-
1
-
-
67349209853
-
Next-generation DNA sequencing techniques
-
Ansorge WJ (2009) Next-generation DNA sequencing techniques. Nat Biotechnol 25:95-203
-
(2009)
Nat Biotechnol
, vol.25
, pp. 95-203
-
-
Ansorge, W.J.1
-
2
-
-
77649206429
-
Conditions for the evolution of gene clusters in bacterial genomes
-
10.1371/journal.pcbi.1000672
-
Ballouz S, Francis AR, Lan R, Tanaka MM (2010) Conditions for the evolution of gene clusters in bacterial genomes. PLoS Comp Biol 6:e1000672
-
(2010)
PLoS Comp Biol
, vol.6
, pp. 1000672
-
-
Ballouz, S.1
Francis, A.R.2
Lan, R.3
Tanaka, M.M.4
-
3
-
-
84908073777
-
Combinatorial biosynthesis of cyclic lipopeptide antibiotics: A model for synthetic biology to accelerate the evolution of secondary metabolite biosynthetic pathways
-
10.1021/sb3000673 23654258
-
Baltz RH (2012) Combinatorial biosynthesis of cyclic lipopeptide antibiotics: a model for synthetic biology to accelerate the evolution of secondary metabolite biosynthetic pathways. ACS Synth Biol. doi: 10.1021/sb3000673
-
(2012)
ACS Synth Biol
-
-
Baltz, R.H.1
-
4
-
-
84997822091
-
Draft genome sequence of streptomyces rapamycinicus NRRL 5491, the producer of the immunosuppressant rapamycin
-
Baranasic D, Gacesa R, Starcevic A, Zucko A, Blažič M, Horvat M, Gjuračić K, Fujs Š, Hranueli D, Kosec G, Cullum J, Petković H (2013) Draft genome sequence of streptomyces rapamycinicus NRRL 5491, the producer of the immunosuppressant rapamycin. Gen Ann 1:e00581-13
-
(2013)
Gen Ann
, vol.1
, pp. 00581-00613
-
-
Baranasic, D.1
Gacesa, R.2
Starcevic, A.3
Zucko, A.4
Blažič, M.5
Horvat, M.6
Gjuračić, K.7
Fujs, Š.8
Hranueli, D.9
Kosec, G.10
Cullum, J.11
Petković, H.12
-
5
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
12000953 10.1038/417141a
-
Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeño-Tárraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
Harris, D.E.7
Quail, M.A.8
Kieser, H.9
Harper, D.10
Bateman, A.11
Brown, S.12
Chandra, G.13
Chen, C.W.14
Collins, M.15
Cronin, A.16
Fraser, A.17
Goble, A.18
Hidalgo, J.19
Hornsby, T.20
Howarth, S.21
Huang, C.H.22
Kieser, T.23
Larke, L.24
Murphy, L.25
Oliver, K.26
O'Neil, S.27
Rabbinowitsch, E.28
Rajandream, M.A.29
Rutherford, K.30
Rutter, S.31
Seeger, K.32
Saunders, D.33
Sharp, S.34
Squares, R.35
Squares, S.36
Taylor, K.37
Warren, T.38
Wietzorrek, A.39
Woodward, J.40
Barrell, B.G.41
Parkhill, J.42
Hopwood, D.A.43
more..
