-
1
-
-
84875077775
-
Macroecological patterns of marine bacteria on a global scale
-
Amend AS, Oliver TA, Amaral-Zettler LA, et al,. (2013) Macroecological patterns of marine bacteria on a global scale. Journal of Biogeography, 40, 800-811.
-
(2013)
Journal of Biogeography
, vol.40
, pp. 800-811
-
-
Amend, A.S.1
Oliver, T.A.2
Amaral-Zettler, L.A.3
-
2
-
-
78650061319
-
Navigating the multiple meanings of beta diversity: A roadmap for the practicing ecologist
-
Anderson MJ, Crist TO, Chase JM, et al,. (2011) Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist. Ecology Letters, 14, 19-28.
-
(2011)
Ecology Letters
, vol.14
, pp. 19-28
-
-
Anderson, M.J.1
Crist, T.O.2
Chase, J.M.3
-
4
-
-
84856769172
-
Distance decay of similarity in freshwater communities: Do macro- and microorganisms follow the same rules?
-
Astorga A, Oksanen J, Luoto M, et al,. (2012) Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules? Global Ecology and Biogeography, 21, 365-375.
-
(2012)
Global Ecology and Biogeography
, vol.21
, pp. 365-375
-
-
Astorga, A.1
Oksanen, J.2
Luoto, M.3
-
5
-
-
40749115191
-
Habitat heterogeneity overrides the species-area relationship
-
Baldi A, (2008) Habitat heterogeneity overrides the species-area relationship. Journal of Biogeography, 35, 675-681.
-
(2008)
Journal of Biogeography
, vol.35
, pp. 675-681
-
-
Baldi, A.1
-
6
-
-
77958492668
-
Experimental tests of the bacterial distance-decay relationship
-
Bell T, (2010) Experimental tests of the bacterial distance-decay relationship. ISME Journal, 4, 1357-1365.
-
(2010)
ISME Journal
, vol.4
, pp. 1357-1365
-
-
Bell, T.1
-
7
-
-
22544432221
-
Larger islands house more bacterial taxa
-
Bell T, Ager D, Song JI, et al,. (2005) Larger islands house more bacterial taxa. Science, 308, 1884.
-
(2005)
Science
, vol.308
, pp. 1884
-
-
Bell, T.1
Ager, D.2
Song, J.I.3
-
8
-
-
70349915892
-
Testing the performance of beta diversity measures based on incidence data: The robustness to undersampling
-
Cardoso P, Borges PAV, Veech JA, (2009) Testing the performance of beta diversity measures based on incidence data: the robustness to undersampling. Diversity and Distributions, 15, 1081-1090.
-
(2009)
Diversity and Distributions
, vol.15
, pp. 1081-1090
-
-
Cardoso, P.1
Borges, P.A.V.2
Veech, J.A.3
-
9
-
-
55249124606
-
The origins of ecological diversity in prokaryotes
-
Cohan FM, Koeppel AF, (2008) The origins of ecological diversity in prokaryotes. Current Biology, 18, R1024-R1034.
-
(2008)
Current Biology
, vol.18
-
-
Cohan, F.M.1
Koeppel, A.F.2
-
10
-
-
84859574767
-
Bioinformatic challenges for DNA metabarcoding of plants and animals
-
Coissac E, Riaz T, Puillandre N, (2012) Bioinformatic challenges for DNA metabarcoding of plants and animals. Molecular Ecology, 21, 1834-1847.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1834-1847
-
-
Coissac, E.1
Riaz, T.2
Puillandre, N.3
-
11
-
-
0000889660
-
Statistics and biology of the species-area relationship
-
Connor EF, McCoy ED, (1979) Statistics and biology of the species-area relationship. The American Naturalist, 113, 791-833.
-
(1979)
The American Naturalist
, vol.113
, pp. 791-833
-
-
Connor, E.F.1
McCoy, E.D.2
-
12
-
-
23944487811
-
Exploring microbial diversity - A vast below
-
Curtis TP, Sloan WT, (2005) Exploring microbial diversity-a vast below. Science, 309, 1331-1333.
-
(2005)
Science
, vol.309
, pp. 1331-1333
-
-
Curtis, T.P.1
Sloan, W.T.2
-
13
-
-
62149134492
-
Which function describes the species-area relationship best? A review and empirical evaluation
-
Dengler J, (2009) Which function describes the species-area relationship best? A review and empirical evaluation. Journal of Biogeography, 36, 728-744.
-
(2009)
Journal of Biogeography
, vol.36
, pp. 728-744
-
-
Dengler, J.1
-
14
-
-
79951480123
-
-
R Foundation for Statistical Computing, Vienna. Development Core Team R
-
Development Core Team R, (2010) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
15
-
-
84856055612
-
Repeated sampling reveals differential variability in measures of species richness and community composition in planktonic protists
-
Dolan JR, Stoeck T, (2011) Repeated sampling reveals differential variability in measures of species richness and community composition in planktonic protists. Environmental Microbiology Reports, 3, 661-666.
