메뉴 건너뛰기




Volumn 281, Issue 4, 2014, Pages 1241-1255

Fluorescence resonance energy transfer based on interaction of PII and PipX proteins provides a robust and specific biosensor for 2-oxoglutarate, a central metabolite and a signalling molecule

Author keywords

cyanobacteria; fluorescence resonance energy transfer; nitrogen metabolism; protein protein interaction; signal transduction

Indexed keywords

2 OXOGLUTARIC ACID; ALPHA-KETOGLUTARIC ACID; BACTERIAL PROTEIN; NITROGEN REGULATORY PROTEIN; PROTEIN BINDING;

EID: 84894281816     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.12702     Document Type: Article
Times cited : (12)

References (42)
  • 1
    • 0014840975 scopus 로고
    • The history of the tricarboxylic acid cycle
    • Krebs HA, (1970) The history of the tricarboxylic acid cycle. Perspect Biol Med 14, 154-170.
    • (1970) Perspect Biol Med , vol.14 , pp. 154-170
    • Krebs, H.A.1
  • 3
    • 33846449882 scopus 로고    scopus 로고
    • Metabolic disorders in diabetes mellitus: Impact of mitochondrial function and oxidative stress on diabetes and its complications
    • Araki E, &, Miyazaki J, (2007) Metabolic disorders in diabetes mellitus: impact of mitochondrial function and oxidative stress on diabetes and its complications. Antioxid Redox Signal 9, 289-291.
    • (2007) Antioxid Redox Signal , vol.9 , pp. 289-291
    • Araki, E.1    Miyazaki, J.2
  • 4
    • 0034864018 scopus 로고    scopus 로고
    • Mitochondrial involvement in brain function and dysfunction: Relevance to aging, neurodegenerative disorders and longevity
    • Calabrese V, Scapagnini G, Giuffrida SAM, Bates TE, &, Clark JB, (2001) Mitochondrial involvement in brain function and dysfunction: relevance to aging, neurodegenerative disorders and longevity. Neurochem Res 26, 739-764.
    • (2001) Neurochem Res , vol.26 , pp. 739-764
    • Calabrese, V.1    Scapagnini, G.2    Giuffrida, S.A.M.3    Bates, T.E.4    Clark, J.B.5
  • 6
    • 69649103279 scopus 로고    scopus 로고
    • PII in higher plants: A modern role for an ancient protein
    • Uhrig RG, Ng KK, &, Moorhead GB, (2009) PII in higher plants: a modern role for an ancient protein. Trends Plant Sci 14, 505-511.
    • (2009) Trends Plant Sci , vol.14 , pp. 505-511
    • Uhrig, R.G.1    Ng, K.K.2    Moorhead, G.B.3
  • 8
    • 2642530192 scopus 로고    scopus 로고
    • Global carbon/nitrogen control by PII signal transduction in cyanobacteria: From signals to targets
    • Forchhammer K, (2004) Global carbon/nitrogen control by PII signal transduction in cyanobacteria: from signals to targets. FEMS Microbiol Rev 28, 319-333.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 319-333
    • Forchhammer, K.1
  • 9
    • 84873303080 scopus 로고    scopus 로고
    • PII signal transduction proteins: Nitrogen regulation and beyond
    • Huergo LF, Chandra G, &, Merrick M, (2013) PII signal transduction proteins: nitrogen regulation and beyond. FEMS Microbiol Rev 37, 251-283.
    • (2013) FEMS Microbiol Rev , vol.37 , pp. 251-283
    • Huergo, L.F.1    Chandra, G.2    Merrick, M.3
  • 10
    • 78650535041 scopus 로고    scopus 로고
    • Mechanism of 2-oxoglutarate signaling by the Synechococcus elongatus PII signal transduction protein
    • Fokina O, Chellamuthu V-R, Forchhammer K, &, Zeth K, (2010) Mechanism of 2-oxoglutarate signaling by the Synechococcus elongatus PII signal transduction protein. Proc Natl Acad Sci USA 107, 19760-19765.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 19760-19765
    • Fokina, O.1    Chellamuthu, V.-R.2    Forchhammer, K.3    Zeth, K.4
  • 11
    • 85027928325 scopus 로고    scopus 로고
    • Characterization of two critical residues in the effector-binding domain of NtcA in the cyanobacterium Anabaena sp. Strain PCC 7120