-
6
-
-
84870799792
-
Annotation of the modular polyketide synthase and non-ribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488
-
1:CAS:528:DC%2BC38Xhs1yktr3M 3497360 22983969 10.1128/AEM.01891-12
-
Blazic M, Starcevic A, Lisfi M, Baranasic D, Goranovic D, Fujs S, Kuscer E, Kosec G, Petkovic H, Cullum J, Hranueli D, Zucko J (2012) Annotation of the modular polyketide synthase and non-ribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488. Appl Environ Microbiol 78:8183-8190
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8183-8190
-
-
Blazic, M.1
Starcevic, A.2
Lisfi, M.3
Baranasic, D.4
Goranovic, D.5
Fujs, S.6
Kuscer, E.7
Kosec, G.8
Petkovic, H.9
Cullum, J.10
Hranueli, D.11
Zucko, J.12
-
7
-
-
71049159619
-
Aspects on evolution of fungal beta-lactam biosynthesis gene clusters and recruitment of trans-acting factors
-
1:CAS:528:DC%2BD1MXhsVWlsL7I 19863978 10.1016/j.phytochem.2009.09.011
-
Brakhage AA, Thön M, Spröte P, Scharf DH, Al-Abdallah Q, Wolke SM, Hortschansky P (2009) Aspects on evolution of fungal beta-lactam biosynthesis gene clusters and recruitment of trans-acting factors. Phytochemistry 70:1801-1811
-
(2009)
Phytochemistry
, vol.70
, pp. 1801-1811
-
-
Brakhage, A.A.1
Thön, M.2
Spröte, P.3
Scharf, D.H.4
Al-Abdallah, Q.5
Wolke, S.M.6
Hortschansky, P.7
-
8
-
-
0036009328
-
Hexane derivatives of nystatin produced as a result of an induced rearrangement within the nysC polyketide synthase gene in S. Noursei ATCC 11455
-
1:CAS:528:DC%2BD38XitlGgtL4%3D 11927262 10.1016/S1074-5521(02)00108-4
-
Brautaset T, Bruheim P, Sletta H, Hagen L, Ellingsen TE, Strøm AR, Valla S, Zotchev SB (2002) Hexane derivatives of nystatin produced as a result of an induced rearrangement within the nysC polyketide synthase gene in S. noursei ATCC 11455. Chem Biol 9:367-373
-
(2002)
Chem Biol
, vol.9
, pp. 367-373
-
-
Brautaset, T.1
Bruheim, P.2
Sletta, H.3
Hagen, L.4
Ellingsen, T.E.5
Strøm, A.R.6
Valla, S.7
Zotchev, S.B.8
-
9
-
-
0032475992
-
Harnessing the biosynthetic code: Combinations, permutations, and mutations
-
1:CAS:528:DyaK1cXmsFKru74%3D 9756477 10.1126/science.282.5386.63
-
Cane DE, Walsh CT, Khosla C (1998) Harnessing the biosynthetic code: combinations, permutations, and mutations. Science 282:63-68
-
(1998)
Science
, vol.282
, pp. 63-68
-
-
Cane, D.E.1
Walsh, C.T.2
Khosla, C.3
-
10
-
-
0034013269
-
Predictive, structure-based model of amino acid recognition by non-ribosomal peptide synthetase adenylation domains
-
1:CAS:528:DC%2BD3cXitVOkt7k%3D 10712928 10.1016/S1074-5521(00)00091-0
-
Challis GL, Ravel J, Townsend CA (2000) Predictive, structure-based model of amino acid recognition by non-ribosomal peptide synthetase adenylation domains. Chem Biol 7:211-224
-
(2000)
Chem Biol
, vol.7
, pp. 211-224
-
-
Challis, G.L.1
Ravel, J.2
Townsend, C.A.3
-
11
-
-
84878234603
-
Databases of the thiotemplate modular systems (CSDB) and their in silico recombinants (r-CSDB)
-
1:CAS:528:DC%2BC3sXnsl2ku7c%3D 23504028 10.1007/s10295-013-1252-z
-
