A kinetic study of the effects of light on circadian rhythmicity of the frq promoter of neurospora crassa

Journal of Biological Rhythms

Volumn 29, Issue 1, 2014, Pages 38-48

  Gooch, Van D ^a   Johnson, Alicia E ^a   Bourne, Brian J ^a   Nix, Bradley T ^a   Maas, Jonna A ^a   Fox, Julie A ^a   Loros, Jennifer J ^b   Larrondo, Luis F ^c   Dunlap, Jay C ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b DARTMOUTH MEDICAL SCHOOL   (United States)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

Author keywords

circadian; entrainment; frq; luminescence; Neurospora; PRC; PTC; VIVID; WCC

Indexed keywords

FRQ PROTEIN, NEUROSPORA CRASSA; FUNGAL PROTEIN; LUCIFERASE;

ARTICLE; CIRCADIAN; CIRCADIAN RHYTHM; DARKNESS; ENTRAINMENT; FRQ; GENE EXPRESSION REGULATION; GENETICS; KINETICS; LIGHT; LUMINESCENCE; METABOLISM; METHODOLOGY; NEUROSPORA; NEUROSPORA CRASSA; PHOTOPERIODICITY; PRC; PROMOTER REGION; PTC; RADIATION EXPOSURE; TIME; VIVID; WCC;

CIRCADIAN; ENTRAINMENT; FRQ; LUMINESCENCE; NEUROSPORA; PRC; PTC; VIVID; WCC;

CIRCADIAN RHYTHM; DARKNESS; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; KINETICS; LIGHT; LUCIFERASES; LUMINESCENT MEASUREMENTS; NEUROSPORA CRASSA; PHOTOPERIOD; PROMOTER REGIONS, GENETIC; TIME FACTORS;

EID: 84893574086     PISSN: 07487304     EISSN: 15524531     Source Type: Journal    
DOI: 10.1177/0748730413517981     Document Type: Article

References (44)

