The evolution of tetraspanins through a phylogenetic lens

Tetraspanins

Volumn , Issue , 2013, Pages 31-45

  DeSalle, Rob ^a   Sun, Tung Tien ^b   Bergmann, Tjard ^c   Garcia España, Antonio ^d  

^a DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

^b NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF APPLIED SCIENCES AND ARTS   (Germany)

^d HOSPITAL UNIVERSITARI JOAN XXIII   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84894275146     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-94-007-6070-7_2     Document Type: Chapter

References (26)

1. Boucheix C, Rubinstein E (2001) Tetraspanins. Cell Mol Life Sci 58:1189-1205
2. Chiu JC et al (2006) OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22:699-707
3. DeSalle R, Mares R, Garcia-España A (2010) Evolution of cysteine patterns in the large extracellular loop of tetraspanins from animals, fungi, plants and single-celled eukaryotes. Mol Phylogenet Evol 56:486-491
4. Doolittle RF et al (1996) Determining divergence times of the major kingdoms of living organisms with a protein clock. Science 271:470-477
5. Farris JS, Albert VA, Källersjö M, Lipscomb D, Kluge AG (1996) Parsimony jackknifing outperforms neighbor-joining. Cladistics 12:99-124
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
7. Felsenstein J (2004) Inferring phylogenies. Sinauer Associates, Sunderland
8. Garcia-España A, DeSalle R (2009) Intron sliding in tetraspanins. Commun Integr Biol 2:1-3
9. Garcia-España A, Chung PJ, Zhao X, Lee A, Pellicer A, Yu J, Sun TT, DeSalle R (2006) Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: implications for uroplakin structure and function. Mol Phylogenet Evol 41:355-367
10. Garcia-España A, Chung PJ, Sarkar IN, Stiner E, Sun TT, DeSalle R (2008) Appearance of new tetraspanin genes during vertebrate evolution. Genomics 91:326-334
11. Garcia-España A, Mares R, Sun TT, DeSalle R (2009) Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins. PLoS One 4:e4680
12. Hedges SB, Kumar S (2002) Genomics: vertebrate genomes compared. Science 297:1283-1285
13. Hemler ME (2001) Specific tetraspanin functions. J Cell Biol 155:1103-1107
14. Hemler ME (2003) Tetraspanin proteins mediate cellular penetration, invasion, and fusion events and define a novel type of membrane microdomain. Annu Rev Cell Dev Biol 19:397-422
15. Hillis DM, Huelsenbeck JP (1992) Signal, noise and reliability in molecular phylogenetic analyses. J Hered 83:189-195
16. Hu C et al (2005) Assembly of urothelial plaques: tetraspanin function in membrane protein trafficking. Mol Biol Cell 16:3937-3950
17. Huang S et al (2005) The phylogenetic analysis of tetraspanins projects the evolution of cell-cell interactions from unicellular to multicellular organisms. Genomics 86:674-684
18. Huelsenbeck JP, Ronquist F (2001) Bayesian, is a reference to Mr. Bayes (http://en.wikipedia.org/wiki/Bayesian_inference). Bioinformatics 17:754-755
19. Levy S, Shoham T (2005a) Protein-protein interactions in the tetraspanin web. Physiology (Bethesda) 20:218-224
20. Levy S, Shoham T (2005b) The tetraspanin web modulates immune-signalling complexes. Nat Rev Immunol 5:136-148
21. Maecker HT, Todd SC, Levy S (1997) The tetraspanin superfamily: molecular facilitators. FASEB J 11:428-442
22. Tarrío R, Ayala FJ, Rodriguez-Trelles F (2008) Alternative splicing: a missing piece in the puzzle of intron gain. Proc Natl Acad Sci USA 105:7223-7228
23. Thornton JW, DeSalle R (2000) Phylogenetics meets genomics: homology and evolution in gene families. Annu Rev Genomics Hum Genet 1:43-72
24. Todres E, Nardi JB, Robertson HM (2000) The tetraspanin superfamily in insects. Insect Mol Biol 9:581-590
25. Tu L, Sun TT, Kreibich G (2002) Specific heterodimer formation is a prerequisite for uroplakins to exit from the endoplasmic reticulum. Mol Biol Cell 13:4221-4230
26. Zemni R et al (2000) A new gene involved in X-linked mental retardation identified by analysis of an X;2 balanced translocation. Nat Genet 24:167-170