Diminic J, Zucko J, TrninicRuzic I, Gacesa R, Hranueli D, Long PF, Cullum J, Starcevic A (2013) Databases of the thiotemplate modular systems (CSDB) and their in silico recombinants (r-CSDB). J Ind Microbiol Biotechnol 40:653-659
-
(2013)
J Ind Microbiol Biotechnol
, vol.40
, pp. 653-659
-
-
Diminic, J.1
Zucko, J.2
Trninicruzic, I.3
Gacesa, R.4
Hranueli, D.5
Long, P.F.6
Cullum, J.7
Starcevic, A.8
-
12
-
-
0032879027
-
Forty years of genetics with Streptomyces: From in vivo through in vitro to in silico
-
1:CAS:528:DyaK1MXmsVyhsbk%3D 10517572
-
Hopwood DA (1999) Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico. Microbiology 145:2183-2202
-
(1999)
Microbiology
, vol.145
, pp. 2183-2202
-
-
Hopwood, D.A.1
-
13
-
-
33750428183
-
Natural biocombinatorics in the polyketide synthase genes of the actino bacterium Streptomyces avermitilis
-
10.1371/journal.pcbi.0020132
-
Jenke-Kodama H, Börner T, Dittmann E (2006) Natural biocombinatorics in the polyketide synthase genes of the actino bacterium Streptomyces avermitilis. PLoS Comp Biol 2:e132
-
(2006)
PLoS Comp Biol
, vol.2
, pp. 132
-
-
Jenke-Kodama, H.1
Börner, T.2
Dittmann, E.3
-
14
-
-
80053620569
-
Avenolide, a Streptomyces hormone controlling antibiotic production in Streptomyces avermitilis
-
1:CAS:528:DC%2BC3MXht1Kmtb3E 3182739 21930904 10.1073/pnas.1113908108
-
Kitani S, Miyamoto KT, Takamatsu S, Herawati E, Iguchi H, Nishitomi K, Uchida M, Nagamitsu T, Omura S, Ikeda H, Nihira T (2011) Avenolide, a Streptomyces hormone controlling antibiotic production in Streptomyces avermitilis. Proc Natl Acad Sci U S A 108:16410-16415
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 16410-16415
-
-
Kitani, S.1
Miyamoto, K.T.2
Takamatsu, S.3
Herawati, E.4
Iguchi, H.5
Nishitomi, K.6
Uchida, M.7
Nagamitsu, T.8
Omura, S.9
Ikeda, H.10
Nihira, T.11
-
15
-
-
0024535307
-
Cloning, characterization, and expression in Escherichia coli of the Streptomyces clavuligerus gene encoding deacetoxycephalosporin C synthetase
-
1:CAS:528:DyaK3cXhsV2n 209661 2644235
-
Kovacevic S, Weigel BJ, Tobin MB, Ingolia TD, Miller JR (1989) Cloning, characterization, and expression in Escherichia coli of the Streptomyces clavuligerus gene encoding deacetoxycephalosporin C synthetase. J Bacteriol 171:754-760
-
(1989)
J Bacteriol
, vol.171
, pp. 754-760
-
-
Kovacevic, S.1
Weigel, B.J.2
Tobin, M.B.3
Ingolia, T.D.4
Miller, J.R.5
-
16
-
-
77953965169
-
Coevolution of antibiotic production and counter-resistance in soil bacteria
-
1:CAS:528:DC%2BC3cXkslSqtL0%3D 20067498 10.1111/j.1462-2920.2009.02125.x
-
Laskaris P, Tolba S, Calvo-Bado L, Wellington EM (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environ Microbiol 12:783-796
-
(2010)
Environ Microbiol
, vol.12
, pp. 783-796
-
-
Laskaris, P.1
Tolba, S.2
Calvo-Bado, L.3
Wellington, E.M.4
-
17
-
-
0021238139
-
Molecular cloning of the whole biosynthetic pathway of a streptomyces antibiotic and its expression in a heterologous host
-
1:CAS:528:DyaL2cXkvVCru7Y%3D 6328317 10.1038/309462a0
-
Malpartida F, Hopwood DA (1984) Molecular cloning of the whole biosynthetic pathway of a streptomyces antibiotic and its expression in a heterologous host. Nature 309:462-464
-
(1984)
