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Volumn 141, Issue 5, 2014, Pages 1161-1166

BLIND ordering of large-scale transcriptomic developmental timecourses

Author keywords

Amphimedon transcriptomic timecourse; Developmental timecourse; Large scale datasets; Principal components analysis; Single embryo RNA seq; Traveling salesman problem

Indexed keywords

AMPHIMEDON TRANSCRIPTOMIC TIMECOURSE; DEVELOPMENTAL TIMECOURSE; LARGE-SCALE DATASETS; PRINCIPAL COMPONENTS ANALYSIS; SINGLE-EMBRYO RNA-SEQ; TRAVELING SALESMAN PROBLEM;

EID: 84894092512     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.105288     Document Type: Article
Times cited : (40)

References (17)
  • 2
    • 84895929339 scopus 로고    scopus 로고
    • The developmental transcriptome of the mosquito aedes aegypti, an invasive species and major arbovirus vector
    • g3.113.006742
    • Akbari, O. S., Antoshechkin, I., Amrhein, H., Williams, B., Diloreto, R., Sandler, J. and Hay, B. A. (2013). The developmental transcriptome of the mosquito aedes aegypti, an invasive species and major arbovirus vector. G3 (Bethesda) g3.113.006742.
    • (2013) G3 (Bethesda)
    • Akbari, O.S.1    Antoshechkin, I.2    Amrhein, H.3    Williams, B.4    Diloreto, R.5    Sandler, J.6    Hay, B.A.7
  • 3
    • 34748861749 scopus 로고    scopus 로고
    • Early development and axis specification in the sea anemone Nematostella vectensis
    • Fritzenwanker, J. H., Genikhovich, G., Kraus, Y. and Technau, U. (2007). Early development and axis specification in the sea anemone Nematostella vectensis. Dev. Biol. 310, 264-279.
    • (2007) Dev. Biol , vol.310 , pp. 264-279
    • Fritzenwanker, J.H.1    Genikhovich, G.2    Kraus, Y.3    Technau, U.4
  • 4
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: Single-cell RNA-Seq by multiplexed linear amplification
    • Hashimshony, T., Wagner, F., Sher, N. and Yanai, I. (2012). CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. Cell Rep. 2, 666-673.
    • (2012) Cell Rep , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 5
    • 79956195991 scopus 로고    scopus 로고
    • Analysis and simulation of gene expression profiles in pure and mixed cell populations
    • Hebenstreit, D. and Teichmann, S. A. (2011). Analysis and simulation of gene expression profiles in pure and mixed cell populations. Phys. Biol. 8, 035013.
    • (2011) Phys. Biol , vol.8 , pp. 035013
    • Hebenstreit, D.1    Teichmann, S.A.2
  • 6
    • 0001050402 scopus 로고
    • The traveling-salesman problem and minimum spanning trees
    • Held, M. and Karp, R. M. (1970). The traveling-salesman problem and minimum spanning trees. Oper. Res. 18, 1138-1162.
    • (1970) Oper. Res , vol.18 , pp. 1138-1162
    • Held, M.1    Karp, R.M.2
  • 8
    • 84894107026 scopus 로고    scopus 로고
    • Open traveling salesman problem - genetic algorithm
    • Kirk, J. (2008). Open traveling salesman problem - genetic algorithm. MATLAB 7.12 (R2011a).
    • (2008) MATLAB , vol.7 , Issue.12
    • Kirk, J.1
  • 9
  • 10
    • 84860903672 scopus 로고    scopus 로고
    • Developmental milestones punctuate gene expression in the Caenorhabditis embryo
    • Levin, M., Hashimshony, T., Wagner, F. and Yanai, I. (2012). Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev. Cell 22, 1101-1108.
    • (2012) Dev. Cell , vol.22 , pp. 1101-1108
    • Levin, M.1    Hashimshony, T.2    Wagner, F.3    Yanai, I.4
  • 11
    • 79952256180 scopus 로고    scopus 로고
    • Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq
    • Lott, S. E., Villalta, J. E., Schroth, G. P., Luo, S., Tonkin, L. A. and Eisen, M. B. (2011). Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. PLoS Biol. 9, e1000590.
    • (2011) PLoS Biol , vol.9
    • Lott, S.E.1    Villalta, J.E.2    Schroth, G.P.3    Luo, S.4    Tonkin, L.A.5    Eisen, M.B.6
  • 12
    • 19044391501 scopus 로고
    • The Euclidean travelling salesman problem is NP- complete
    • Papadimitriou, C. H. (1977). The Euclidean travelling salesman problem is NP- complete. Theor. Comput. Sci. 4, 237-244.
    • (1977) Theor. Comput. Sci , vol.4 , pp. 237-244
    • Papadimitriou, C.H.1
  • 14
    • 84882455458 scopus 로고    scopus 로고
    • Single-cell sequencing-based technologies will revolutionize whole-organism science
    • Shapiro, E., Biezuner, T. and Linnarsson, S. (2013). Single-cell sequencing-based technologies will revolutionize whole-organism science. Nat. Rev. Genet. 14, 618-630.
    • (2013) Nat. Rev. Genet , vol.14 , pp. 618-630
    • Shapiro, E.1    Biezuner, T.2    Linnarsson, S.3
  • 16
    • 79954452308 scopus 로고    scopus 로고
    • Mapping gene expression in two Xenopus species: Evolutionary constraints and developmental flexibility
    • Yanai, I., Peshkin, L., Jorgensen, P. and Kirschner, M. W. (2011). Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility. Dev. Cell 20, 483-496.
    • (2011) Dev. Cell , vol.20 , pp. 483-496
    • Yanai, I.1    Peshkin, L.2    Jorgensen, P.3    Kirschner, M.W.4
  • 17
    • 84877898313 scopus 로고    scopus 로고
    • Deep mRNA sequencing analysis to capture the transcriptome landscape of zebrafish embryos and larvae
    • Yang, H., Zhou, Y., Gu, J., Xie, S., Xu, Y., Zhu, G., Wang, L., Huang, J., Ma, H. and Yao, J. (2013). Deep mRNA sequencing analysis to capture the transcriptome landscape of zebrafish embryos and larvae. PLoS ONE 8, e64058.
    • (2013) PLoS ONE , vol.8
    • Yang, H.1    Zhou, Y.2    Gu, J.3    Xie, S.4    Xu, Y.5    Zhu, G.6    Wang, L.7    Huang, J.8    Ma, H.9    Yao, J.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.