DIVE: A data intensive visualization engine

Bioinformatics

Volumn 30, Issue 4, 2014, Pages 593-595

  Bromley, Dennis ^a   Rysavy, Steven J ^a   Su, Robert ^b   Toofanny, Rudesh D ^b   Schmidlin, Tom ^b   Daggett, Valerie ^a,b  

^a UNIVERSITY OF WASHINGTON   (United States)

^b University of Washington   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COPPER ZINC SUPEROXIDE DISMUTASE; MUTANT PROTEIN; PROTEIN P53; SUPEROXIDE DISMUTASE; TP53 PROTEIN, HUMAN;

ARTICLE; BIOLOGY; COMPUTER GRAPHICS; COMPUTER PROGRAM; COMPUTER SIMULATION; DOCUMENTATION; GENETICS; HUMAN; METABOLISM; METHODOLOGY; MUTATION;

COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; COMPUTER SIMULATION; DOCUMENTATION; HUMANS; MUTANT PROTEINS; MUTATION; SOFTWARE; SUPEROXIDE DISMUTASE; TUMOR SUPPRESSOR PROTEIN P53;

EID: 84894517919     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt721     Document Type: Article

References (12)

1. Ashburner, M. et al. (2000) Gene ontology: tool for unification of biology. Nat. Genet., 25, 25-29.
2. Bernstein, F.C. et al. (1977) The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol., 112, 535-542.
3. Boeckler, F.M. et al. (2008) Targeted rescue of a destabilized mutant of p53 by an in silico screened drug. Proc. Natl Acad. Sci. USA, 105, 10360-10365.
4. Bromley, D. et al. (2013) Structural consequences of mutations to the-tocopherol transfer protein associated with the neurodegenerative disease ataxia with vitamin E deficiency. Biochemistry, 52, 4264-4273.
5. Joerger, A.C. et al. (2006) Structural basis for understanding oncogenic P53 mutations and designing rescue drugs. Proc. Natl Acad. Sci. USA, 103, 15056-15061.
6. Rakhit, R. and Chakrabartty, A. (2006) Structure, folding, and misfolding of Cu, Zn superoxide dismutase in amyotrophic lateral sclerosis. Biochem. Biophys. Acta, 1762, 1025-1037.
7. Rysavy, S., J., Bromley and Daggett, V. (2014) DIVE: A graph-based visual analytics framework for big data. IEEE Computer Graphics and Applications, accepted for publication.
8. Schmidlin, T. et al. (2009) Structural changes to monomeric CuZn superoxide dismutase caused by the familial amyotrophic lateral sclerosis-associated mutation A4V. Biophys. J., 97, 1709-1718.
9. Schroeder, W. et al. (1996) The Visualization Toolkit: An Object-Oriented Approach to 3-D Graphics. Prentice Hall, Upper Saddle River, NJ.
10. Shannon, P. et al. (2003) Cytoscape: a SOFTWARE environment for integrated models of Biomolecular interaction networks. Genome Res., 13, 2498-2504.
11. Simms, A.M. and Daggett, V. (2012) Protein simulation data in the relational model. J. Supercomp., 62, 150-173.
12. Van der Kamp, M.W. et al. (2010) Dynameomics: a comprehensive database of protein dynamics. Structure, 18, 423-435.