Nature
, vol.309
, pp. 462-464
-
-
Malpartida, F.1
Hopwood, D.A.2
-
18
-
-
79959920872
-
Anti SMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
1:CAS:528:DC%2BC3MXosVOms7o%3D 21672958 10.1093/nar/gkr466
-
Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R (2011) Anti SMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucl Acids Res 39:W339-W346
-
(2011)
Nucl Acids Res
, vol.39
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
De Jager, V.4
Zakrzewski, P.5
Fischbach, M.A.6
Weber, T.7
Takano, E.8
Breitling, R.9
-
19
-
-
70350722394
-
Genomic basis for natural product biosynthetic diversity in the actinomycetes
-
1:CAS:528:DC%2BD1MXht12ht7vF 3063060 19844637 10.1039/b817069j
-
Nett M, Ikeda H, Moore BS (2009) Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat Prod Rep 26:1362-1384
-
(2009)
Nat Prod Rep
, vol.26
, pp. 1362-1384
-
-
Nett, M.1
Ikeda, H.2
Moore, B.S.3
-
20
-
-
0035834039
-
Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites
-
1:CAS:528:DC%2BD3MXns1Cjtrk%3D 59794 11572948 10.1073/pnas.211433198
-
Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, Takahashi Y, Horikawa H, Nakazawa H, Osonoe T, Kikuchi H, Shiba T, Sakaki Y, Hattori M (2001) Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci U S A 98:12215-12220
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 12215-12220
-
-
Omura, S.1
Ikeda, H.2
Ishikawa, J.3
Hanamoto, A.4
Takahashi, C.5
Shinose, M.6
Takahashi, Y.7
Horikawa, H.8
Nakazawa, H.9
Osonoe, T.10
Kikuchi, H.11
Shiba, T.12
Sakaki, Y.13
Hattori, M.14
-
21
-
-
42449158575
-
Evolution of polyketide synthases in bacteria
-
1:CAS:528:DC%2BD1cXkt12qsro%3D 2290765 18250311 10.1073/pnas.0710107105
-
Ridley CP, Lee HY, Khosla C (2008) Evolution of polyketide synthases in bacteria. Proc Natl Acad Sci U S A 105:4595-4600
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4595-4600
-
-
Ridley, C.P.1
Lee, H.Y.2
Khosla, C.3
-
22
-
-
0033179468
-
The specificity-conferring code of adenylation domains in non-ribosomal peptide synthetases
-
1:CAS:528:DyaK1MXlsVynsLY%3D 10421756 10.1016/S1074-5521(99)80082-9
-
Stachelhaus T, Mootz HD, Marahiel MA (1999) The specificity-conferring code of adenylation domains in non-ribosomal peptide synthetases. Chem Biol 6:493-505
-
(1999)
Chem Biol
, vol.6
, pp. 493-505
-
-
Stachelhaus, T.1
Mootz, H.D.2
Marahiel, M.A.3
-
23
-
-
80052468396
-
A novel docking domain interface model predicting recombination between homologous modular biosynthetic gene clusters
-
10.1007/s10295-010-0909-0
-
Starcevic A, Diminic J, Zucko J, Elbekali M, Schlosser T, Lisfi M, Vukelic A, Long PF, Hranueli D, Cullum J (2011) A novel docking domain interface model predicting recombination between homologous modular biosynthetic gene clusters. J Ind Microbiol Biotechnol 13:1295-1304
-
(2011)
J Ind Microbiol Biotechnol
, vol.13
, pp. 1295-1304
-
-
Starcevic, A.1
Diminic, J.2
Zucko, J.3
Elbekali, M.4
Schlosser, T.5
Lisfi, M.6
Vukelic, A.7
Long, P.F.8
Hranueli, D.9
Cullum, J.10
-
24
-
-
84863299498
-
Recombinational biosynthesis of polyketides
-
1:CAS:528:DC%2BC38XisFGmu7g%3D 22042517 10.1007/s10295-011-1049-x
