메뉴 건너뛰기




Volumn 99, Issue , 2014, Pages 83-91

Complete mitochondrial genomes elucidate phylogenetic relationships of the deep-sea octocoral families Coralliidae and Paragorgiidae

Author keywords

Corallium; Gene rearrangement; Mitochondrial genome; Molecular phylogenetics; Octocoral phylogeny; Paragorgia; Pleurocorallium; Soft corals

Indexed keywords

CORALLIUM; GENE REARRANGEMENT; MITOCHONDRIAL GENOMES; MOLECULAR PHYLOGENETICS; OCTOCORAL PHYLOGENY; PARAGORGIA; PLEUROCORALLIUM; SOFT CORALS;

EID: 84893786061     PISSN: 09670645     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dsr2.2013.06.001     Document Type: Article
Times cited : (26)

References (56)
  • 1
    • 84893732825 scopus 로고    scopus 로고
    • A time calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history. BioMed Central 12
    • Ardila N.E., Giribet G., Sanchez J.A. A time calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history. BioMed Central 12. PLoS ONE 2012, 7:246.
    • (2012) PLoS ONE , vol.7 , pp. 246
    • Ardila, N.E.1    Giribet, G.2    Sanchez, J.A.3
  • 2
    • 65949106438 scopus 로고    scopus 로고
    • Exploration for deep-sea corals on North Pacific seamounts and islands
    • Baco A.R. Exploration for deep-sea corals on North Pacific seamounts and islands. Oceanography 2007, 20:108-117.
    • (2007) Oceanography , vol.20 , pp. 108-117
    • Baco, A.R.1
  • 3
    • 84866946855 scopus 로고    scopus 로고
    • Comparing molecular variation to morphological species designations in the deep-sea coral Narella reveals new insights into seamount coral ranges
    • Baco A.R., Cairns S.D. Comparing molecular variation to morphological species designations in the deep-sea coral Narella reveals new insights into seamount coral ranges. PLoS ONE 2012, 7:45555.
    • (2012) PLoS ONE , vol.7 , pp. 45555
    • Baco, A.R.1    Cairns, S.D.2
  • 5
    • 0038661035 scopus 로고    scopus 로고
    • A new genus of the scleraxonian family Coralliidae (Octocorallia: Gorgonacea)
    • Bayer F.M., Cairns S.D. A new genus of the scleraxonian family Coralliidae (Octocorallia: Gorgonacea). Proc. Biol. Soc. Wash. 2003, 116:222.
    • (2003) Proc. Biol. Soc. Wash. , vol.116 , pp. 222
    • Bayer, F.M.1    Cairns, S.D.2
  • 6
    • 0006062793 scopus 로고
    • The Genus Corallium (Gorgonacea: Scleraxonia) in the Western North Atlantic Ocean
    • Bayer F.M. The Genus Corallium (Gorgonacea: Scleraxonia) in the Western North Atlantic Ocean. Bull. Mar. Sci. 1964, 14:465-478.
    • (1964) Bull. Mar. Sci. , vol.14 , pp. 465-478
    • Bayer, F.M.1
  • 7
    • 0032417005 scopus 로고    scopus 로고
    • Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals
    • Beaton M., Roger A., Cavalier-Smith T. Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals. J. Mol. Evol. 1998, 47:697-708.
    • (1998) J. Mol. Evol. , vol.47 , pp. 697-708
    • Beaton, M.1    Roger, A.2    Cavalier-Smith, T.3
  • 8
    • 0035123385 scopus 로고    scopus 로고
    • Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences
    • Berntson E.A., Bayer F.M., McArthur A.G., France S.C. Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences. Mar. Biol. 2001, 138:235.
    • (2001) Mar. Biol. , vol.138 , pp. 235
    • Berntson, E.A.1    Bayer, F.M.2    McArthur, A.G.3    France, S.C.4
  • 9
    • 84873141025 scopus 로고    scopus 로고
    • The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes
    • Brockman S.A., McFadden C.S. The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes. Genome Biol. Evol 2012, 4:994-1006.
