Chromatin diminution in copepoda (Crustacea): Pattern, biological role and evolutionary aspects

Comparative Cytogenetics

Volumn 8, Issue 1, 2014, Pages 1-10

  Grishanin, Andrey ^a,b  

^a PAPANIN INSTITUTE FOR BIOLOGY OF INLAND WATERS   (Russian Federation)

^b DUBNA STATE UNIVERSITY   (Russian Federation)

Author keywords

Chromatin diminution; Copepoda; Crustacea; Cyclopoida; Evolution

Indexed keywords

EID: 84893730721     PISSN: 19930771     EISSN: 1993078X     Source Type: Journal    
DOI: 10.3897/CompCytogen.v8i1.5913     Document Type: Article

References (52)

1. Akif'ev AP (1974) "Silent" DNA and its evolutionary role. Priroda 9: 49-54. [in Russian]
2. Akif 'ev AP, Grishanin AK, Degtyarev SV (1998) Chromatin Diminution Accompanied by Reorganization of the Molecular Structure of the Genome: Evolutionary Aspects. Russian Journal of Genetics 34(6): 577-584.
3. Akif 'ev AP, Degtyarev SV, Grishanin AK (2002) Chromatin diminution is a key process explaining the eukaryotic genome size paradox and some mechanisms of genetic isolation. Russian Journal of Genetics 38(5): 486-495. doi: 10.1023/A:1015578811571
4. Akifyev AP, Grishanin AK (2005) Some conclusions on the role of redundant DNA and the mechanisms of eukaryotic genome evolution inferred from studies of chromatin diminution in Cyclopoida. Russian Journal of Developmental Biology 41(4): 366-377.
5. Amma K (1911) Uber die differenzeirung der Keimbahnzellen bei den Copepoden. Archive Experimental Zellforschung 6: 497-576.
6. Beermann S (1959) Chromatin diminution bei Copepoden. Chromosoma 10: 504-514. doi: 10.1007/BF00396586
7. Beermann S (1966) A quantitative study of chromatin diminution in embryonic mitosis of Cyclops furcifer. Genetics 54: 567-576.
8. Beermann S (1977) The diminution of heterochromatic chromosomal segments in Cyclops (Crustacea, Copepoda). Chromosoma 60: 297-344. doi: 10.1007/BF00292858
9. Beermann S, Meyer GF (1980) Chromatin rings as products of chromatin diminution in Cyclops furcifer. Chromosoma 77: 277-284. doi: 10.1007/BF00286053
10. Beermann S (1984) Circular and linear structures in chromatin diminution of Cyclops. Chromosoma 89: 321-328. doi: 10.1007/BF00331248
11. Chinnappa CC (1980) Bivalent forming race of Mesocyclops edax (Copepoda, Crustacea). Canadian Journal of Genetics and Cytology 22: 427-431.
12. Degtyarev S, Boykova T, Grishanin A, Belyakin S, Rubtsov N, Karamysheva T, Makarevich G, Akif 'ev A, Zhimulev I (2004) The molecular structure of the DNA fragments eliminated during chromatin diminution in Cyclops kolensis. Genome Research 14: 2287-2294. doi: 10.1101/gr.2794604
13. Dillon N (2004) Heterochromatin structure and function. Biology of the Cell 96: 631-637. doi: 10.1016/j.biolcel.2004.06.003
14. Dodson SI, Grishanin AK, Gross K, Wyngaard GA (2003) Morphological analysis of some cryptic species in the Acanthocyclops vernalis complex from North America. Hydrobiologia 500: 131-143. doi: 10.1023/A:1024678018090
15. Dorward HM, Wyngaard GA (1997) Variability and pattern of chromatin diminution in the freshwater Cyclopoida (Crustacea: Copepoda). Archive Hydrobiologia. Suppl. 107: 447-465.
16. Einsle U (1964) Die Gattung Cyclops s. str. im Bodensee. Archive Hydrobiologia. 60: 133-139.
17. Einsle U (1975) Revision der Gattung Cyclops s. strenuus Speciell der Abissorum-Gruppe. Instant Memorie Idrobiologia. 32: 57-219.
