Characterization of the Z lineage Major histocompatability complex class i genes in zebrafish

Immunogenetics

Volumn 66, Issue 3, 2014, Pages 185-198

  Dirscherl, Hayley ^a   Yoder, Jeffrey A ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Evolution; Haplotype; MHC class I; Polymorphism; Teleost

Indexed keywords

ALLELES; AMINO ACID SEQUENCE; ANIMALS; CHROMOSOME MAPPING; DNA, COMPLEMENTARY; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE ORDER; GENES, MHC CLASS I; GENETIC LINKAGE; GENETIC LOCI; HAPLOTYPES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ALIGNMENT; TRANSCRIPTION, GENETIC; UBIQUITINATION; ZEBRAFISH;

EID: 84894563753     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-013-0748-z     Document Type: Article

References (26)

1. Barclay AN (1997) The leucocyte antigen factsbook. Academic, San Diego
2. Chakrabarti S, Streisinger G, Singer F, Walker C (1983) Frequency of gamma-ray induced specific locus and recessive lethal mutations in mature germ cells of the zebrafish, Brachydanio rerio. Genetics 103:109-123
3. Chang MX, Wang YP, Nie P (2009) Zebrafish peptidoglycan recognition protein SC (zfPGRP-SC) mediates multiple intracellular signaling pathways. Fish Shellfish Immunol 26:264-274
4. de Jong JL, Zon LI (2012) Histocompatibility and hematopoietic transplantation in the zebrafish. Adv Hematol 2012:282318
5. de Jong JL, Burns CE, Chen AT, Pugach E, Mayhall EA, Smith AC, Feldman HA, Zhou Y, Zon LI (2011) Characterization of immune-matched hematopoietic transplantation in zebrafish. Blood 117:4234-4242
6. Dijkstra JM, Katagiri T, Hosomichi K, Yanagiya K, Inoko H, Ototake M, Aoki T, Hashimoto K, Shiina T (2007) A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes. Immunogenetics 59:305-321
7. Dixon B, Stet RJ (2001) The relationship between major histocompatibility receptors and innate immunity in teleost fish. Dev Comp Immunol 25:683-699
8. Green MR, Sambrook J (2012) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
9. Hashimoto K, Nakanishi T, Kurosawa Y (1990) Isolation of carp genes encoding major histocompatibility complex antigens. Proc Natl Acad Sci U S A 87:6863-6867
10. Klein J, Bontrop RE, Dawkins RL, Erlich HA, Gyllensten UB, Heise ER, Jones PP, Parham P, Wakeland EK, Watkins DI (1990) Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics 31:217-219
11. Kruiswijk CP, Hermsen TT, Westphal AH, Savelkoul HF, Stet RJ (2002) A novel functional class I lineage in zebrafish (Danio rerio), carp (Cyprinus carpio), and large barbus (Barbus intermedius) showing an unusual conservation of the peptide binding domains. J Immunol 169:1936-1947
12. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948
13. Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 40:D302-D305
14. Lukacs MF, Harstad H, Bakke HG, Beetz-Sargent M, McKinnel L, Lubieniecki KP, Koop BF, Grimholt U (2010) Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon. BMC Genomics 11:154
15. Michalova V, Murray BW, Sultmann H, Klein J (2000) A contig map of the Mhc class I genomic region in the zebrafish reveals ancient synteny. J Immunol 164:5296-5305
16. Mizgirev IV, Revskoy S (2010) A new zebrafish model for experimental leukemia therapy. Cancer Biol Ther 9:895-902
17. Mohseny AB, Xiao W, Carvalho R, Spaink HP, Hogendoorn PC, Cleton-Jansen AM (2012) An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. J Pathol 227:245-253
18. Nonaka MI, Aizawa K, Mitani H, Bannai HP, Nonaka M (2011) Retained orthologous relationships of the MHC Class I genes during euteleost evolution. Mol Biol Evol 28:3099-3112
19. Okamura K, Nakanishi T, Kurosawa Y, Hashimoto K (1993) Expansion of genes that encode MHC class I molecules in cyprinid fishes. J Immunol 151:188-200
20. Sambrook JG, Figueroa F, Beck S (2005) A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. BMC Genomics 6:152
21. Srisapoome P, Ohira T, Hirono I, Aoki T (2004) Genes of the constant regions of functional immunoglobulin heavy chain of Japanese flounder, Paralichthys olivaceus. Immunogenetics 56:292-300
22. Stet RJ, Kruiswijk CP, Dixon B (2003) Major histocompatibility lineages and immune gene function in teleost fishes: the road not taken. Crit Rev Immunol 23:441-471
23. Takeuchi H, Figueroa F, O'hUigin C, Klein J (1995) Cloning and characterization of class I Mhc genes of the zebrafish, Brachydanio rerio. Immunogenetics 42:77-84
24. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599
25. Wong RY, Perrin F, Oxendine SE, Kezios ZD, Sawyer S, Zhou L, Dereje S, Godwin J (2012) Comparing behavioral responses across multiple assays of stress and anxiety in zebrafish (Danio rerio). Behaviour 149:1205-1240
26. Yang D, Liu Q, Yang M, Wu H, Wang Q, Xiao J, Zhang Y (2012) RNA-seq liver transcriptome analysis reveals an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish. BMC Genomics 13:319