-
(2011)
Environmental Microbiology Reports
, vol.3
, pp. 661-666
-
-
Dolan, J.R.1
Stoeck, T.2
-
16
-
-
33644935692
-
The imprint of the geographical, evolutionary and ecological context on species-area relationships
-
Drakare S, Lennon JJ, Hillebrand H, (2006) The imprint of the geographical, evolutionary and ecological context on species-area relationships. Ecology Letters, 9, 215-227.
-
(2006)
Ecology Letters
, vol.9
, pp. 215-227
-
-
Drakare, S.1
Lennon, J.J.2
Hillebrand, H.3
-
17
-
-
0037052531
-
Global dispersal of free-living microbial eukaryote species
-
Finlay BJ, (2002) Global dispersal of free-living microbial eukaryote species. Science, 296, 1061-1063.
-
(2002)
Science
, vol.296
, pp. 1061-1063
-
-
Finlay, B.J.1
-
18
-
-
77956096764
-
Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets
-
Gobet A, Quince C, Ramette A, (2010) Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets. Nucleic Acids Research, 38, e155.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Gobet, A.1
Quince, C.2
Ramette, A.3
-
19
-
-
84857121817
-
Diversity and dynamics of rare and of resident bacterial populations in coastal sands
-
Gobet A, Boeer SI, Huse SM, et al,. (2012) Diversity and dynamics of rare and of resident bacterial populations in coastal sands. Isme Journal, 6, 542-553.
-
(2012)
Isme Journal
, vol.6
, pp. 542-553
-
-
Gobet, A.1
Boeer, S.I.2
Huse, S.M.3
-
20
-
-
0031472111
-
On the implications of species-area relationships for endemism, spatial turnover, and food web patterns
-
Harte J, Kinzig AP, (1997) On the implications of species-area relationships for endemism, spatial turnover, and food web patterns. Oikos, 80, 417-427.
-
(1997)
Oikos
, vol.80
, pp. 417-427
-
-
Harte, J.1
Kinzig, A.P.2
-
21
-
-
0032990938
-
Estimating species-area relationships from plot to landscape scale using species spatial-turnover data
-
Harte J, McCarthy S, Taylor K, Kinzig A, Fischer ML, (1999) Estimating species-area relationships from plot to landscape scale using species spatial-turnover data. Oikos, 86, 45-54.
-
(1999)
Oikos
, vol.86
, pp. 45-54
-
-
Harte, J.1
McCarthy, S.2
Taylor, K.3
Kinzig, A.4
Fischer, M.L.5
-
22
-
-
0035026806
-
Differences in species richness patterns between unicellular and multicellular organisms
-
Hillebrand H, Watermann F, Karez R, Berninger UG, (2001) Differences in species richness patterns between unicellular and multicellular organisms. Oecologia, 126, 114-124.
-
(2001)
Oecologia
, vol.126
, pp. 114-124
-
-
Hillebrand, H.1
Watermann, F.2
Karez, R.3
Berninger, U.G.4
-
23
-
-
10644246730
-
A taxa-area relationship for bacteria
-
Horner-Devine M, Lage M, Hughes J, Bohannan B, (2004) A taxa-area relationship for bacteria. Nature, 432, 750-753.
-
(2004)
Nature
, vol.432
, pp. 750-753
-
-
Horner-Devine, M.1
Lage, M.2
Hughes, J.3
Bohannan, B.4
-
25
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML, (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental Microbiology, 12, 1889-1898.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
26
-
-
40449089344
-
Estimating landscape-scale species richness: Reconciling frequency- and turnover-based approaches
-
Jobe RT, (2008) Estimating landscape-scale species richness: Reconciling frequency- and turnover-based approaches. Ecology, 89, 174-182.
-
(2008)
Ecology
, vol.89
, pp. 174-182
-
-
Jobe, R.T.1
-
27
-
-
73349110099
-
Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P, (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology, 12, 118-123.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
29
-
-
84860852433
-
Which sequencing depth is sufficient to describe patterns in bacterial alpha- and beta-diversity?
-
Lundin D, Severin I, Logue JB, et al,. (2012) Which sequencing depth is sufficient to describe patterns in bacterial alpha- and beta-diversity? Environmental Microbiology Reports, 4, 367-372.
-
(2012)
Environmental Microbiology Reports
, vol.4
, pp. 367-372
-
-
Lundin, D.1
Severin, I.2
Logue, J.B.3
-
31
-
-
79956366900
-
Drivers of bacterial beta-diversity depend on spatial scale
-
Martiny JBH, Eisen JA, Penn K, Allison SD, Horner-Devine MC, (2011) Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences, USA, 108, 7850-7854.
