Genetic diversity in the G protein gene of group A human respiratory syncytial viruses circulating in Riyadh, Saudi Arabia

Archives of Virology

Volumn 159, Issue 1, 2014, Pages 73-81

  Almajhdi, Fahad N ^a   Farrag, Mohamed A ^a   Amer, Haitham M ^a,b  

^a KING SAUD UNIVERSITY   (Saudi Arabia)

^b Cairo University   (Egypt)

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN RESPIRATORY SYNCYTIAL VIRUS; HYDRANGEA RINGSPOT VIRUS; RESPIRATORY SYNCYTIAL VIRUS;

VIRUS ENVELOPE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; FEMALE; GENETIC VARIABILITY; GENETICS; HUMAN; INFANT; ISOLATION AND PURIFICATION; MALE; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY SYNCYTIAL VIRUS INFECTION; SAUDI ARABIA; SEASON; SEQUENCE ALIGNMENT; VIROLOGY;

AMINO ACID SEQUENCE; CHILD, PRESCHOOL; FEMALE; GENETIC VARIATION; HUMANS; INFANT; MALE; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; RESPIRATORY SYNCYTIAL VIRUS, HUMAN; SAUDI ARABIA; SEASONS; SEQUENCE ALIGNMENT; VIRAL ENVELOPE PROTEINS;

EID: 84893788087     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1792-6     Document Type: Article

References (44)

