-
1
-
-
33744814106
-
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients
-
Smith EE, Buckley DG, Wu Z, Saenphimmachak C, Hoffman LR, et al. (2006) Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proc Natl Acad Sci U S A 103: 8487-8492.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 8487-8492
-
-
Smith, E.E.1
Buckley, D.G.2
Wu, Z.3
Saenphimmachak, C.4
Hoffman, L.R.5
-
2
-
-
33845648557
-
Bacterial contingency loci: The role of simple sequence DNA repeats in bacterial adaptation
-
Moxon R, Bayliss C, Hood D (2006) Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu Rev Genet 40: 307-333.
-
(2006)
Annu Rev Genet
, vol.40
, pp. 307-333
-
-
Moxon, R.1
Bayliss, C.2
Hood, D.3
-
4
-
-
33645763269
-
DNA sequences shaped by selection for stability
-
Ackermann M, Chao L (2006) DNA sequences shaped by selection for stability. PLoS Genet 2: e22.
-
(2006)
PLoS Genet
, vol.2
-
-
Ackermann, M.1
Chao, L.2
-
5
-
-
34347209094
-
Simple sequence repeats in prokaryotic genomes
-
Mrázek J, Guo X, Shah A (2007) Simple sequence repeats in prokaryotic genomes. Proc Natl Acad Sci U S A 104: 8472-8477.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8472-8477
-
-
Mrázek, J.1
Guo, X.2
Shah, A.3
-
6
-
-
0034685940
-
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection
-
Oliver A, Cantón R, Campo P, Baquero F, Blázquez J (2000) High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 288: 1251-1254.
-
(2000)
Science
, vol.288
, pp. 1251-1254
-
-
Oliver, A.1
Cantón, R.2
Campo, P.3
Baquero, F.4
Blázquez, J.5
-
7
-
-
34247342240
-
MutS deficiency and activity of the error-prone DNA polymerase IV are crucial for determining mucA as the main target for mucoid conversion in Pseudomonas aeruginosa
-
Moyano AJ, Luján AM, Argaraña CE, Smania AM (2007) MutS deficiency and activity of the error-prone DNA polymerase IV are crucial for determining mucA as the main target for mucoid conversion in Pseudomonas aeruginosa. Mol Microbiol 64: 547-559.
-
(2007)
Mol Microbiol
, vol.64
, pp. 547-559
-
-
Moyano, A.J.1
Luján, A.M.2
Argaraña, C.E.3
Smania, A.M.4
-
8
-
-
77949515264
-
Simple sequence repeats and mucoid conversion: Biased mucA mutagenesis in mismatch repair-deficient Pseudomonas aeruginosa
-
Moyano AJ, Smania AM (2009) Simple sequence repeats and mucoid conversion: biased mucA mutagenesis in mismatch repair-deficient Pseudomonas aeruginosa. PLoS One 4: e8203.
-
(2009)
PLoS One
, vol.4
-
-
Moyano, A.J.1
Smania, A.M.2
-
9
-
-
57349088170
-
Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation
-
Mena A, Smith EE, Burns JL, Speert DP, Moskowitz SM, et al. (2008) Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutation. J Bacteriol 190: 7910-7917.
-
(2008)
J Bacteriol
, vol.190
, pp. 7910-7917
-
-
Mena, A.1
Smith, E.E.2
Burns, J.L.3
Speert, D.P.4
Moskowitz, S.M.5
-
10
-
-
33745597862
-
Analysis of distribution indicates diverse functions of simple sequence repeats in Mycoplasma genomes
-
Mrázek J (2006) Analysis of distribution indicates diverse functions of simple sequence repeats in Mycoplasma genomes. Mol Biol Evol 23: 1370-1385.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1370-1385
-
-
Mrázek, J.1
-
11
-
-
45749085292
-
Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice
-
Wanner RM, Guthlein C, Springer B, Bottger EC, Ackermann M (2008) Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice. BMC Genomics 9: 249.
-
(2008)
BMC Genomics
, vol.9
, pp. 249
-
-
Wanner, R.M.1
Guthlein, C.2
Springer, B.3
Bottger, E.C.4
Ackermann, M.5
-
12
-
-
0035283333
-
Fidelity of replication of repetitive DNA in mutS and repair proficient Escherichia coli
-
Levy DD, Cebula TA (2001) Fidelity of replication of repetitive DNA in mutS and repair proficient Escherichia coli. Mutat Res 474: 1-14.
-
(2001)
Mutat Res
, vol.474
, pp. 1-14
-
-
Levy, D.D.1
Cebula, T.A.2
-
13
-
-
77958595499
-
Mucoidy, quorum sensing, mismatch repair and antibiotic resistance in Pseudomonas aeruginosa from cystic fibrosis chronic airways infections
-
Feliziani S, Luján AM, Moyano AJ, Sola C, Bocco JL, et al. (2010) Mucoidy, quorum sensing, mismatch repair and antibiotic resistance in Pseudomonas aeruginosa from cystic fibrosis chronic airways infections. PLoS One 5: e12669.
-
(2010)
PLoS One
, vol.5
-
-
Feliziani, S.1
Luján, A.M.2
Moyano, A.J.3
Sola, C.4
Bocco, J.L.5
-
14
-
-
0030931824
-
Mucoid Pseudomonas aeruginosa in cystic fibrosis: Characterization of muc mutations in clinical isolates and analysis of clearance in a mouse model of respiratory infection
-
Boucher JC, Yu H, Mudd MH, Deretic V (1997) Mucoid Pseudomonas aeruginosa in cystic fibrosis: characterization of muc mutations in clinical isolates and analysis of clearance in a mouse model of respiratory infection. Infect Immun 65: 3838-3846.