-
(2011)
Proceedings of the National Academy of Sciences, USA
, vol.108
, pp. 7850-7854
-
-
Martiny, J.B.H.1
Eisen, J.A.2
Penn, K.3
Allison, S.D.4
Horner-Devine, M.C.5
-
32
-
-
84860257064
-
Scale dependence in species turnover reflects variance in species occupancy
-
McGlinn DJ, Hurlbert AH, (2012) Scale dependence in species turnover reflects variance in species occupancy. Ecology, 93, 294-302.
-
(2012)
Ecology
, vol.93
, pp. 294-302
-
-
McGlinn, D.J.1
Hurlbert, A.H.2
-
33
-
-
49249106204
-
A general framework for the distance-decay of similarity in ecological communities
-
Morlon H, Chuyong G, Condit R, et al,. (2008) A general framework for the distance-decay of similarity in ecological communities. Ecology Letters, 11, 904-917.
-
(2008)
Ecology Letters
, vol.11
, pp. 904-917
-
-
Morlon, H.1
Chuyong, G.2
Condit, R.3
-
34
-
-
0033404204
-
The distance decay of similarity in biogeography and ecology
-
Nekola JC, White PS, (1999) The distance decay of similarity in biogeography and ecology. Journal of Biogeography, 26, 867-878.
-
(1999)
Journal of Biogeography
, vol.26
, pp. 867-878
-
-
Nekola, J.C.1
White, P.S.2
-
36
-
-
34247221045
-
Essay - The role of ecological theory in microbial ecology
-
Prosser JI, Bohannan BJ, Curtis TP, et al,. (2007) Essay-the role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5, 384-392.
-
(2007)
Nature Reviews Microbiology
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.2
Curtis, T.P.3
-
37
-
-
53849104257
-
The rational exploration of microbial diversity
-
Quince C, Curtis TP, Sloan WT, (2008) The rational exploration of microbial diversity. ISME Journal, 2, 997-1006.
-
(2008)
ISME Journal
, vol.2
, pp. 997-1006
-
-
Quince, C.1
Curtis, T.P.2
Sloan, W.T.3
-
38
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzen A, Davenport R, Turnbaugh P, (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, 12, 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.3
Turnbaugh, P.4
-
39
-
-
84874595779
-
Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity
-
Ranjard L, Dequiedt S, Chemidlin Prévost-Bouré N, et al,. (2013) Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity. Nature Communications, 4, 1434.
-
(2013)
Nature Communications
, vol.4
, pp. 1434
-
-
Ranjard, L.1
Dequiedt, S.2
Chemidlin Prévost-Bouré, N.3
-
40
-
-
21744441220
-
Does ecosystem size determine aquatic bacterial richness?
-
Reche I, Pulido-Villena E, Morales-Baquero R, Casamayor EO, (2005) Does ecosystem size determine aquatic bacterial richness? Ecology, 86, 1715-1722.
-
(2005)
Ecology
, vol.86
, pp. 1715-1722
-
-
Reche, I.1
Pulido-Villena, E.2
Morales-Baquero, R.3
Casamayor, E.O.4
-
42
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL, (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One, 6, e27310.
-
(2011)
PLoS One
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
43
-
-
48749125472
-
It's all relative: Ranking the diversity of aquatic bacterial communities
-
Shaw A, Halpern A, Beeson K, et al,. (2008) It's all relative: ranking the diversity of aquatic bacterial communities. Environmental Microbiology, 10, 2200-2210.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 2200-2210
-
-
Shaw, A.1
Halpern, A.2
Beeson, K.3
-
44
-
-
0742285066
-
Power-law species-area relationships and self-similar species distributions within finite areas
-
Sizling AL, Storch D, (2004) Power-law species-area relationships and self-similar species distributions within finite areas. Ecology Letters, 7, 60-68.
-
(2004)
Ecology Letters
, vol.7
, pp. 60-68
-
-
Sizling, A.L.1
Storch, D.2
-
45
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin M, Morrison H, Huber J, et al,. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proceedings of the National Academy of Sciences, USA, 103, 12115-12120.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.1
Morrison, H.2
Huber, J.3
-
46
-
-
33847233325
-
The distance decay of similarity in ecological communities
-
Soininen J, McDonald R, Hillebrand H, (2007) The distance decay of similarity in ecological communities. Ecography, 30, 3-12.
-
(2007)
Ecography
, vol.30
, pp. 3-12
-
-
Soininen, J.1
McDonald, R.2
Hillebrand, H.3
-
47
-
-
84870246512
-
Current measures for distance decay in similarity of species composition are influenced by study extent and grain size
-
Steinbauer MJ, Dolos K, Reineking B, Beierkuhnlein C, (2012) Current measures for distance decay in similarity of species composition are influenced by study extent and grain size. Global Ecology and Biogeography, 21, 1203-1212.