1. Belden WJ, Loros JJ, Dunlap JC. Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH. Mol Cell. 2007 ; 25: 587-600 (Pubitemid 46274440)
2. Bird RE, Hulstrom RL Simplified Clear Sky Model for Direct and Diffuse Insolation on Horizontal Surfaces. Technical Report No SERI/TR-642-761, Golden, CO: Solar Energy Research Institute ; 1981 :
3. Boulos Z, Macchi MM, Terman M. Twilights widen the range of photic entrainment in hamsters. J Biol Rhythms. 2002 ; 17: 353-363 (Pubitemid 37187338)
4. Chen CH, DeMay BS, Gladfelter AS, Dunlap JC, Loros JJ. Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proc Natl Acad Sci U S A. 2010a ; 107: 16715-16720
5. Chen CH, Dunlap JC, Loros JJ. Neurospora illuminates fungal photoreception. Fungal Genet Biol. 2010b ; 47: 922-929
6. Chen CH, Ringelberg CS, Gross RH, Dunlap JC, Loros JJ. Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora. EMBO J. 2009 ; 28: 1029-1042
7. Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D. Multiple oscillators regulate circadian gene expression in Neurospora. Proc Natl Acad Sci U S A. 2003 ; 100: 13597-13602 (Pubitemid 37444786)
8. Corrochano LM. Fungal photobiology: a synopsis. IMA Fungus. 2011 ; 2: 25-28
9. Crosthwaite SK, Loros JJ, Dunlap JC. Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript. Cell. 1995 ; 81: 1003-1012
10. Dharmananda S University of California-Santa Cruz ; 1980 :
11. Dunlap JC, Loros JJ Handbook of Photosensory Receptors. Briggs WR Spudich JL, ed. Weinheim, Germany: Wiley-VCH Verlag GmbH & Co. KGaA ; 2005: 371-389.
12. Dunlap JC, Loros JJ. How fungi keep time: circadian system in Neurospora and other fungi. Curr Opin Microbiol. 2006 ; 9: 579-587 (Pubitemid 44791992)
13. Elvin M, Loros JJ, Dunlap JC, Heintzen C. The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock. Genes Dev. 2005 ; 19: 2593-2605 (Pubitemid 41565979)
14. Evans JA, Elliott JA, Gorman MR. Circadian effects of light no brighter than moonlight. J Biol Rhythms. 2007 ; 22: 356-367 (Pubitemid 47077304)
15. Friedl MA, Kubicek CP, Druzhinina IS. Carbon source dependence and photostimulation of conidiation in Hypocrea atroviridis. Appl Environ Microbiol. 2008 ; 74: 245-250
16. Froehlich AC, Liu Y, Loros J, Dunlap JC. White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science. 2002 ; 297: 815-819 (Pubitemid 34839627)
17. Froehlich AC, Loros JJ, Dunlap JC. Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY. Proc Natl Acad Sci U S A. 2003 ; 100: 5914-5919 (Pubitemid 36576907)
18. Gooch VD Limit Cycle Displacement Model of Circadian Rhythms. Paper 11. Morris, MN: University of Minnesota-Morris ; 2007: 1.
19. Gooch VD, Johnson AE, Larrondo LF, Loros JJ, Dunlap JC. Bright to dim oscillatory response of the Neurospora circadian oscillator. J Biol Rhythms. 2014 ; 29: 49-59
20. Gooch VD, Mehra A, Larrondo LF, Fox J, Touroutoutoudis M, Loros JJ, Dunlap JC. Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock. Eukaryot Cell. 2008 ; 7: 28-37 (Pubitemid 351959591)
21. Gooch VD, Wehseler RA, Gross CG. Temperature effects on the resetting of the phase of the Neurospora circadian rhythm. J Biol Rhythms. 1994 ; 9: 83-94
22. Heintzen C, Loros JJ, Dunlap JC. The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting. Cell. 2001 ; 104: 453-464 (Pubitemid 32206465)
23. Hunt SM, Thompson S, Elvin M, Heintzen C. VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora. Proc Natl Acad Sci U S A. 2010 ; 107: 16709-16714
24. Johnson CH, Elliott JA, Foster R. Entrainment of circadian programs. Chronobiol Int. 2003 ; 20: 741-774 (Pubitemid 37187518)
25. Lakin-Thomas PL, Bell-Pedersen D, Brody S. The genetics of circadian rhythms in Neurospora. Adv Genet. 2011 ; 74: 55-103
26. Liu Y, Merrow M, Loros JJ, Dunlap JC. How temperature changes reset a circadian oscillator. Science. 1998 ; 281: 825-829 (Pubitemid 28376043)
27. Malzahn E, Ciprianidis S, Kaldi K, Schafmeier T, Brunner M. Photoadaptation in Neurospora by competitive interaction of activating and inhibitory LOV domains. Cell. 2010 ; 142: 762-772
28. Peterson EL. A limit cycle interpretation of a mosquito circadian oscillator. J Theor Biol. 1980 ; 84: 281-310 (Pubitemid 10054818)
29. Remi J, Merrow M, Roenneberg T. A circadian surface of entrainment: varying T, τ, and photoperiod in Neurospora crassa. J Biol Rhythms. 2010 ; 25: 318-328
30. Rieger D, Fraunholz C, Popp J, Bichler D, Dittmann R, Helfrich-Forster C. The fruit fly Drosophila melanogaster favors dim light and times its activity peaks to early dawn and late dusk. J Biol Rhythms. 2007 ; 22: 387-399 (Pubitemid 47507060)
31. Rieger D, Peschel N, Dusik V, Glotz S, Helfrich-Forster C. The ability to entrain to long photoperiods differs between 3 Drosophila melanogaster wild-type strains and is modified by twilight simulation. J Biol Rhythms. 2012 ; 27: 37-47
32. Roenneberg T, Foster RG. Twilight times: light and the circadian system. Photochem Photobiol. 1997 ; 66: 549-561 (Pubitemid 127470132)
33. Roenneberg T, Remi J, Merrow M. Modeling a circadian surface. J Biol Rhythms. 2010 ; 25: 340-349
34. Sargent ML, Briggs WR. The effects of light on a circadian rhythm of conidiation in Neurospora. Plant Physiol. 1967 ; 42: 1504-1510
35. Sargent ML, Briggs WR, Woodward DO. Circadian nature of a rhythm expressed by an invertaseless strain of Neurospora crassa. Plant Physiol. 1966 ; 41: 1343-1349
36. Saunders DS. The circadian eclosion rhythm in Sarcophaga argyrostoma: some comparisons with the photoperiodic "clock.". J Comp Physiol. 1976 ; 110: 111-133
37. Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ. vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genet Biol. 2001 ; 32: 169-181 (Pubitemid 34229822)
38. Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF, et al. Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for Neurospora White Collar Complex. Eukaryot Cell. 2010 ; 9: 1549-1556
39. Tan Y, Dragovic Z, Roenneberg T, Merrow M. Entrainment dissociates transcription and translation of a circadian clock gene in Neurospora. Curr Biol. 2004 ; 14: 433-438 (Pubitemid 38431179)
40. Vanin S, Bhutani S, Montelli S, Menegazzi P, Green EW, Pegoraro M, Sandrelli F, Costa R, Kyriacou CP. Unexpected features of Drosophila circadian behavioural rhythms under natural conditions. Nature. 2012 ; 484: 371-375
41. Vitalini MW, de Paula RM, Park WD, Bell-Pedersen D. The rhythms of life: circadian output pathways in Neurospora. J Biol Rhythms. 2006 ; 21: 432-444 (Pubitemid 44706825)
42. Vogel HJ. A convenient growth medium for Neurospora (medium N.). Microb Genet Bull. 1956 ; 13: 42-43
43. Winfree AT The Geometry of Biological Time. New York: Springer Verlag ; 1980 :
44. Yu Y, Dong W, Altimus C, Tang X, Griffith J, Morello M, Dudek L, Arnold J, Schuttler HB. A genetic network for the clock of Neurospora crassa. Proc Natl Acad Sci U S A. 2007 ; 104: 2809-2814 (Pubitemid 46327961)