A new multiplex SNP genotyping assay for detecting hybridization and introgression between the M and S molecular forms of Anopheles gambiae

Molecular Ecology Resources

Volumn 14, Issue 2, 2014, Pages 297-305

  Lee, Yoosook ^a   Marsden, Clare D ^a   Nieman, Catelyn ^a   Lanzaro, Gregory C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Ecological genetics; Hybridization; Insects; Population genetics empirical; Speciation

Indexed keywords

ANIMAL; ANOPHELES GAMBIAE; CHIMERA; CLASSIFICATION; GENETICS; GENOTYPING TECHNIQUE; INBREEDING; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; ANOPHELES GAMBIAE; CHIMERA; GENOTYPING TECHNIQUES; INBREEDING; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84894254566     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12181     Document Type: Article

References (46)

1. Ayala FJ, Coluzzi M (2005) Chromosome speciation: humans, Drosophila, and mosquitoes. Proceedings of the National Academy of Sciences of the U S A, 102(Suppl 1), 6535-6542.
2. Caputo B, Nwakanma D, Jawara M et al. (2008) Anopheles gambiae complex along The Gambia river, with particular reference to the molecular forms of An. gambiae s.s. Malaria Journal, 7, 182.
3. Caputo B, Santolamazza F, Vicente JL et al. (2011) The "far-west" of Anopheles gambiae molecular forms. PLoS ONE, 6, e16415.
4. Chandre F, Manguin S, Brengues C et al. (1999) Current distribution of a pyrethroid resistance gene (kdr) in Anopheles gambiae complex from west Africa and further evidence for reproductive isolation of the Mopti form. Parassitologia, 41, 319-322.
5. Coetzee M, Hunt RH, Wilkerson RC et al. (2013) Anopheles coluzzii and Anopheles amharicus, new members of the Anopheles gambiae complex. Zootaxa, 3619, 246-274.
6. Diabate A, Dabire RK, Millogo N, Lehmann T (2007) Evaluating the effect of postmating isolation between molecular forms of Anopheles gambiae (Diptera: Culicidae). Journal of Medical Entomology, 44, 60-64.
7. Diabate A, Dao A, Yaro AS et al. (2009) Spatial swarm segregation and reproductive isolation between the molecular forms of Anopheles gambiae. Proceedings. Biological Sciences / The Royal Society, 276, 4215-4222.
8. Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
9. Fanello C, Santolamazza F, Della Torre A (2002) Simultaneous identification of species and molecular forms of the Anopheles gambiae complex by PCR-RFLP. Medical and Veterinary Entomology, 16, 461-464.
10. Favia G, Della Torre A, Bagayoko M et al. (1997) Molecular identification of sympatric chromosomal forms of Anopheles gambiae and further evidence of their reproductive isolation. Insect Molecular Biology, 6, 377-383.
11. Favia G, Lanfrancotti A, Spanos L, Siden-Kiamos I, Louis C (2001) Molecular characterization of ribosomal DNA polymorphisms discriminating among chromosomal forms of Anopheles gambiae s.s. Insect Molecular Biology, 10, 19-23.
12. Fu JF, Shi JY, Zhao WL et al. (2008) MassARRAY assay: a more accurate method for JAK2V617F mutation detection in Chinese patients with myeloproliferative disorders. Leukemia, 22, 660-663.
13. Gentile G, Della Torre A, Maegga B, Powell JR, Caccone A (2002) Genetic differentiation in the African malaria vector, Anopheles gambiae s.s., and the problem of taxonomic status. Genetics, 161, 1561-1578.
14. Gimonneau G, Pombi M, Choisy M et al. (2012) Larval habitat segregation between the molecular forms of the mosquito Anopheles gambiae in a rice field area of Burkina Faso, West Africa. Medical and Veterinary Entomology, 26, 9-17.
15. Hahn MW, White BJ, Muir CD, Besansky NJ (2012) No evidence for biased co-transmission of speciation islands in Anopheles gambiae. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 367, 374-384.
16. Jurinke C, van den Boom D, Cantor CR, Koster H (2002) Automated genotyping using the DNA MassArray technology. Methods in Molecular Biology, 187, 179-192.
17. Lanzaro GC, Toure YT, Carnahan J et al. (1998) Complexities in the genetic structure of Anopheles gambiae populations in west Africa as revealed by microsatellite DNA analysis. Proceedings of the National Academy of Sciences of the USA, 95, 14260-14265.
18. Lawniczak MK, Emrich SJ, Holloway AK et al. (2010) Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science, 330, 512-514.
19. Lee Y, Meneses CR, Fofana A, Lanzaro GC (2009) Desiccation resistance among subpopulations of Anopheles gambiae s.s. from Selinkenyi, Mali. Journal of Medical Entomology, 46, 316-320.
20. Lehmann T, Diabate A (2008) The molecular forms of Anopheles gambiae: a phenotypic perspective. Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases, 8, 737-746.
21. Manoukis NC, Powell JR, Touré MB et al. (2008) A test of the chromosomal theory of ecotypic speciation in Anopheles gambiae. Proceedings of the National Academy of Sciences of the U S A, 105, 2940-2945.