-
(2012)
Global Ecology and Biogeography
, vol.21
, pp. 1203-1212
-
-
Steinbauer, M.J.1
Dolos, K.2
Reineking, B.3
Beierkuhnlein, C.4
-
48
-
-
58849135478
-
Scaling species richness and distribution: Uniting the species-area and species-energy relationships
-
(eds Storch D. Marquet P. Brown J.), Cambridge University Press, Cambridge.
-
Storch D, Šizling AL, Gaston KJ, (2007) Scaling species richness and distribution: uniting the species-area and species-energy relationships. In: Scaling Biodiversity (eds, Storch D, Marquet P, Brown J,), pp. 300-321. Cambridge University Press, Cambridge.
-
(2007)
Scaling Biodiversity
, pp. 300-321
-
-
Storch, D.1
Šizling, A.L.2
Gaston, K.J.3
-
49
-
-
84864433586
-
Universal species-area and endemics-area relationships at continental scales
-
Storch D, Keil P, Jetz W, (2012) Universal species-area and endemics-area relationships at continental scales. Nature, 488, 78-81.
-
(2012)
Nature
, vol.488
, pp. 78-81
-
-
Storch, D.1
Keil, P.2
Jetz, W.3
-
50
-
-
84873437771
-
Marine bacteria exhibit a bipolar distribution
-
Sul WJ, Oliver TA, Ducklow HW, Amaral-Zettler LA, Sogin ML, (2013) Marine bacteria exhibit a bipolar distribution. Proceedings of the National Academy of Sciences, USA, 110, 2342-2347.
-
(2013)
Proceedings of the National Academy of Sciences, USA
, vol.110
, pp. 2342-2347
-
-
Sul, W.J.1
Oliver, T.A.2
Ducklow, H.W.3
Amaral-Zettler, L.A.4
Sogin, M.L.5
-
51
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E, (2012) Towards next-generation biodiversity assessment using DNA metabarcoding. Molecular Ecology, 21, 2045-2050.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
52
-
-
77953953850
-
A diversity of beta diversities: Straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity
-
Tuomisto H, (2010) A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity. Ecography, 33, 2-22.
-
(2010)
Ecography
, vol.33
, pp. 2-22
-
-
Tuomisto, H.1
-
53
-
-
28644449895
-
Scale-dependence in species-area relationships
-
Turner WR, Tjorve E, (2005) Scale-dependence in species-area relationships. Ecography, 28, 721-730.
-
(2005)
Ecography
, vol.28
, pp. 721-730
-
-
Turner, W.R.1
Tjorve, E.2
-
54
-
-
84880919285
-
Phylogenetic beta diversity in bacterial assemblages across ecosystems: Deterministic versus stochastic processes
-
Wang J, Shen J, Wu Y, et al,. (2013) Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes. Isme Journal, 7, 1310-1321.
-
(2013)
Isme Journal
, vol.7
, pp. 1310-1321
-
-
Wang, J.1
Shen, J.2
Wu, Y.3
-
55
-
-
33745070555
-
Taxa-area relationships for microbes: The unsampled and the unseen
-
Woodcock S, Curtis TP, Head IM, Lunn M, Sloan WT, (2006) Taxa-area relationships for microbes: the unsampled and the unseen. Ecology Letters, 9, 805-812.
-
(2006)
Ecology Letters
, vol.9
, pp. 805-812
-
-
Woodcock, S.1
Curtis, T.P.2
Head, I.M.3
Lunn, M.4
Sloan, W.T.5
-
56
-
-
77957881743
-
Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): The role of the rare biosphere
-
Youssef N, Couger M, Elshahed M, (2010) Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): the role of the rare biosphere. PLoS One, 5, e12414.
-
(2010)
PLoS One
, vol.5
-
-
Youssef, N.1
Couger, M.2
Elshahed, M.3
-
57
-
-
80052540333
-
Global patterns of bacterial Beta-diversity in seafloor and seawater ecosystems
-
Zinger L, Amaral-Zettler LA, Fuhrman JA, et al,. (2011) Global patterns of bacterial Beta-diversity in seafloor and seawater ecosystems. PLoS One, 6, e24570.
-
(2011)
PLoS One
, vol.6
-
-
Zinger, L.1
Amaral-Zettler, L.A.2
Fuhrman, J.A.3
-
58
-
-
84859605159
-
Two decades of describing the unseen majority of aquatic microbial diversity
-
Zinger L, Gobet A, Pommier T, (2012) Two decades of describing the unseen majority of aquatic microbial diversity. Molecular Ecology, 21, 1878-1896.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1878-1896
-
-
Zinger, L.1
Gobet, A.2
Pommier, T.3
|