    • Chen YF, Motteux O, Bedu S, Li YZ, &, Zhang CC, (2011) Characterization of two critical residues in the effector-binding domain of NtcA in the cyanobacterium Anabaena sp. strain PCC 7120. Curr Microbiol 63, 32-38.
    • (2011) Curr Microbiol , vol.63 , pp. 32-38
    • Chen, Y.F.1    Motteux, O.2    Bedu, S.3    Li, Y.Z.4    Zhang, C.C.5
  • 12
    • 77955446124 scopus 로고    scopus 로고
    • Structural basis for the allosteric control of the global transcription factor NtcA by the nitrogen starvation signal 2-oxoglutarate
    • Zhao MX, Jiang YL, He YX, Chen YF, Teng YB, Chen Y, Zhang CC, &, Zhou CZ, (2010a) Structural basis for the allosteric control of the global transcription factor NtcA by the nitrogen starvation signal 2-oxoglutarate. Proc Natl Acad Sci USA 107, 12487-12492.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 12487-12492
    • Zhao, M.X.1    Jiang, Y.L.2    He, Y.X.3    Chen, Y.F.4    Teng, Y.B.5    Chen, Y.6    Zhang, C.C.7    Zhou, C.Z.8
  • 13
    • 22244491018 scopus 로고    scopus 로고
    • Nonmetabolizable analogue of 2-oxoglutarate elicits heterocyst differentiation under repressive conditions in Anabaena sp. PCC 7120
    • Laurent S, Chen H, Bédu S, Ziarelli F, Peng L, &, Zhang C-C, (2005) Nonmetabolizable analogue of 2-oxoglutarate elicits heterocyst differentiation under repressive conditions in Anabaena sp. PCC 7120. Proc Natl Acad Sci USA 102, 9907-9912.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9907-9912
    • Laurent, S.1    Chen, H.2    Bédu, S.3    Ziarelli, F.4    Peng, L.5    Zhang, C.-C.6
  • 14
    • 4944254527 scopus 로고    scopus 로고
    • Cell-type specific modification of PII is involved in the regulation of nitrogen metabolism in the cyanobacterium Anabaena PCC 7120
    • Laurent S, Forchhammer K, Gonzalez L, Heulin T, Zhang C-C, &, Bédu S, (2004) Cell-type specific modification of PII is involved in the regulation of nitrogen metabolism in the cyanobacterium Anabaena PCC 7120. FEBS Lett 576, 261-265.
    • (2004) FEBS Lett , vol.576 , pp. 261-265
    • Laurent, S.1    Forchhammer, K.2    Gonzalez, L.3    Heulin, T.4    Zhang, C.-C.5    Bédu, S.6
  • 15
    • 4444236823 scopus 로고    scopus 로고
    • Cellular differentiation and the NtcA transcription factor in filamentous cyanobacteria
    • Herrero A, Muro-Pastor AM, Valladares A, &, Flores E, (2004) Cellular differentiation and the NtcA transcription factor in filamentous cyanobacteria. FEMS Microbiol Rev 28, 469-487.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 469-487
    • Herrero, A.1    Muro-Pastor, A.M.2    Valladares, A.3    Flores, E.4
  • 18
    • 77956895972 scopus 로고    scopus 로고
    • Crystal structure of the cyanobacterial signal transduction protein PII in complex with PipX
    • Zhao MX, Jiang YL, Xu BY, Chen Y, Zhang CC, &, Zhou CZ, (2010b) Crystal structure of the cyanobacterial signal transduction protein PII in complex with PipX. J Mol Biol 402, 552-559.
    • (2010) J Mol Biol , vol.402 , pp. 552-559
    • Zhao, M.X.1    Jiang, Y.L.2    Xu, B.Y.3    Chen, Y.4    Zhang, C.C.5    Zhou, C.Z.6
  • 19
    • 33748509737 scopus 로고    scopus 로고
    • Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA
    • Espinosa J, Forchhammer K, Burillo S, &, Contreras A, (2006) Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA. Mol Microbiol 61, 457-469.
    • (2006) Mol Microbiol , vol.61 , pp. 457-469
    • Espinosa, J.1    Forchhammer, K.2    Burillo, S.3    Contreras, A.4
  • 20
    • 33947367418 scopus 로고    scopus 로고
    • Role of the Synechococcus PCC 7942 nitrogen regulator protein PipX in NtcA-controlled processes
    • Espinosa J, Forchhammer K, &, Contreras A, (2007) Role of the Synechococcus PCC 7942 nitrogen regulator protein PipX in NtcA-controlled processes. Microbiology 153, 711-718.
    • (2007) Microbiology , vol.153 , pp. 711-718
    • Espinosa, J.1    Forchhammer, K.2    Contreras, A.3