18. Einsle U (1993) Crustacea: Copepoda: Calanoida und Cyclopoida. Subwasserfauna on Mitteleuropa Bd. 8. Heft 4. Teil Gustav Fischer Verlag Stutgart, 1-209.
19. Einsle U (1994) Cyclops kikuchi Smirnov, 1932 (Copepoda, Cyclopoida) eine selbstandige art aus suddeutschen gewassern. Crustaceana 66(2): 240-246. doi: 10.1163/156854094X00729
20. Einsle U (1996) Cyclops heberti n. sp. and Cyclops singularis n. sp., two new species within the genus Cyclops ("strenuus-subgroup") (Crust. Copepoda) from ephemeral ponds in southern Germany. Hydrobiologia 319: 167-177. doi: 10.1007/BF00013729
21. Grishanin AK (1995) Romparative electron microscopic study of chromosomes and interphase nuclei in cells of Cyclops kolensis (Copepoda, Crustacea) before and after chromatin diminution. Russian Journal of Developmental Biology 26(3): 153-158.
22. Grishanin AK, Khudolii GA, Shaikhaaev GO, Brodskii VYa, Makarov VB, Akif 'ev AP (1996) Chromatin diminution in Cyclops kolensis (Copepoda, Crustacea) is a unique example of genetic engineering in nature. Russian Journal of Genetics 32(4): 424-430.
23. Grishanin AK, Akifiev AP, Dahms HU (2004) Nuclear DNA and remarks on chromatin diminution of cyclopoid copepods. Zoological Studies 43(2): 300-303.
24. Grishanin AK, Akifiev AP (2000) Interpopulation differentiation within Cyclops kolensis and Cyclops strenuus strenuus (Crustacea, Copepoda) evidence from cytogenetic methods. Hydrobiologia 417: 37-42. doi: 10.1023/A:1003819809155
25. Grishanin AK (2008) Cytogenetic studies of chromatin diminution in freshwater crustaceans is a new approach to the study redundant DNA eukaryotes. Dr. Sci. Dissertation, Moscow, Russian Federation: Koltzov Institute of Developmental Biology, Russian Academy of Sciences, 142 pp. [in Russian]
26. Grishanin AK, Rasch EM, Dodson SI, Wyngaard GA (2005) Variability in genetic architecture of the cryptic species complex of Acanthocyclops vernalis (Copepoda). I. Evidence from karyotypes, genome size, and ribosomal DNA sequences. Journal of Crustacean Biology 25(3): 375-383. doi: 10.1651/C-2558
27. Grishanin AK, Boikova TV, Marshak TL, Naumova EY, Zagoskin MV, Akif 'ev AP, Zhimulev IF (2006a) The conservatism of the genome structure of Cyclops kolensis. Doklady Biochemistry and Biophisics 408(1): 161-164. doi: 10.1134/S160767290603015X
28. Grishanin AK, Shekhovtsov AK, Boikova TV, Akif 'ev AP, Zhimulev IF (2006b) Chromatin diminution at the border of the XX and XXI centuries. Tsitologiia 48(5): 379-97. [in Russian]
29. Grishanin AK, Rasch EM, Dodson SI, Wyngaard GA (2006c) Genetic architecture of the cryptic speices complex of Acanthocyclops vernalis (Crustacea: Copepoda) II. Crossbreeding experiments, cytogenetics and a model of chromosomal evolution. Evolution 60: 37-46.
30. Hollick JB, Dorweiler JE, Chandler VL (1997) Paramutation and related allelic interactions. Trends in Genetics 13 (8): 302-307. doi: 10.1016/S0168-9525(97)01184-0
31. Ivankina EA, Alekseeva AL, Semeshin VF, Omelyanchuk LV, Palchikova IG, Sheveleva NG, Kirilchik SV, Zhimulev IF (2013) Cytophotometric determination of genome size in three species of Cyclops lake Baikal (Crustacea: Copepoda: Cyclopoida) in ontogenetic developement. Tsitologiya 55(1): 52-59.
32. Leech DM, Wyngaard GA (1996) Timing of chromatin diminution in the free-living fresh-water Cyclopoida (Copepoda). Journal of Crustacean Biology 16: 496-500. doi: 10.2307/1548739
33. Lecher P, Daniell D, Noel P (1995) Chromosomes and nuclear DNA of Crustacea. Invertebrate Reproduction and Development 27(2): 85-114. doi: 10.1080/07924259.1995.9672440