-
Starcevic A, Wolf K, Diminic J, Zucko J, Ruzic IT, Long PF, Hranueli D, Cullum J (2012) Recombinational biosynthesis of polyketides. J Ind Microbiol Biotechnol 39:503-511
-
(2012)
J Ind Microbiol Biotechnol
, vol.39
, pp. 503-511
-
-
Starcevic, A.1
Wolf, K.2
Diminic, J.3
Zucko, J.4
Ruzic, I.T.5
Long, P.F.6
Hranueli, D.7
Cullum, J.8
-
25
-
-
57149112966
-
ClustScan: An integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
-
1:CAS:528:DC%2BD1cXhsVCgtrnL 18978015 10.1093/nar/gkn685
-
Starcevic A, Zucko J, Simunkovic J, Long PF, Cullum J, Hranueli D (2008) ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures. Nucl Acids Res 36:6882-6892
-
(2008)
Nucl Acids Res
, vol.36
, pp. 6882-6892
-
-
Starcevic, A.1
Zucko, J.2
Simunkovic, J.3
Long, P.F.4
Cullum, J.5
Hranueli, D.6
-
26
-
-
77951294519
-
Non-ribosomal peptide synthetases: Structures and dynamics
-
1:CAS:528:DC%2BC3cXks1Sjsbc%3D 20153164 10.1016/j.sbi.2010.01.009
-
Strieker M, Tanovic A, Marahiel MA (2010) Non-ribosomal peptide synthetases: structures and dynamics. Curr Opin Struct Biol 20:234-240
-
(2010)
Curr Opin Struct Biol
, vol.20
, pp. 234-240
-
-
Strieker, M.1
Tanovic, A.2
Marahiel, M.A.3
-
27
-
-
0023774770
-
Cloning and expression in Escherichia coli of isopenicillin N synthetase genes from Streptomyces lipmanii and Aspergillus nidulans
-
1:CAS:528:DyaL1MXhs1OnsL4%3D 211376 3045077
-
Weigel BJ, Burgett SG, Chen VJ, Skatrud PL, Frolik CA, Queener SW, Ingolia TD (1988) Cloning and expression in Escherichia coli of isopenicillin N synthetase genes from Streptomyces lipmanii and Aspergillus nidulans. J Bacteriol 170:3817-3826
-
(1988)
J Bacteriol
, vol.170
, pp. 3817-3826
-
-
Weigel, B.J.1
Burgett, S.G.2
Chen, V.J.3
Skatrud, P.L.4
Frolik, C.A.5
Queener, S.W.6
Ingolia, T.D.7
-
28
-
-
84859643086
-
Combinatorial biosynthesis of polyketides: A perspective
-
1:CAS:528:DC%2BC38XisFyisLc%3D 3328608 22342766 10.1016/j.cbpa.2012.01. 018
-
Wong FT, Khosla C (2012) Combinatorial biosynthesis of polyketides: a perspective. Curr Opin Chem Biol 16:117-123
-
(2012)
Curr Opin Chem Biol
, vol.16
, pp. 117-123
-
-
Wong, F.T.1
Khosla, C.2
-
29
-
-
79251641942
-
Evolutionary dynamics of modular polyketide synthases, with implications for protein design and engineering
-
1:CAS:528:DC%2BC3MXhtFSitbo%3D 10.1038/ja.2010.141
-
Zucko J, Cullum J, Hranueli D, Long PF (2011) Evolutionary dynamics of modular polyketide synthases, with implications for protein design and engineering. J Antibiot (Tokyo) 64:89-92
-
(2011)
J Antibiot (Tokyo)
, vol.64
, pp. 89-92
-
-
Zucko, J.1
Cullum, J.2
Hranueli, D.3
Long, P.F.4
-
30
-
-
84867337991
-
Horizontal gene transfer and gene conversion drive evolution of modular polyketide synthases
-
1:CAS:528:DC%2BC38XhtlyntbrM 22644383 10.1007/s10295-012-1149-2
-
Zucko J, Long PF, Hranueli D, Cullum J (2012) Horizontal gene transfer and gene conversion drive evolution of modular polyketide synthases. J Ind Microbiol Biotechnol 39:1541-1547
-
(2012)
J Ind Microbiol Biotechnol
, vol.39
, pp. 1541-1547
-
-
Zucko, J.1
Long, P.F.2
Hranueli, D.3
Cullum, J.4
|