Predominance of cluster I Clostridium in hydrogen fermentation of galactose seeded with various heat-treated anaerobic sludges

Bioresource Technology

Volumn 157, Issue , 2014, Pages 98-106

  Park, Jeong Hoon ^a,b   Lee, Sang Hoon ^a   Yoon, Jeong Jun ^b   Kim, Sang Hyoun ^c   Park, Hee Deung ^a  

^a Korea University   (South Korea)

^b Korea Institute of Industrial Technology   (South Korea)

^c Daegu University   (South Korea)

Author keywords

Biohydrogen; Clostridium; Galactose; Marine red algae; Pyrosequencing

Indexed keywords

ALGAE; CLOSTRIDIUM; FERMENTATION; FERMENTERS; HYDROGEN; HYDROGEN PRODUCTION; POLYMERASE CHAIN REACTION;

ANAEROBIC SLUDGE; BACTERIAL POPULATION; BIO-HYDROGEN; GALACTOSE; HYDROGEN FERMENTATION; HYDROGEN PRODUCTION RATE; MARINE RED ALGA; PYROSEQUENCING;

ANAEROBIC DIGESTION;

BUTYRIC ACID; GALACTOSE; HYDROGEN; RIBOSOME DNA; RNA 16S; SEWAGE;

ANOXIC CONDITIONS; CLUSTER ANALYSIS; FERMENTATION; HYDROGEN; RED ALGA; SLUDGE; TEMPERATURE EFFECT;

ANAEROBIC DIGESTION; ARTICLE; BIOREACTOR; CLOSTRIDIUM; FERMENTATION; FIRMICUTES; HEAT TREATMENT; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PYROSEQUENCING; SLUDGE; WASTE WATER MANAGEMENT; ANAEROBIC GROWTH; GENETICS; HEAT; METABOLISM; MICROBIOLOGY; PHYLOGENY; SEWAGE; STATISTICAL MODEL;

ANAEROBIOSIS; BIOREACTORS; CLOSTRIDIUM; DNA, RIBOSOMAL; FERMENTATION; GALACTOSE; HOT TEMPERATURE; HYDROGEN; LINEAR MODELS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEWAGE;

EID: 84894041867     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2014.01.081     Document Type: Article