    • (2012) Genome Biol. Evol , vol.4 , pp. 994-1006
    • Brockman, S.A.1    McFadden, C.S.2
  • 10
    • 50249152906 scopus 로고    scopus 로고
    • The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals
    • Brugler M., France S. The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals. J. Mol. Evol. 2008, 67:125-136.
    • (2008) J. Mol. Evol. , vol.67 , pp. 125-136
    • Brugler, M.1    France, S.2
  • 12
    • 67649656112 scopus 로고    scopus 로고
    • Effect of deepwater trawling on the macro-invertebrate assemblages of seamounts on the Chatham Rise, New Zealand
    • Clark M.R., Rowden A.A. Effect of deepwater trawling on the macro-invertebrate assemblages of seamounts on the Chatham Rise, New Zealand. Deep Sea Res. Part I: Oceanogr. Res. Pap. 2009, 56:1540-1554.
    • (2009) Deep Sea Res. Part I: Oceanogr. Res. Pap. , vol.56 , pp. 1540-1554
    • Clark, M.R.1    Rowden, A.A.2
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 0000377318 scopus 로고    scopus 로고
    • Analysis of variation in mitochondrial DNA sequences (ND3, ND4L, MSH) among Octocorallia (=Alcyonaria) (Cnidaria: Anthozoa)
    • France S.C., Hoover L.L. Analysis of variation in mitochondrial DNA sequences (ND3, ND4L, MSH) among Octocorallia (=Alcyonaria) (Cnidaria: Anthozoa). Bull. Biol. Soc. Wash. 2001, 110-118.
    • (2001) Bull. Biol. Soc. Wash. , pp. 110-118
    • France, S.C.1    Hoover, L.L.2
  • 16
    • 14844313275 scopus 로고    scopus 로고
    • Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree
    • Gadagkar S.R., Rosenberg M.S., Kumar S. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. J. Exp. Zool. 2005, 304B:64-74.
    • (2005) J. Exp. Zool. , vol.304 B , pp. 64-74
    • Gadagkar, S.R.1    Rosenberg, M.S.2    Kumar, S.3
  • 17
    • 0026458294 scopus 로고
    • Anomalous abundances of deep-sea fauna on a rocky bottom exposed to strong currents
    • Genin A., Paull C.K., Dilon W.P. Anomalous abundances of deep-sea fauna on a rocky bottom exposed to strong currents. Deep-Sea Res. 1992, 39:293-302.
    • (1992) Deep-Sea Res. , vol.39 , pp. 293-302
    • Genin, A.1    Paull, C.K.2    Dilon, W.P.3
  • 18
    • 0022899421 scopus 로고
    • Corals on seamount peaks provide evidence of current acceleration over deep-sea topography
    • Genin A., Dayton P.K., Lonsdale P.F., Spiess F.N. Corals on seamount peaks provide evidence of current acceleration over deep-sea topography. Nature 1986, 322:59-61.
    • (1986) Nature , vol.322 , pp. 59-61
    • Genin, A.1    Dayton, P.K.2    Lonsdale, P.F.3    Spiess, F.N.4
  • 19
    • 0000743367 scopus 로고
    • Notes on the arrangement of sponges, with the description of some new genera
    • Gray J.E. Notes on the arrangement of sponges, with the description of some new genera. Proc. Zool. Soc. London 1867, 492-558.
    • (1867) Proc. Zool. Soc. London , pp. 492-558
    • Gray, J.E.1
  • 20
    • 0242715758 scopus 로고
    • Recruitment limitation of a deep benthic hard-bottom octocoral population in the Hawaiian Islands
    • Grigg R.W. Recruitment limitation of a deep benthic hard-bottom octocoral population in the Hawaiian Islands. Mar. Ecol. Prog. Ser. 1988, 45:121-126.
    • (1988) Mar. Ecol. Prog. Ser. , vol.45 , pp. 121-126
    • Grigg, R.W.1
  • 21
    • 33646227808 scopus 로고    scopus 로고
    • Will human-induced changes in seawater chemistry alter the distribution of deep-sea scleractinian coralsα
    • Guinotte J.M., Orr J., Cairns S., Freiwald A., Morgan L., George R. Will human-induced changes in seawater chemistry alter the distribution of deep-sea scleractinian coralsα. Front. Ecol. Environ. 2006, 4:141-146.