34. McLaren IA, Sevigny JM, Corkett CJ (1989) Temperature-dependent developement in Pseudocalanus species. Canadian Journal of Zoology 67: 552-558. doi: 10.1139/z89-078
35. Mirkovitch J, Mirault MF, Laemli UK (1984) Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell 39: 223-232. doi: 10.1016/0092-8674(84)90208-3
36. Meaburn KJ, Misteli T (2007) Cell Biology: Chromosome territories. Nature 445: 379-381. doi: 10.1038/445379a
37. Monchenko VI (2003) Freeliving Cyclopoida of the Ponto-Caspian basin. Kiev: Naukova dumka. 350 pp. [in Ukrainian]
38. Kochina EM, Monchenko VI (1986) The independence of Cyclops kikuchi(Crustacea, Cyclopidae) 1: 15-17.
39. Rasch EM, Wyngaard GA (2006) Changes in nuclear morphology assotiated with elevated DNA levels during gametogenesis in cyclopoid copepods with chromatin diminution. Invertebrate Biology 125(1): 56-69. doi: 10.1111/j.1744-7410.2006.00041.x
40. Rasch EM, Wyngaard GA, Connely BA (2008) Heterochromatin endoreduplication prior to gametogenesis and chromatin diminution during early embryogenesis in Mesocyclops edax (Copepoda: Crustacea). Journal of Morphology 269: 387-397. doi: 10.1002/jmor.10576
41. Robins JH, McLaren IA (1982) Unusual variations in nuclear DNA contents in the marine copepod Pseudocalanus. Canadian Journal of Zoology 24: 529-540.
42. Schofer C, Weipoltshammer K (2008) Gene dynamics and nuclear architecture during differentiation. Differentiation 76(1): 41-56.
43. Semeshin VF, Omelianchuk LV, Alekseeva AA, Ivankina EA, Sheveleva NG, Zhimulev IF (2011) DNA Content in Nuclei of Cyclops kolensis and Cyclops insignis (Crustacea, Copepoda). Cell and Tissue Biology 5(3): 300-310. doi: 10.1134/S1990519X11030102
44. Standiford DM (1989) The effect of chromatin diminution on the pattern of C-banding in the chromosomes of Acanthocyclops vernalis Fischer (Copepoda: Crustacea). Genetika 79: 207-214.
45. Stich H (1954) Stoffund Stromungeni der Spindel von Cyclops strenuus. Chromosoma. 6: 199-236. doi: 10.1007/BF01259940
46. Stich H (1962) Variations of the DNA content in embrional cells of Cyclops strenuus. Experimental Cell Research 26: 136-144. doi: 10.1016/0014-4827(62)90209-4
47. Wyngaard GA, Chinnappa CC (1982) General biology and cytology of cyclopoids. In: Developmental Biology of Freshwater Invertebrates. New York, Alan R. Liss.1: 485-533.
48. Wyngaard GA, Rasch EM (2000) Patterns of genome size in the Copepoda. Hydrobiologia 417: 43-56. doi: 10.1023/A:1003855322358
49. Wyngaard GA, Rasch EM, Manning NM, Gasser K, Domangue R (2005) The relationship between genome size, development rate, and body size in copepods. Hydrobiologia 532: 123-137. doi: 10.1007/s10750-004-9521-5
50. Wyngaard GA, Rash EM, Connely BA (2011) Unusual augmentation of germline genome size in Cyclops kolensis (Crustacea, Copepoda): further evidence in support of a revised model of chromatin diminution. Chromosome Research 19(7): 911-923. doi: 10.1007/s10577-011-9234-3
51. Zagoskin MV, Grishanin AK, Korolev AL, Palenko MV, Mucha DV (2008) Characterization of Cyclops kolensis inter-simple sequence repeats in germline and postdiminution somatic cells. Doklady Biochemistry and Biophisics 423(1): 337-341. doi: 10.1134/S1607672908060057
52. Zagoskin MV, Marshak TL, Mukha DV, Grishanin AK (2010) Chromatin diminution process regulates rRNA gene copy number in freshwater copepods. Acta Naturae 2(4): 52-57.