Loss of olfactory receptor function in hominin evolution

PLoS ONE

Volumn 9, Issue 1, 2014, Pages

  Hughes, Graham M ^a   Teeling, Emma C ^a   Higgins, Desmond G ^a  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMALS; BIOLOGICAL EVOLUTION; DATABASES, NUCLEIC ACID; EVOLUTION, MOLECULAR; GENOME; GENOMICS; HOMINIDAE; HUMANS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OLFACTORY RECEPTOR NEURONS; PHYLOGENY; RECEPTORS, ODORANT; SEQUENCE ALIGNMENT;

EID: 84894250331     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0084714     Document Type: Article

References (21)

1. Green R, Krause J, Briggs AW, Maricic T, Stenzel U, et al. (2010) A draft sequence of the Neanderthal genome. Science 328: 710-722.
2. Bastir M, Rosas A, Gunz P, Peña-Melian A, Manzi G, et al. (2011) Evolution of the base of the brain in highly encephalized human species. Nat Comm 2: 588.
3. Schriever VA, Reither N, Gerber J, Iannilli E, Hummel T (2013) Olfactory bulb volume in smokers. Exp Brain Res 225: 153-157.
4. Hardy BL (2010) Climatic variability and plant food distribution in Pleistocene Europe: Implications for Neandertal diet and subsistence. Quat Sci Rev 29: 662-679.
5. Krause J, Fu Q, Good JM, Viola B, Shunkov MV, et al. (2010) The complete mitochondrial DNA genome of an unkown hominin from southern Siberia. Nature 464: 894-897.
6. Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, et al. (2012) A high-coverage genome sequence from an archaic Denisovan individual. Science 338: 222-226.
7. Gaillard I, Rouquier S, Giorgi D (2004) Olfactory receptors. Cell Mol Life Sci 61: 456-469. (Pubitemid 38316581)
8. Hayden S, Bekaert M, Crider TA, Mariani S, Murphy WJ, et al. (2010) Ecological adaptation determines functional mammalian olfactory subgenomes. Genome Res 20: 1-9.
9. Olender T, Waszak SM, Viavant M, Khen M, Ben-Asher E, et al. (2012) Personal receptor repertoires: olfaction as a model. BMC Genomics 13: 414.
10. Glusman G, Yanai I, Rubin I, Lancet D (2001) The complete human olfactory subgenome. Genome Res 11: 685-702. (Pubitemid 32447857)
11. Go Y, Niimura Y (2008) Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Mol Biol Evol 25: 1897-1907.
12. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25: 2078-2079.
13. Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10: R25.
14. Gilad Y, Wiebe V, Przeworski M, Lancet D, Pääbo S (2004) Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. PLoS Biol 2: e5.
15. Sievers F, Wilm A, Dineen DG, Gibson TJ, Karplus K, et al. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using clustal Omega. Mol Syst Biol 7: 539.
16. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data, Genome Res 20: 1297-1303.
17. DePristo M, Banks E, Poplin R, Garimella K, Maguire J, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics 43: 491-498.
18. Briggs AW, Stenzel U, Johnson PLF, Green RE, Kelso J, et al. (2007) Patterns of damage in genomic DNA sequences from a Neanderthal. Proc Natl Acad Sci USA 104: 14616-14621. (Pubitemid 350003193)
19. Reich D, Green RE, Kircher M, Krause J, Patterson N, et al. (2010) Genetic history of an archaic hominin group from Denisova cave in Siberia. Nature 468: 1053-1060.
20. Martin F, Riveron J, Alcorta E (2011) Environmental temperature modulates olfactory reception in Drosophila melanogaster. J Insect Physiol 57: 1631-1642.
21. DeMaria S, Ngai J (2010) The cell biology of smell. J Cell Biol 191: 443-452.