacteria as probiotics in gilthead sea bream (Sparus aurata, L.) larvae: effects on growth performance and digestive enzyme activities
-
Suzer C, Çoban D, Kamaci HO, Saka Ş, Firat K, Otgucuoǧlu Ö & Küçüksari H (2008) Lactobacillus spp. bacteria as probiotics in gilthead sea bream (Sparus aurata, L.) larvae: effects on growth performance and digestive enzyme activities. Aquaculture 280: 140-145.
-
(2008)
Aquaculture
, vol.280
, pp. 140-145
-
-
Suzer, C.1
Çoban, D.2
Kamaci, H.O.3
Saka, S.4
Firat, K.5
Otgucuoǧlu, O.6
Küçüksari, H.7
-
35
-
-
80053267196
-
Transcriptomic responses to functional feeds in Atlantic salmon (Salmo salar)
-
Tacchi L, Bickerdike R, Douglas A, Secombes CJ & Martin SAM (2011) Transcriptomic responses to functional feeds in Atlantic salmon (Salmo salar). Fish Shellfish Immunol 31: 704-715.
-
(2011)
Fish Shellfish Immunol
, vol.31
, pp. 704-715
-
-
Tacchi, L.1
Bickerdike, R.2
Douglas, A.3
Secombes, C.J.4
Martin, S.A.M.5
-
36
-
-
77956878538
-
Intestinal microbiota diversity of the flat fish Solea senegalensis (Kaup, 1858) following probiotic administration
-
Tapia-Paniagua S, Chabrillón M, Díaz-Rosales P, Banda I, Lobo C, Balebona MC & Moriñigo M (2010) Intestinal microbiota diversity of the flat fish Solea senegalensis (Kaup, 1858) following probiotic administration. Microb Ecol 60: 310-319.
-
(2010)
Microb Ecol
, vol.60
, pp. 310-319
-
-
Tapia-Paniagua, S.1
Chabrillón, M.2
Díaz-Rosales, P.3
Banda, I.4
Lobo, C.5
Balebona, M.C.6
Moriñigo, M.7
-
37
-
-
84895073625
-
-
Microbial diversity in the hindgut of the fish Kyphosus cinerascens. PhD thesis. Department of Biology, Hartwick College, Oneonta, NY.
-
Troy G (2010) Microbial diversity in the hindgut of the fish Kyphosus cinerascens. PhD thesis. Department of Biology, Hartwick College, Oneonta, NY.
-
(2010)
-
-
Troy, G.1
-
38
-
-
47749125768
-
Time-related action of Lactobacillus plantarum in the bacterial microbiota of shrimp digestive tract and its action as immunostimulant
-
Vieira F, Buglione Neto CC, Mouriño JLP et al. (2008) Time-related action of Lactobacillus plantarum in the bacterial microbiota of shrimp digestive tract and its action as immunostimulant. Pesquisa Agropecuária Brasileira 43: 763-769.
-
(2008)
Pesquisa Agropecuária Brasileira
, vol.43
, pp. 763-769
-
-
Vieira, F.1
Buglione Neto, C.C.2
Mouriño, J.L.P.3
-
39
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM & Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
40
-
-
42749095600
-
Effect of probiotics, Enteroccus faecium, on tilapia (Oreochromis niloticus) growth performance and immune response
-
Wang Y-B, Tian Z-Q, Yao J-T & W-f L (2008) Effect of probiotics, Enteroccus faecium, on tilapia (Oreochromis niloticus) growth performance and immune response. Aquaculture 277: 203-207.
-
(2008)
Aquaculture
, vol.277
, pp. 203-207
-
-
Wang, Y.-B.1
Tian, Z.-Q.2
Yao, J.-T.3
W-f, L.4
-
41
-
-
77951256096
-
Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)
-
Wu S, Gao T, Zheng Y, Wang W, Cheng Y & Wang G (2010) Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco). Aquaculture (Amsterdam, Netherlands) 303: 1-7.
-
(2010)
Aquaculture (Amsterdam, Netherlands)
, vol.303
, pp. 1-7
-
-
Wu, S.1
Gao, T.2
Zheng, Y.3
Wang, W.4
Cheng, Y.5
Wang, G.6
-
42
-
-
84862828928
-
Characterization of bacterial community in the stomach of yellow catfish (Pelteobagrus fulvidraco)
-
Wu S, Tian J, Wang G, Li W & Zou H (2012a) Characterization of bacterial community in the stomach of yellow catfish (Pelteobagrus fulvidraco). World J Microbiol Biotechnol 28: 2165-2174.
-
(2012)
World J Microbiol Biotechnol
, vol.28
, pp. 2165-2174
-
-
Wu, S.1
Tian, J.2
Wang, G.3
Li, W.4
Zou, H.5
-
43
-
-
84857429885
-
Composition, diversity, and origin of the bacterial community in grass carp intestine
-
Wu S, Wang G, Angert ER, Wang W, Li W & Zou H (2012b) Composition, diversity, and origin of the bacterial community in grass carp intestine. PLoS ONE 7: e30440.
-
(2012)
PLoS ONE
, vol.7
-
-
Wu, S.1
Wang, G.2
Angert, E.R.3
Wang, W.4
Li, W.5
Zou, H.6
-
44
-
-
84863230358
-
PCR-DGGE analysis of the autochthonous gut microbiota of grouper Epinephelus coioides following probiotic Bacillus clausii administration
-
Yang H-L, Sun Y-Z, Ma R-L & Ye J-D (2012) PCR-DGGE analysis of the autochthonous gut microbiota of grouper Epinephelus coioides following probiotic Bacillus clausii administration. Aquac Res 43: 489-497.
-
(2012)
Aquac Res
, vol.43
, pp. 489-497
-
-
Yang, H.-L.1
Sun, Y.-Z.2
Ma, R.-L.3
Ye, J.-D.4
|