    • (2006) Front. Ecol. Environ. , vol.4 , pp. 141-146
    • Guinotte, J.M.1    Orr, J.2    Cairns, S.3    Freiwald, A.4    Morgan, L.5    George, R.6
  • 22
    • 0025247294 scopus 로고
    • Variation in megafaunal assemblages on the continental margin south of New England
    • Hecker B. Variation in megafaunal assemblages on the continental margin south of New England. Deep Sea Res. Part A: Oceanogr. Res. Pap. 1990, 37:37-57.
    • (1990) Deep Sea Res. Part A: Oceanogr. Res. Pap. , vol.37 , pp. 37-57
    • Hecker, B.1
  • 23
    • 84855982166 scopus 로고    scopus 로고
    • Cobalt-rich ferromanganese crusts: global distribution, composition, origin and research activities
    • Hein J.R. Cobalt-rich ferromanganese crusts: global distribution, composition, origin and research activities. ISA Tech. Study 2002, 2:36-89.
    • (2002) ISA Tech. Study , vol.2 , pp. 36-89
    • Hein, J.R.1
  • 24
    • 70449392271 scopus 로고    scopus 로고
    • Seamount characteristics and mine-site model applied to exploration- and mining-lease-block selection for cobalt-rich ferromanganese crusts
    • Hein J.R., Conrad T.A., Dunham R.E. Seamount characteristics and mine-site model applied to exploration- and mining-lease-block selection for cobalt-rich ferromanganese crusts. Mar. Georesour. Geotechnol. 2009, 27:160-176.
    • (2009) Mar. Georesour. Geotechnol. , vol.27 , pp. 160-176
    • Hein, J.R.1    Conrad, T.A.2    Dunham, R.E.3
  • 25
    • 77149156309 scopus 로고    scopus 로고
    • Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species
    • Herrera S., Baco A., Sãnchez J.A. Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species. Mol. Phylogenet. Evol. 2010, 55:123-135.
    • (2010) Mol. Phylogenet. Evol. , vol.55 , pp. 123-135
    • Herrera, S.1    Baco, A.2    Sãnchez, J.A.3
  • 26
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 27
    • 0028179028 scopus 로고
    • Organisms as ecosystem engineers
    • Jones C.G., Lawton J.H., Shachak M. Organisms as ecosystem engineers. Oikos 1994, 69:373-386.
    • (1994) Oikos , vol.69 , pp. 373-386
    • Jones, C.G.1    Lawton, J.H.2    Shachak, M.3
  • 29
    • 0346073186 scopus 로고    scopus 로고
    • Coral (Primnoa) impacted by fishing gear in the Gulf of Alaska. In: Wilson, J.H.M., Hall, J., Gass, S.E., Kenchington, E.L.R., Butler, M., Doherty, P. (Eds.), Proceedings of the First International Symposium on Deep-Sea Corals. Ecology Action Centre, Halifax
    • Krieger, K.J., 2001. Coral (Primnoa) impacted by fishing gear in the Gulf of Alaska. In: Wilson, J.H.M., Hall, J., Gass, S.E., Kenchington, E.L.R., Butler, M., Doherty, P. (Eds.), Proceedings of the First International Symposium on Deep-Sea Corals. Ecology Action Centre, Halifax, pp. 106-116.
    • (2001) , pp. 106-116
    • Krieger, K.J.1
  • 30
    • 84893723497 scopus 로고    scopus 로고
    • Predicting Habitat for two Species of Deep-water Coral on the Canadian Atlantic Continental Shelf and Slope
    • Leverette, T.L., Metaxas, A., 2005. Predicting Habitat for two Species of Deep-water Coral on the Canadian Atlantic Continental Shelf and Slope, pp. 467-479.
    • (2005) , pp. 467-479
    • Leverette, T.L.1    Metaxas, A.2
  • 31
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
    • Lowe T.M., Eddy S.R. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence. Nucleic Acids Res. 1997, 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 33
    • 77956296227 scopus 로고    scopus 로고
    • Molecular phylogenetic insights into the evolution of octocorallia: a review
    • McFadden C.S., Sanchez J.A., France S.C. Molecular phylogenetic insights into the evolution of octocorallia: a review. Integrative Comp. Biol. 2010, 50:389-410.
