Norspermidine is not a self-produced trigger for biofilm disassembly

Cell

Volumn 156, Issue 4, 2014, Pages 844-854

  Hobley, Laura ^a   Kim, Sok Ho ^b   Maezato, Yukari ^b   Wyllie, Susan ^a   Fairlamb, Alan H ^a   Stanley Wall, Nicola R ^a   Michael, Anthony J ^b  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EXOPOLYSACCHARIDE; NITROGEN; NORSPERMIDINE; POLYAMINE DERIVATIVE; SPERMIDINE; UNCLASSIFIED DRUG; ADENOSYLMETHIONINE DECARBOXYLASE; SPERMIDINE DERIVATIVE;

AMINO ACID SEQUENCE; AMINO ACID SYNTHESIS; ARTICLE; BACILLUS SUBTILIS; BACTERIAL STRAIN; BIOFILM; BIOSYNTHESIS; CAMPYLOBACTER JEJUNI; CARBON SOURCE; CONCENTRATION (PARAMETERS); DERIVATIZATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; INHIBITION KINETICS; NONHUMAN; POLYAMINE METABOLISM; PRIORITY JOURNAL; PROTEIN FUNCTION; VIBRIO CHOLERAE; WILD TYPE; BACTERIAL GENOME; BACTERIAL GROWTH; CATABOLISM; CELL ENCAPSULATION; CONTROLLED STUDY; EXTRACELLULAR MATRIX; LIMIT OF DETECTION;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BIOFILMS; GAMMA-AMINOBUTYRIC ACID; MOLECULAR SEQUENCE DATA; PLANKTON; SEQUENCE ALIGNMENT; SPERMIDINE; VIBRIO CHOLERAE;

EID: 84894216936     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.01.012     Document Type: Article

References (41)