1. Collins PL, Crowe JE (2007) Respiratory syncytial virus and metapneumovirus. In: Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE (eds) Fields virology, 5th edn. Lippincott Williams and Wilkins, Philadelphia, pp 1601-1646.
2. Glezen WP, Taber LH, Frank AL, Juliuss AK (1986) Risk of primary infection and reinfection with respiratory syncytial virus. Am J Dis Child 140: 543-546.
3. Falsey AR, Walsh EE (2000) Respiratory syncytial virus infection in adults. Clin Microbiol Rev 13: 371-384.
4. King AM, Adams MJ, Carstens EB, Lefkowitz EJ (2012) Virus taxonomy and nomenclature of viruses. Ninth report of the International Committee on taxonomy of viruses. Elsevier-Academic Press, Amsterdam.
5. Anderson LJ, Hierholzer JC, Tsou C, Hendry RM, Fernie BF, Stone Y, McIntosh K (1985) Antigenic characterization of respiratory syncytial virus strains with monoclonal antibodies. J Infect Dis 151: 626-633.
6. Sullender W (2000) Respiratory syncytial virus genetic and antigenic diversity. Clin Microbiol Rev 13: 1-15.
7. Carballal G, Videla C, Sequeira MD, Mistchenko A, Requeijo PV, Arbiza J (2000) Respiratory syncytial virus: changes in prevalence of subgroups A and B among Argentinian children, 1990-1996. J Med Virol 61: 275-279.
8. Zhang Y, Xu W, Shen K, Xie Z, Sun L, Lu Q, Liu C, Liang G, Beeler JA, Anderson LJ (2007) Genetic variability of group A and B human respiratory syncytial viruses isolated from 3 provinces in China. Arch Virol 152: 1425-1434.
9. Peret TC, Hall CB, Hammond GW, Piedra PA, Storch GA, Sullender WM, Tsou C, Anderson LJ (2000) Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J Infect Dis 181: 1891-1896.
10. Venter M, Madhi SA, Tiemessen CT, Schoub BD (2001) Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: identification of new subgroup A and B genotypes. J Gen Virol 82: 2117-2424.
11. Baek YH, Choi EH, Song MS, Pascua PN, Kwon HI, Park SJ, Lee JH, Woo SI, Ahn BH, Han HS, Hahn YS, Shin KS, Jang HL, Kim SY, Choi YK (2012) Prevalence and genetic characterization of respiratory syncytial virus (RSV) in hospitalized children in Korea. Arch Virol 157: 1039-1050.
12. Eshaghi A, Duvvuri VR, Lai R, Nadarajah JT, Li A, Patel SN, Low DE, Gubbay JB (2012) Genetic variability of human respiratory syncytial virus A strains circulating in Ontario: a novel genotype with a 72 nucleotide G gene duplication. PLoS One 7: e32807.
13. Shobugawa Y, Saito R, Sano Y, Zaraket H, Suzuki Y, Kumaki A, Dapat I, Oguma T, Yamaguchi M, Suzuki H (2009) Emerging genotypes of human respiratory syncytial virus subgroup A among patients in Japan. J Clin Microbiol 47: 2475-2482.
14. Choi EH, Lee HJ (2000) Genetic diversity and molecular epidemiology of the G protein of subgroups A and B of respiratory syncytial viruses isolated over 9 consecutive epidemics in Korea. J Infect Dis 181: 1547-1556.
15. Levine S, Klaiber-Franco R, Paradiso PR (1987) Demonstration that glycoprotein G is the attachment protein of respiratory syncytial virus. J Gen Virol 68: 2521-2524.
16. Johnson PR, Spriggs MK, Olmsted RA, Collins PL (1987) The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: extensive sequence divergence between antigenically related proteins. Proc Natl Acad Sci USA 84: 5625-5629.
17. Kuroiwa Y, Nagai K, Okita L, Yui I, Kase T, Nakayama T, Tsutsumi H (2005) A phylogenetic study of human respiratory syncytial viruses group A and B strains isolated in two cities in Japan from 1980-2002. J Med Virol 76: 241-247.
18. Al-Hajjar S, Akhter J, Al-Jumaah S, Qadri H (1998) Respiratory viruses in children attending a major referral centre in Saudi Arabia. Ann Trop Paediatr 18: 87-92.
19. Al-Majhdi FN, Al-Jarallah A, Elaeed M, Latif A, Gissmann L, Amer HM (2009) Prevalence of respiratory syncytial virus infection in Riyadh during the winter season 2007-2008 and different risk factors impact. Inter J Virol 5: 154-163.
20. Al-Shehri MA, Sadeq A, Quli K (2005) Bronchiolitis in Abha, Southwest Saudi Arabia: viral etiology and predictors for hospital admission. West Afr J Med 24: 299-304.
21. Bakir TM, Halawani M, Ramia S (1998) Viral aetiology and epidemiology of acute respiratory infections in hospitalized Saudi children. J Trop Pediatr 44: 100-103.
22. Meqdam M, Subaih SH (2006) Rapid detection and clinical features of infants and young children with acute lower respiratory tract infection due to respiratory syncytial virus. FEMS Immunol Med Microbiol 47: 129-133.
23. Shier MK, Badr MA (2005) Respiratory syncytial virus infection in patients visiting King Khaled university hospital. Minoufia Med J 18: 11-18.