    • (2010) Integrative Comp. Biol. , vol.50 , pp. 389-410
    • McFadden, C.S.1    Sanchez, J.A.2    France, S.C.3
  • 34
    • 33750948048 scopus 로고    scopus 로고
    • A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences
    • McFadden C.S., France S.C., Sanchez J.A., Alderslade P. A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences. Mol. Phylogenet. Evol. 2006, 41:513-527.
    • (2006) Mol. Phylogenet. Evol. , vol.41 , pp. 513-527
    • McFadden, C.S.1    France, S.C.2    Sanchez, J.A.3    Alderslade, P.4
  • 36
    • 0025679687 scopus 로고
    • Biozonation of deep-water lithoherms and associated hardgrounds in the northeastern Straits of Florida
    • Messing C.G., Neumann A.C., Lang J.C. Biozonation of deep-water lithoherms and associated hardgrounds in the northeastern Straits of Florida. Palaios 1990, 5:15-33.
    • (1990) Palaios , vol.5 , pp. 15-33
    • Messing, C.G.1    Neumann, A.C.2    Lang, J.C.3
  • 37
    • 77956285690 scopus 로고    scopus 로고
    • Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
    • 2010 pdb.prot5448
    • Meyer, M., Kircher, M., 2010. Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harbor Protocols. 2010, pdb.prot5448.
    • (2010) Cold Spring Harbor Protocols
    • Meyer, M.1    Kircher, M.2
  • 38
    • 84893717683 scopus 로고    scopus 로고
    • Status of Deep Sea Corals in US Waters. Marine Conservation Biology Institute, Bellevue, Washington.
    • Morgan, L.E., Tsao, C.-F., Guinotte, J.M., 2006. Status of Deep Sea Corals in US Waters. Marine Conservation Biology Institute, Bellevue, Washington.
    • (2006)
    • Morgan, L.E.1    Tsao, C.-F.2    Guinotte, J.M.3
  • 39
    • 84893761825 scopus 로고    scopus 로고
    • Deep-water Corals and their Habitats in the Gully, a Submarine Canyon off Atlantic Canada
    • Mortensen, P.B., Buhl-Mortensen, L., 2005. Deep-water Corals and their Habitats in the Gully, a Submarine Canyon off Atlantic Canada, pp. 247-277.
    • (2005) , pp. 247-277
    • Mortensen, P.B.1    Buhl-Mortensen, L.2
  • 40
    • 80051831468 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Dendronephthya gigantea (Anthozoa: Octocorallia: Nephtheidae)
    • Park E., Kim B., Won Y.-J. The complete mitochondrial genome of Dendronephthya gigantea (Anthozoa: Octocorallia: Nephtheidae). Korean J. Syst. Zool. 2010, 26:197-201.
    • (2010) Korean J. Syst. Zool. , vol.26 , pp. 197-201
    • Park, E.1    Kim, B.2    Won, Y.-J.3
  • 41
    • 83655163700 scopus 로고    scopus 로고
    • Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record
    • Park E., Hwang D., Lee J., Song J., Seo T., Won Y. Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record. Mol. Phylogenet. Evol. 2011, 62:329-345.
    • (2011) Mol. Phylogenet. Evol. , vol.62 , pp. 329-345
    • Park, E.1    Hwang, D.2    Lee, J.3    Song, J.4    Seo, T.5    Won, Y.6
  • 42
    • 58349097659 scopus 로고    scopus 로고
    • State of deep coral ecosystems in the U. S. Pacific Islands region: Hawaii and the U. S. Pacific Territories
    • NOAA Tech., Memo, S.E. Lumsden, T.F. Horigan, A.W. Bruckner, G. Dorr (Eds.)
    • Parrish F.A., Baco A.R. State of deep coral ecosystems in the U. S. Pacific Islands region: Hawaii and the U. S. Pacific Territories. The State of Deep Coral Ecosystems of the United States 2007, 2007. NOAA Tech., Memo. S.E. Lumsden, T.F. Horigan, A.W. Bruckner, G. Dorr (Eds.).