22. Manoukis NC, Diabate A, Abdoulaye A et al. (2009) Structure and dynamics of male swarms of Anopheles gambiae. Journal of Medical Entomology, 46, 227-235.
23. Marsden CD, Lee Y, Nieman CC et al. (2011) Asymmetric introgression between the M and S forms of the malaria vector, Anopheles gambiae, maintains divergence despite extensive hybridization. Molecular Ecology, 20, 4983-4994.
24. Marsden CD, Cornel AJ, Lee Y et al. (2012) An analysis of two island groups as potential sites for trials of transgenic mosquitoes for malaria control. Evolutionary Applications, 6, 706-720.
25. Neafsey DE, Lawniczak MK, Park DJ et al. (2010) SNP genotyping defines complex gene-flow boundaries among African malaria vector mosquitoes. Science, 330, 514-517.
26. Oliveira E, Salgueiro P, Palsson K et al. (2008) High levels of hybridization between molecular forms of Anopheles gambiae from Guinea Bissau. Journal of Medical Entomology, 45, 1057-1063.
27. Riehle MM, Guelbeogo WM, Gneme A et al. (2011) A cryptic subgroup of Anopheles gambiae is highly susceptible to human malaria parasites. Science, 331, 596-598.
28. Sanford MR, Demirci B, Marsden CD et al. (2011) Morphological differentiation may mediate mate-choice between incipient species of Anopheles gambiae s.s. PLoS ONE, 6, e27920.
29. Santolamazza F, Della Torre A, Caccone A (2004) Short report: a new polymerase chain reaction-restriction fragment length polymorphism method to identify Anopheles arabiensis from An. gambiae and its two molecular forms from degraded DNA templates or museum samples. American Journal of Tropical Medicine and Hygiene, 70, 604-606.
30. Santolamazza F, Mancini E, Simard F et al. (2008) Insertion polymorphisms of SINE200 retrotransposons within speciation islands of Anopheles gambiae molecular forms. Malaria Journal, 7, 163.
31. Santolamazza F, Caputo B, Calzetta M et al. (2011) Comparative analyses reveal discrepancies among results of commonly used methods for Anopheles gambiae molecular form identification. Malaria Journal, 10, 215.
32. Scott JA, Brogdon WG, Collins FH (1993) Identification of single specimens of the Anopheles gambiae complex by the polymerase chain reaction. American Journal of Tropical Medicine and Hygiene, 49, 520-529.
33. Stump AD, Fitzpatrick MC, Lobo NF et al. (2005) Centromere-proximal differentiation and speciation in Anopheles gambiae. Proceedings of the National Academy of Sciences of the U S A, 102, 15930-15935.
34. Teeter KC, Thibodeau LM, Gompert Z et al. (2010) The variable genomic architecture of isolation between hybridizing species of house mice. Evolution, 64, 472-485.
35. della Torre A, Tu Z, Petrarca V (2005) On the distribution and genetic differentiation of Anopheles gambiae s.s. molecular forms. Insect Biochemistry and Molecular Biology, 35, 755-769.
36. Tripet F, Toure YT, Taylor CE et al. (2001) DNA analysis of transferred sperm reveals significant levels of gene flow between molecular forms of Anopheles gambiae. Molecular Ecology, 10, 1725-1732.
37. Tripet F, Wright J, Cornel A et al. (2007) Longitudinal survey of knockdown resistance to pyrethroid (kdr) in Mali, West Africa, and evidence of its emergence in the Bamako form of Anopheles gambiae s.s. American Journal of Tropical Medicine and Hygiene, 76, 81-87.
38. Turner TL, Hahn MW (2007) Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae. Molecular Biology and Evolution, 24, 2132-2138.
39. Turner TL, Hahn MW, Nuzhdin SV (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biology, 3, e285.
40. Wang R, Zheng L, Toure YT, Dandekar T, Kafatos FC (2001) When genetic distance matters: measuring genetic differentiation at microsatellite loci in whole-genome scans of recent and incipient mosquito species. Proceedings of the National Academy of Sciences of the U S A, 98, 10769-10774.
41. Wang-Sattler R, Blandin S, Ning Y et al. (2007) Mosaic genome architecture of the Anopheles gambiae species complex. PLoS ONE, 2, e1249.
42. Weetman D, Wilding CS, Steen K, Pinto J, Donnelly MJ (2012) Gene flow-dependent genomic divergence between Anopheles gambiae M and S forms. Molecular Biology and Evolution, 29, 279-291.
43. White BJ, Cheng C, Simard F, Costantini C, Besansky NJ (2010) Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae. Molecular Ecology, 19, 925-939.
44. Wondji C, Frederic S, Petrarca V et al. (2005) Species and populations of the Anopheles gambiae complex in Cameroon with special emphasis on chromosomal and molecular forms of Anopheles gambiae s.s. Journal of Medical Entomology, 42, 998-1005.
45. Wright WT, Heggarty SV, Young IS et al. (2008) Multiplex MassARRAY spectrometry (iPLEX) produces a fast and economical test for 56 familial hypercholesterolaemia-causing mutations. Clinical Genetics, 74, 463-468.
46. Zhang SJ, Qiu HX, Li JY, Shi JY, Xu W (2010) The analysis of JAK2 and MPL mutations and JAK2 single nucleotide polymorphisms in MPN patients by MassARRAY assay. International Journal of Laboratory Hematology, 32, 381-386.