  • 21
    • 34249724978 scopus 로고    scopus 로고
    • Imaging proteins in vivo using fluorescence lifetime microscopy
    • Festy F, Ameer-Beg SM, Ng T, &, Suhling K, (2007) Imaging proteins in vivo using fluorescence lifetime microscopy. Mol BioSyst 3, 381-391.
    • (2007) Mol BioSyst , vol.3 , pp. 381-391
    • Festy, F.1    Ameer-Beg, S.M.2    Ng, T.3    Suhling, K.4
  • 22
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • Roy R, Hohng S, &, Ha T, (2008) A practical guide to single-molecule FRET. Nat Methods 5, 507-516.
    • (2008) Nat Methods , vol.5 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 23
    • 65449153321 scopus 로고    scopus 로고
    • Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging
    • Carlson HJ, &, Campbell RE, (2009) Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging. Curr Opin Biotechnol 20, 19-27.
    • (2009) Curr Opin Biotechnol , vol.20 , pp. 19-27
    • Carlson, H.J.1    Campbell, R.E.2
  • 24
    • 10744224596 scopus 로고    scopus 로고
    • Flow cytometric measurement of fluorescence (Förster) resonance energy transfer from cyan fluorescent protein to yellow fluorescent protein using single-laser excitation at 458 nm
    • He L, Bradrick TD, Karpova TS, Wu X, Fox MH, Fischer R, McNally JG, Knutson JR, Grammer AC, &, Lipsky PE, (2003) Flow cytometric measurement of fluorescence (Förster) resonance energy transfer from cyan fluorescent protein to yellow fluorescent protein using single-laser excitation at 458 nm. Cytometry 53A, 39-54.
    • (2003) Cytometry , vol.53 A , pp. 39-54
    • He, L.1    Bradrick, T.D.2    Karpova, T.S.3    Wu, X.4    Fox, M.H.5    Fischer, R.6    McNally, J.G.7    Knutson, J.R.8    Grammer, A.C.9    Lipsky, P.E.10
  • 25
    • 58549087359 scopus 로고    scopus 로고
    • Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway
    • Kentner D, &, Sourjik V, (2009) Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway. Mol Syst Biol 5, 238.
    • (2009) Mol Syst Biol , vol.5 , pp. 238
    • Kentner, D.1    Sourjik, V.2
  • 26
    • 33845347348 scopus 로고    scopus 로고
    • Protein biosensors based on the principle of fluorescence resonance energy transfer for monitoring cellular dynamics
    • Li IT, Pham E, &, Truong K, (2006) Protein biosensors based on the principle of fluorescence resonance energy transfer for monitoring cellular dynamics. Biotechnol Lett 28, 1971-1982.
    • (2006) Biotechnol Lett , vol.28 , pp. 1971-1982
    • Li, I.T.1    Pham, E.2    Truong, K.3
  • 27
    • 84883291918 scopus 로고    scopus 로고
    • Extensive use of FRET in biological imaging
    • Arai Y, &, Nagai T, (2013) Extensive use of FRET in biological imaging. Microscopy 62, 419-428.
    • (2013) Microscopy , vol.62 , pp. 419-428
    • Arai, Y.1    Nagai, T.2
  • 28
    • 0030930216 scopus 로고    scopus 로고
    • SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages
    • Buchmeier N, Bossie S, Chen CY, Fang FC, Guiney DG, &, Libby SJ, (1997) SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages. Infect Immun 65, 3725-3730.
    • (1997) Infect Immun , vol.65 , pp. 3725-3730
    • Buchmeier, N.1    Bossie, S.2    Chen, C.Y.3    Fang, F.C.4    Guiney, D.G.5    Libby, S.J.6
  • 29
    • 77957281357 scopus 로고    scopus 로고
    • Control of AmtB-GlnK complex formation by intracellular levels of ATP, ADP, and 2-oxoglutarate
    • Radchenko MV, Thornton J, &, Merrick M, (2010) Control of AmtB-GlnK complex formation by intracellular levels of ATP, ADP, and 2-oxoglutarate. J Biol Chem 285, 31037-31045.
    • (2010) J Biol Chem , vol.285 , pp. 31037-31045
    • Radchenko, M.V.1    Thornton, J.2    Merrick, M.3
  • 30
    • 84881419702 scopus 로고    scopus 로고
    • PII signal transduction proteins are ATPases whose activity is regulated by 2-oxoglutarate