-
(1997)
Infect Immun
, vol.65
, pp. 3838-3846
-
-
Boucher, J.C.1
Yu, H.2
Mudd, M.H.3
Deretic, V.4
-
15
-
-
33750962335
-
Sequence diversity of the mucABD locus in Pseudomonas aeruginosa isolates from patients with cystic fibrosis
-
Bragonzi A, Wiehlmann L, Klockgether J, Cramer N, Worlitzsch D, et al. (2006) Sequence diversity of the mucABD locus in Pseudomonas aeruginosa isolates from patients with cystic fibrosis. Microbiology 152: 3261-3269.
-
(2006)
Microbiology
, vol.152
, pp. 3261-3269
-
-
Bragonzi, A.1
Wiehlmann, L.2
Klockgether, J.3
Cramer, N.4
Worlitzsch, D.5
-
16
-
-
38849136576
-
Investigation of the algT operon sequence in mucoid and non-mucoid Pseudomonas aeruginosa isolates from 115 Scandinavian patients with cystic fibrosis and in 88 in vitro non-mucoid revertants
-
Ciofu O, Lee B, Johannesson M, Hermansen NO, Meyer P, et al. (2008) Investigation of the algT operon sequence in mucoid and non-mucoid Pseudomonas aeruginosa isolates from 115 Scandinavian patients with cystic fibrosis and in 88 in vitro non-mucoid revertants. Microbiology 154: 103-113.
-
(2008)
Microbiology
, vol.154
, pp. 103-113
-
-
Ciofu, O.1
Lee, B.2
Johannesson, M.3
Hermansen, N.O.4
Meyer, P.5
-
17
-
-
32444449521
-
Anaerobic killing of mucoid Pseudomonas aeruginosa by acidified nitrite derivatives under cystic fibrosis airway conditions
-
Yoon SS, Coakley R, Lau GW, Lymar SV, Gaston B, et al. (2006) Anaerobic killing of mucoid Pseudomonas aeruginosa by acidified nitrite derivatives under cystic fibrosis airway conditions. J Clin Invest 116: 436-446.
-
(2006)
J Clin Invest
, vol.116
, pp. 436-446
-
-
Yoon, S.S.1
Coakley, R.2
Lau, G.W.3
Lymar, S.V.4
Gaston, B.5
-
18
-
-
77950648700
-
Genetic adaptation of Pseudomonas aeruginosa during chronic lung infection of patients with cystic fibrosis: Strong and weak mutators with heterogeneous genetic backgrounds emerge in mucA and/or lasR mutants
-
Ciofu O, Mandsberg LF, Bjarnsholt T, Wassermann T, Høiby N (2010) Genetic adaptation of Pseudomonas aeruginosa during chronic lung infection of patients with cystic fibrosis: strong and weak mutators with heterogeneous genetic backgrounds emerge in mucA and/or lasR mutants. Microbiology 156: 1108-1119.
-
(2010)
Microbiology
, vol.156
, pp. 1108-1119
-
-
Ciofu, O.1
Mandsberg, L.F.2
Bjarnsholt, T.3
Wassermann, T.4
Høiby, N.5
-
19
-
-
33845623880
-
Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosis
-
Hogardt M, Hoboth C, Schmoldt S, Henke C, Bader L, et al. (2007) Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosis. J Infect Dis 195: 70-80.
-
(2007)
J Infect Dis
, vol.195
, pp. 70-80
-
-
Hogardt, M.1
Hoboth, C.2
Schmoldt, S.3
Henke, C.4
Bader, L.5
-
20
-
-
33845446266
-
Role of Pseudomonas aeruginosa dinB-encoded DNA polymerase IV in mutagenesis
-
Sanders LH, Rockel A, Lu H, Wozniak DJ, Sutton MD (2006) Role of Pseudomonas aeruginosa dinB-encoded DNA polymerase IV in mutagenesis. J Bacteriol 188: 8573-8585.
-
(2006)
J Bacteriol
, vol.188
, pp. 8573-8585
-
-
Sanders, L.H.1
Rockel, A.2
Lu, H.3
Wozniak, D.J.4
Sutton, M.D.5
-
21
-
-
58149197594
-
Pseudomonas Genome Database: Facilitating user-friendly, comprehensive comparisons of microbial genomes
-
Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, et al. (2009) Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Res 37: D483-488.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Winsor, G.L.1
Van Rossum, T.2
Lo, R.3
Khaira, B.4
Whiteside, M.D.5
-
22
-
-
70449403422
-
Mobyle: A new full web bioinformatics framework
-
Néron B, Ménager H, Maufrais C, Joly N, Maupetit J, et al. (2009) Mobyle: a new full web bioinformatics framework. Bioinformatics 25: 3005-3011.
-
(2009)
Bioinformatics
, vol.25
, pp. 3005-3011
-
-
Néron, B.1
Ménager, H.2
Maufrais, C.3
Joly, N.4
Maupetit, J.5
-
23
-
-
84863304598
-
-
R Core Team ISBN 3-900051-07-0. R Foundation for Statistical Computing. Vienna, Austria, 2013
-
R Core Team (2013) R: A language and environment for statistical computing. ISBN 3-900051-07-0. R Foundation for Statistical Computing. Vienna, Austria, 2013. url: http://www.R-project.org.
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
|