24. Cane P, Pringle C (1991) Respiratory syncytial virus heterogeneity during an epidemic: analysis by limited nucleotide sequencing (SH gene) and restriction mapping (N gene). J Gen Virol 72: 349-357.
25. Yamada A, Lam L-Y, Tam JS (2004) Typing and subtyping of influenza viruses and respiratory syncytial viruses by multiplex RT-PCR. Int Congr Ser 1263: 381-385.
26. Hughes JH, Daniel RM, Vincent V (1988) Detection of respiratory syncytial virus in clinical specimens by viral culture, direct and indirect immunofluorescence, and enzyme immunoassay. J Clin Microbiol 26: 588-591.
27. Rossiter PB, Jessett DM, Taylor WP (1985) Microneutralisation systems for use with different strains of peste des petits ruminants virus and rinderpest virus. Trop Anim Health Prod 17: 75-81.
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
29. Cane P, Pringle C (1995) Evolution of subgroup A respiratory syncytial virus: evidence for progressive accumulation of amino acid changes in the attachment protein. J Virol 69: 2918-2925.
30. Peret TC, Hall CB, Schnabel KC, Golub JA, Anderson LJ (1998) Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J Gen Virol 79: 2221-2229.
31. Faghihloo E, Salimi V, Rezaeil F, Naseril M, Mamishi S, Mahmoodi M, Mokhtari-Azad T (2011) Genetic diversity in the G protein gene of human respiratory syncytial virus among Iranian children with acute respiratory symptoms. Iran J Pediatr 21: 58-64.
32. Meqdam MM, Nasrallah GK (2000) Enhanced detection of respiratory syncytial virus by shell vial in children hospitalised with respiratory illnesses in northern Jordan. J Med Virol 62: 518-523.
33. Fattouh AM, Mansi YA, El-Anany MG, El-Kholy AA, El-Karaksy HM (2011) Acute lower respiratory tract infection due to respiratory syncytial virus in a group of Egyptian children under 5 years of age. Ital J Pediatr 37: 14.
34. Rajala MS, Sullender WM, Prasad AK, Dar L, Broor S (2003) Genetic variability among Group A and B respiratory syncytial virus isolates from a large referral hospital in New Delhi, India. J Clin Microbiol 41: 2311-2316.
35. Hall CB, Walsh EE, Schnabel KC, Long CE, McConnochie KM, Hildreth SW, Anderson LJ (1990) Occurrence of groups A and B of respiratory syncytial virus over 15 years: associated epidemiologic and clinical characteristics in hospitalized and ambulatory children. J Infect Dis 162: 1283-1290.
36. Forcic D, Ivancic-Jelecki J, Mlinaric-Galinovic G, Vojnovic G, Babic-Erceg A, Tabain I (2012) A study of the genetic variability of human respiratory syncytial virus in Croatia, 2006-2008. J Med Virol 84: 1985-1992.
37. Nakamura M, Itokazu K, Taira K, Kawaki T, Kudaka J, Nidaira M, Okano S, Koja Y, Tamanaha K, Kimura H, Noda M (2009) Genotypic and phylogenetic analysis of the G gene of respiratory syncytial virus isolates in Okinawa, Japan, 2008. Jpn J Infect Dis 62: 326-327.
38. Ostlund MR, Lindell AT, Stenler S, Riedel HM, Wirgart BZ, Grillner L (2008) Molecular epidemiology and genetic variability of respiratory syncytial virus (RSV) in Stockholm, 2002-2003. J Med Virol 80: 159-167.
39. Rebuffo-Scheer C, Bose M, He J, Khaja S, Ulatowski M, Beck ET, Fan J, Kumar S, Nelson MI, Henrickson KJ (2011) Whole genome sequencing and evolutionary analysis of human respiratory syncytial virus A and B from Milwaukee, WI 1998-2010. PLoS One 6: e25468.
40. Viegas M, Mistchenko AS (2005) Molecular epidemiology of human respiratory syncytial virus subgroup A over a six-year period (1999-2004) in Argentina. J Med Virol 77: 302-310.
41. Plotnicky-Gilquin H, Goetsch L, Huss T, Champion T, Beck A, Haeuw JF, Nguyen TN, Bonnefoy JY, Corvaia N, Power UF (1999) Identification of multiple protective epitopes (protectopes) in the central conserved domain of a prototype human respiratory syncytial virus G protein. J Virol 73: 5637-5645.
42. Rueda P, Delgado T, Portela A, Melero JA, Garcia-Barreno B (1991) Premature stop codons in the G glycoprotein of human respiratory syncytial viruses resistant to neutralization by monoclonal antibodies. J Virol 65: 3374-3378.
43. Melero JA, Garcia-Barreno B, Martinez I, Pringle CR, Cane PA (1997) Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein. J Gen Virol 78: 2411-2418.
44. Palomo CP, Cane A, Melero JA (2000) Evaluation of the antibody specificities of human convalescent-phase sera against the attachment (G) protein of human respiratory syncytial virus: influence of strain variation and carbohydrate side chains. J Med Virol 60: 468-474.