    • Radchenko MV, Thornton J, &, Merrick M, (2013) PII signal transduction proteins are ATPases whose activity is regulated by 2-oxoglutarate. Proc Natl Acad Sci USA 110, 12948-12953.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 12948-12953
    • Radchenko, M.V.1    Thornton, J.2    Merrick, M.3
  • 31
    • 84881396485 scopus 로고    scopus 로고
    • ATPase as a switch in PII signal transduction
    • Zhang CC, &, Zhou CZ, (2013) ATPase as a switch in PII signal transduction. Proc Natl Acad Sci USA 110, 12863-12864.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 12863-12864
    • Zhang, C.C.1    Zhou, C.Z.2
  • 32
    • 79957865467 scopus 로고    scopus 로고
    • 2-Difluoromethylene-4-methylenepentanoic acid, a paradoxical probe able to mimic the signaling role of 2-oxoglutaric acid in cyanobacteria
    • Liu X, Chen H, Laurini E, Wang Y, Dal Col V, Posocco P, Ziarelli F, Fermeglia M, Zhang CC, Pricl S, et al,. (2011) 2-Difluoromethylene-4- methylenepentanoic acid, a paradoxical probe able to mimic the signaling role of 2-oxoglutaric acid in cyanobacteria. Organic Lett 13, 2924-2927.
    • (2011) Organic Lett , vol.13 , pp. 2924-2927
    • Liu, X.1    Chen, H.2    Laurini, E.3    Wang, Y.4    Dal Col, V.5    Posocco, P.6    Ziarelli, F.7    Fermeglia, M.8    Zhang, C.C.9    Pricl, S.10
  • 33
    • 81355127364 scopus 로고    scopus 로고
    • Alpha-ketoglutarate coordinates carbon and nitrogen utilization via enzyme i inhibition
    • Doucette CD, Schwab DJ, Wingreen NS, &, Rabinowitz JD, (2011) Alpha-ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition. Nat Chem Biol 7, 894-901.
    • (2011) Nat Chem Biol , vol.7 , pp. 894-901
    • Doucette, C.D.1    Schwab, D.J.2    Wingreen, N.S.3    Rabinowitz, J.D.4
  • 34
    • 34547634728 scopus 로고    scopus 로고
    • PH of the cytoplasm and periplasm of Escherichia coli: Rapid measurement by green fluorescent protein fluorimetry
    • Wilks JC, &, Slonczewski JL, (2007) pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J Bacteriol 189, 5601-5607.
    • (2007) J Bacteriol , vol.189 , pp. 5601-5607
    • Wilks, J.C.1    Slonczewski, J.L.2
  • 35
    • 0031449303 scopus 로고    scopus 로고
    • The relationship between intracellular pH, growth characteristics and calcium in the cyanobacterium Anabaena sp. Strain PCC7120 exposed to low pH
    • Giraldez Ruiz N, Mateo P, Bonilla I, &, Fernandez Pinas F, (1997) The relationship between intracellular pH, growth characteristics and calcium in the cyanobacterium Anabaena sp. strain PCC7120 exposed to low pH. New Phytol 137, 599-605.
    • (1997) New Phytol , vol.137 , pp. 599-605
    • Giraldez Ruiz, N.1    Mateo, P.2    Bonilla, I.3    Fernandez Pinas, F.4
  • 38
    • 0021929046 scopus 로고
    • Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187
    • Alatossava T, Jütte H, Kuhn A, &, Kellenberger E, (1985) Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187. J Bacteriol 162, 413-419.
    • (1985) J Bacteriol , vol.162 , pp. 413-419
    • Alatossava, T.1    Jütte, H.2    Kuhn, A.3    Kellenberger, E.4
  • 41
    • 34250885891 scopus 로고    scopus 로고
    • An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins
    • Ohashi T, Galiacy SD, Briscoe G, &, Erickson HP, (2007) An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins. Protein Sci 16, 1429-1438.
    • (2007) Protein Sci , vol.16 , pp. 1429-1438
    • Ohashi, T.1    Galiacy, S.D.2    Briscoe, G.3    Erickson, H.P.4
  • 42
    • 79960930689 scopus 로고    scopus 로고
    • Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling
    • doi: 10.1371/journal.pone.0023126
    • Volkmer B, &, Heinemann M, (2011) Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling. PLoS One 6, e23126. doi: 10.1371/journal.pone.0023126.
    • (2011) PLoS One , vol.6
    • Volkmer, B.1    Heinemann, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.