    • (2007) The State of Deep Coral Ecosystems of the United States , pp. 2007
    • Parrish, F.A.1    Baco, A.R.2
  • 48
    • 0000946619 scopus 로고
    • The biology of seamounts
    • Rogers A.D. The biology of seamounts. Adv. Mar. Biol. 1994, 30:305-354.
    • (1994) Adv. Mar. Biol. , vol.30 , pp. 305-354
    • Rogers, A.D.1
  • 49
    • 33745287141 scopus 로고    scopus 로고
    • Systematics of the bubblegum corals (Cnidaria: Octocorallia: Paragorgiidae) with description of new species from New Zealand and the Eastern Pacific
    • Sanchez J.A. Systematics of the bubblegum corals (Cnidaria: Octocorallia: Paragorgiidae) with description of new species from New Zealand and the Eastern Pacific. Zootaxa 2005, 1014:1-72.
    • (2005) Zootaxa , vol.1014 , pp. 1-72
    • Sanchez, J.A.1
  • 50
    • 0038277003 scopus 로고    scopus 로고
    • Molecular phylogenetic analyses of shallow-water Caribbean octocorals
    • Sanchez J.A., McFadden C.S., France S.C., Lasker H.R. Molecular phylogenetic analyses of shallow-water Caribbean octocorals. Mar. Biol. 2003, 142:975-987.
    • (2003) Mar. Biol. , vol.142 , pp. 975-987
    • Sanchez, J.A.1    McFadden, C.S.2    France, S.C.3    Lasker, H.R.4
  • 51
    • 33750976829 scopus 로고    scopus 로고
    • Seamount invertebrates: composition and vulnerability
    • University of British Columbia, Vancouver, T. Morato, D. Pauly (Eds.)
    • Stocks K. Seamount invertebrates: composition and vulnerability. Seamounts: Biodiversity and Figsheries 2004, University of British Columbia, Vancouver. T. Morato, D. Pauly (Eds.).
    • (2004) Seamounts: Biodiversity and Figsheries
    • Stocks, K.1
  • 52
    • 77952288356 scopus 로고    scopus 로고
    • Reproductive biology of the deep-sea octocoral Drifa glomerata in the Northwest Atlantic
    • Sun Z., Hamel J., Edinger E., Mercier A. Reproductive biology of the deep-sea octocoral Drifa glomerata in the Northwest Atlantic. Mar. Biol. 2010, 157:863-873.
    • (2010) Mar. Biol. , vol.157 , pp. 863-873
    • Sun, Z.1    Hamel, J.2    Edinger, E.3    Mercier, A.4
  • 53
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol 2011.
    • (2011) Mol. Biol. Evol
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 54
    • 79953309046 scopus 로고    scopus 로고
    • Complete mitochondrial genomes of two Japanese precious corals, Paracorallium japonicum and Corallium konojoi (Cnidaria, Octocorallia, Coralliidae): Notable differences in gene arrangement
    • Uda K., Komeda Y., Koyama H., Koga K., Fujita T., Iwasaki N., Suzuki T. Complete mitochondrial genomes of two Japanese precious corals, Paracorallium japonicum and Corallium konojoi (Cnidaria, Octocorallia, Coralliidae): Notable differences in gene arrangement. Gene 2011, 476:27-37.
    • (2011) Gene , vol.476 , pp. 27-37
    • Uda, K.1    Komeda, Y.2    Koyama, H.3    Koga, K.4    Fujita, T.5    Iwasaki, N.6    Suzuki, T.7
  • 55
    • 0032431190 scopus 로고    scopus 로고
    • Disturbance of the seabed by mobile fishing gear: a comparison to forest clearcutting
    • Watling L., Norse E.A. Disturbance of the seabed by mobile fishing gear: a comparison to forest clearcutting. Conserv. Biol. 1998, 12:1180-1197.
    • (1998) Conserv. Biol. , vol.12 , pp. 1180-1197
    • Watling, L.1    Norse, E.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.