References (35)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 1990, 215(3):403-410.
2. Bahl H., Durre P. Clostridia: Biotechnology and Medical Applications 2001, John Wiley & Sons.
3. Calusinska M., Happe T., Joris B., Wilmotte A. The surprising diversity of clostridial hydrogenases: a comparative genomic perspective. Microbiology 2010, 156(6):1575-1588.
4. Collins M.D., Facklam R.R., Rodrigues U.M., Ruoff K.L. Phylogenetic analysis of some Aerococcus-like organisms from clinical sources: Description of Helcococcus kunzii gen. nov., sp. nov. Int. J. Syst. Bacteriol. 1993, 43(3):425-429.
5. Frey P.A. The Leloir pathway: a mechanistic imperative for three enzymes to change the stereochemical configuration of a single carbon in galactose. FASEB J. 1996, 10(4):461-470.
6. Gaffron H., Rubin J. Fermentative and photochemical production of hydrogen in algae. J. General Physiol. 1942, 26(2):219-240.
7. Hallenbeck P.C., Ghosh D. Advances in fermentative biohydrogen production: the way forward?. Trends Biotechnol. 2009, 27(5):287-297.
8. Hawkes F.R., Hussy I., Kyazze G., Dinsdale R., Hawkes D.L. Continuous dark fermentative hydrogen production by mesophilic microflora: principles and progress. Int. J. Hydrogen Energy 2007, 32:172-184.
9. Hung C.-H., Lee K.-S., Cheng L.-H., Huang Y.-H., Lin P.-J., Chang J.-S. Quantitative analysis of a high-rate hydrogen-producing microbial community in anaerobic agitated granular sludge bed bioreactors using glucose as substrate. Appl. Microbiol. Biotechnol. 2007, 75(3):693-701.
10. 2-producing reactor using organic wastes as a feedstock. Int. J. Hydrogen Energy 2012, 37(10):8330-8337.
11. John R.P., Anisha G.S., Nampoothiri K.M., Pandey A. Micro and macroalgal biomass: a renewable source for bioethanol. Bioresour. Technol. 2011, 102(1):186-193.
12. Jol C.N., Neiss T.G., Penninkhof B., Rudolph B., De Ruiter G.A. A novel high-performance anion-exchange chromatographic method for the analysis of carrageenans and agars containing 3,6-anhydrogalactose. Anal. Biochem. 1999, 268(2):213-222.
13. Kanazawa N., Urushigawa Y., Yato Y. Total RNA concentration as an index of microbial activity and oxygen supply in an oxidation ditch. J. Biosci. Bioeng. 2005, 99(6):555-561.
14. Kim D.-H., Han S.-K., Kim S.-H., Shin H.-S. Effect of gas sparging on continuous fermentative hydrogen production. Int. J. Hydrogen Energy 2006, 31(15):2158-2169.
15. Kim S.-H., Han S.-K., Shin H.-S. Effect of substrate concentration on hydrogen production and 16S rDNA-based analysis of the microbial community in a continuous fermenter. Process Biochem. 2006, 41(1):199-207.
16. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16(2):111-120.
17. Kumar S., Nei M., Dudley J., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9(4):299-306.
18. Lee S.-H., Cho J.-C. Group-specific PCR primers for the phylum Acidobacteria designed based on the comparative analysis of 16S rRNA gene sequences. J. Microbiol. Methods 2011, 86(2):195-203.
19. Lee M.-J., Song J.-H., Hwang S.-J. Effects of acid pre-treatment on bio-hydrogen production and microbial communities during dark fermentation. Bioresour. Technol. 2009, 100(3):1491-1493.
20. Lee S.-H., Kang H.-J., Lee Y.H., Lee T.J., Han K., Choi Y., Park H.-D. Monitoring bacterial community structure and variability in time scale in full-scale anaerobic digesters. J. Environ. Monit. 2012, 14(7):1893-1905.
21. 2-producing indigenous bacteria: feasibility and kinetic studies. Water Res. 2008, 42(4-5):827-842.
22. Morimoto M., Atsuko M., Atif A.A.Y., Ngan M.A., Fakhru'l-Razi A., Iyuke S.E., Bakir A.M. Biological production of hydrogen from glucose by natural anaerobic microflora. Int. J. Hydrogen Energy 2004, 29:709-713.
23. Pan C.-M., Fan Y.-T., Zhao P., Hou H.-W. Fermentative hydrogen production by the newly isolated Clostridium beijerinckii Fanp3. Int. J. Hydrogen Energy 2008, 33(20):5383-5391.
24. Panagiotou G., Olsson L. Effect of compounds released during pretreatment of wheat straw on microbial growth and enzymatic hydrolysis rates. Biotechnol. Bioeng. 2007, 96(2):250-258.
25. Park J.-H., Yoon J.-J., Park H.-D., Kim Y.J., Lim D.J., Kim S.-H. Feasibility of biohydrogen production from Gelidium amansii. Int. J. Hydrogen Energy 2011, 36(21):13997-14003.
26. Park J.-H., Hong J.-Y., Jang H.-C., Oh S.-G., Kim S.-H., Yoon J.-J., Kim Y.-J. Use of Gelidium amansii as a promising resource for bioethanol: a practical approach for continuous dilute-acid hydrolysis and fermentation. Bioresour. Technol. 2012, 108:83-88.
27. Rosales-Colunga L.M., Razo-Flores E., De León Rodríguez A. Fermentation of lactose and its constituent sugars by Escherichia coli WDHL: impact on hydrogen production. Bioresour. Technol. 2012, 111:180-184.
28. Ryan K.J., Ray C.G. Sherris Medical Microbiology 2010, McGraw Hill Medical.
29. Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., Sahl J.W., Stres B., Thallinger G.G., Van Horn D.J., Weber C.F. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 2009, 75(23):7537-7541.
30. Servinsky M.D., Kiel J.T., Dupuy N.F., Sund C.J. Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum. Microbiology 2010, 156(11):3478-3491.
31. Singh A., Olsen S.I. A critical review of biochemical conversion, sustainability and life cycle assessment of algal biofuels. Appl. Energy 2011, 88(10):3548-3555.
32. Šoštarič M., Klinar D., Bricelj M., Golob J., Berovič M., Likozar B. Growth, lipid extraction and thermal degradation of the microalga Chlorella vulgaris. New Biotechnol. 2012, 29(3):325-331.
33. Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73(16):5261-5267.
34. Wang X., Hoefel D., Saint C.P., Monis P.T., Jin B. The isolation and microbial community analysis of hydrogen producing bacteria from activated sludge. J. Appl. Microbiol. 2007, 103(5):1415-1423.
35. Zwietering M.H., Jongenburger I.l., Rombouts F.M., Van't Riet K. Modeling of the bacterial growth curve. Appl. Environ. Microbiol. 1990, 56(6):1875-1881.