1. B.R. Belitsky, and A.L. Sonenshein GabR, a member of a novel protein family, regulates the utilization of gamma-aminobutyrate in Bacillus subtilis Mol. Microbiol. 45 2002 569 583 (Pubitemid 34779845)
2. S.S. Branda, J.E. González-Pastor, S. Ben-Yehuda, R. Losick, and R. Kolter Fruiting body formation by Bacillus subtilis Proc. Natl. Acad. Sci. USA 98 2001 11621 11626 (Pubitemid 32928778)
3. S.S. Branda, S. Vik, L. Friedman, and R. Kolter Biofilms: the matrix revisited Trends Microbiol. 13 2005 20 26 (Pubitemid 40082393)
4. S.S. Branda, F. Chu, D.B. Kearns, R. Losick, and R. Kolter A major protein component of the Bacillus subtilis biofilm matrix Mol. Microbiol. 59 2006 1229 1238
5. M. Burrell, C.C. Hanfrey, E.J. Murray, N.R. Stanley-Wall, and A.J. Michael Evolution and multiplicity of arginine decarboxylases in polyamine biosynthesis and essential role in Bacillus subtilis biofilm formation J. Biol. Chem. 285 2010 39224 39238
6. J.W. Costerton, Z. Lewandowski, D.E. Caldwell, D.R. Korber, and H.M. Lappin-Scott Microbial biofilms Annu. Rev. Microbiol. 49 1995 711 745
7. M.E. Davey, and G.A. O'Toole Microbial biofilms: from ecology to molecular genetics Microbiol. Mol. Biol. Rev. 64 2000 847 867 (Pubitemid 32475933)
8. X. Deng, J. Lee, A.J. Michael, D.R. Tomchick, E.J. Goldsmith, and M.A. Phillips Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine J. Biol. Chem. 285 2010 25708 25719
9. S. Dover, and Y.S. Halpern Genetic analysis of the gamma-aminobutyrate utilization pathway in Escherichia coli K-12 J. Bacteriol. 117 1974 494 501
10. H.C. Flemming, and J. Wingender The biofilm matrix Nat. Rev. Microbiol. 8 2010 623 633
11. R. Gardan, G. Rapoport, and M. Débarbouillé Expression of the rocDEF operon involved in arginine catabolism in Bacillus subtilis J. Mol. Biol. 249 1995 843 856
12. C.R. Harwood, and S.M. Cutting Molecular Biological Methods for Bacillus 1990 John Wiley & Sons Chichester
13. L. Hobley, A. Ostrowski, F.V. Rao, K.M. Bromley, M. Porter, A.R. Prescott, C.E. MacPhee, D.M. van Aalten, and N.R. Stanley-Wall BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm Proc. Natl. Acad. Sci. USA 110 2013 13600 13605
14. H. Ikai, and S. Yamamoto Cloning and expression in Escherichia coli of the gene encoding a novel L-2,4-diaminobutyrate decarboxylase of Acinetobacter baumannii FEMS Microbiol. Lett. 124 1994 225 228
15. H. Ikai, and S. Yamamoto Identification and analysis of a gene encoding L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase involved in the 1,3-diaminopropane production pathway in Acinetobacter baumannii J. Bacteriol. 179 1997 5118 5125 (Pubitemid 27340546)
16. H.S. Joo, and M. Otto Molecular basis of in vivo biofilm formation by bacterial pathogens Chem. Biol. 19 2012 1503 1513
17. P.M. Kabra, H.K. Lee, W.P. Lubich, and L.J. Marton Solid-phase extraction and determination of dansyl derivatives of unconjugated and acetylated polyamines by reversed-phase liquid chromatography: improved separation systems for polyamines in cerebrospinal fluid, urine and tissue J. Chromatogr. A 380 1986 19 32 (Pubitemid 16049858)
18. E. Karatan, and A.J. Michael A wider role for polyamines in biofilm formation Biotechnol. Lett. 35 2013 1715 1717
19. E. Karatan, T.R. Duncan, and P.I. Watnick NspS, a predicted polyamine sensor, mediates activation of Vibrio cholerae biofilm formation by norspermidine J. Bacteriol. 187 2005 7434 7443 (Pubitemid 41507800)
20. T.B. Kiley, and N.R. Stanley-Wall Post-translational control of Bacillus subtilis biofilm formation mediated by tyrosine phosphorylation Mol. Microbiol. 78 2010 947 963
21. K. Kobayashi, and M. Iwano BslA(YuaB) forms a hydrophobic layer on the surface of Bacillus subtilis biofilms Mol. Microbiol. 85 2012 51 66
22. I. Kolodkin-Gal, S. Cao, L. Chai, T. Böttcher, R. Kolter, J. Clardy, and R. Losick A self-produced trigger for biofilm disassembly that targets exopolysaccharide Cell 149 2012 684 692
23. M.A. Konkol, K.M. Blair, and D.B. Kearns Plasmid-encoded ComI inhibits competence in the ancestral 3610 strain of Bacillus subtilis J. Bacteriol. 195 2013 4085 4093
24. J. Lee, V. Sperandio, D.E. Frantz, J. Longgood, A. Camilli, M.A. Phillips, and A.J. Michael An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae J. Biol. Chem. 284 2009 9899 9907
25. M.W. McGinnis, Z.M. Parker, N.E. Walter, A.C. Rutkovsky, C. Cartaya-Marin, and E. Karatan Spermidine regulates Vibrio cholerae biofilm formation via transport and signaling pathways FEMS Microbiol. Lett. 299 2009 166 174
26. A. Mountain, J. McChesney, M.C. Smith, and S. Baumberg Gene sequence encoding early enzymes of arginine synthesis within a cluster in Bacillus subtilis, as revealed by cloning in Escherichia coli J. Bacteriol. 165 1986 1026 1028 (Pubitemid 16071442)
27. H. Nakao, S. Shinoda, and S. Yamamoto Purification and some properties of carboxynorspermidine synthase participating in a novel biosynthetic pathway for norspermidine in Vibrio alginolyticus J. Gen. Microbiol. 137 1991 1737 1742
28. A. Ostrowski, A. Mehert, A. Prescott, T.B. Kiley, and N.R. Stanley-Wall YuaB functions synergistically with the exopolysaccharide and TasA amyloid fibers to allow biofilm formation by Bacillus subtilis J. Bacteriol. 193 2011 4821 4831
29. C.N. Patel, B.W. Wortham, J.L. Lines, J.D. Fetherston, R.D. Perry, and M.A. Oliveira Polyamines are essential for the formation of plague biofilm J. Bacteriol. 188 2006 2355 2363
30. D. Romero, C. Aguilar, R. Losick, and R. Kolter Amyloid fibers provide structural integrity to Bacillus subtilis biofilms Proc. Natl. Acad. Sci. USA 107 2010 2230 2234
31. G. Schneider, H. Käck, and Y. Lindqvist The manifold of vitamin B6 dependent enzymes Structure 8 2000 R1 R6
32. A. Sekowska, P. Bertin, and A. Danchin Characterization of polyamine synthesis pathway in Bacillus subtilis 168 Mol. Microbiol. 29 1998 851 858 (Pubitemid 28365470)
33. A. Sekowska, J.Y. Coppée, J.P. Le Caer, I. Martin-Verstraete, and A. Danchin S-adenosylmethionine decarboxylase of Bacillus subtilis is closely related to archaebacterial counterparts Mol. Microbiol. 36 2000 1135 1147 (Pubitemid 30330684)
34. A. Srivatsan, Y. Han, J. Peng, A.K. Tehranchi, R. Gibbs, J.D. Wang, and R. Chen High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies PLoS Genet. 4 2008 e1000139
35. D.T. Verhamme, T.B. Kiley, and N.R. Stanley-Wall DegU co-ordinates multicellular behaviour exhibited by Bacillus subtilis Mol. Microbiol. 65 2007 554 568 (Pubitemid 47052735)
36. H. Vlamakis, Y. Chai, P. Beauregard, R. Losick, and R. Kolter Sticking together: building a biofilm the Bacillus subtilis way Nat. Rev. Microbiol. 11 2013 157 168
37. B.W. Wortham, M.A. Oliveira, J.D. Fetherston, and R.D. Perry Polyamines are required for the expression of key Hms proteins important for Yersinia pestis biofilm formation Environ. Microbiol. 12 2010 2034 2047
38. S. Yamamoto, K. Hamanaka, Y. Suemoto, B. Ono, and S. Shinoda Evidence for the presence of a novel biosynthetic pathway for norspermidine in Vibrio Can. J. Microbiol. 32 1986 99 103 (Pubitemid 16115571)
39. M. Arnaud, A. Chastanet, and M. Débarbouillé New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria Appl. Environ. Microbiol. 70 2004 6887 6891 (Pubitemid 39518603)
40. R.A. Britton, P. Eichenberger, J.E. Gonzalez-Pastor, P. Fawcett, R. Monson, R. Losick, and A.D. Grossman Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis J. Bacteriol. 184 2002 4881 4890
41. C. Yanisch-Perron, J. Vieira, and J. Messing Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors Gene 33 1985 103 119 (Pubitemid 15122816)