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Volumn 43, Issue 4, 2014, Pages 1221-1229

Protein induced fluorescence enhancement (PIFE) for probing protein-nucleic acid interactions

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; PROTEIN;

EID: 84893403637     PISSN: 03060012     EISSN: 14604744     Source Type: Journal    
DOI: 10.1039/c3cs60201j     Document Type: Review
Times cited : (177)

References (25)
  • 1
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • DOI 10.1038/nmeth.1208, PII NMETH.1208
    • R. Roy S. Hohng T. Ha A practical guide to single-molecule FRET Nat. Methods 2008 5 507 516 (Pubitemid 351761757)
    • (2008) Nature Methods , vol.5 , Issue.6 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 3
    • 33751157399 scopus 로고
    • Temperature-Dependence of Fluorescence and Photoisomerization in Symmetrical Carbocyanines-Influence of Medium Viscosity and Molecular-Structure
    • P. F. Aramendia R. M. Negri E. Sanroman Temperature-Dependence of Fluorescence and Photoisomerization in Symmetrical Carbocyanines-Influence of Medium Viscosity and Molecular-Structure J. Phys. Chem. 1994 98 3165 3173
    • (1994) J. Phys. Chem. , vol.98 , pp. 3165-3173
    • Aramendia, P.F.1    Negri, R.M.2    Sanroman, E.3
  • 4
    • 9244237061 scopus 로고    scopus 로고
    • ATP-dependent translocation of proteins along single-stranded DNA: Models and methods of analysis of pre-steady state kinetics
    • DOI 10.1016/j.jmb.2004.10.004, PII S0022283604012859
    • C. J. Fischer T. M. Lohman ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics J. Mol. Biol. 2004 344 1265 1286 (Pubitemid 39550477)
    • (2004) Journal of Molecular Biology , vol.344 , Issue.5 , pp. 1265-1286
    • Fischer, C.J.1    Lohman, T.M.2
  • 5
    • 77954009806 scopus 로고    scopus 로고
    • Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids
    • E. J. Tomko C. J. Fischer T. M. Lohman Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids Methods 2010 51 269 276
    • (2010) Methods , vol.51 , pp. 269-276
    • Tomko, E.J.1    Fischer, C.J.2    Lohman, T.M.3
  • 6
    • 84865828490 scopus 로고    scopus 로고
    • Fluorescence methods to study DNA translocation and unwinding kinetics by nucleic acid motors
    • C. J. Fischer E. J. Tomko C. G. Wu T. M. Lohman Fluorescence methods to study DNA translocation and unwinding kinetics by nucleic acid motors Methods Mol. Biol. 2012 875 85 104
    • (2012) Methods Mol. Biol. , vol.875 , pp. 85-104
    • Fischer, C.J.1    Tomko, E.J.2    Wu, C.G.3    Lohman, T.M.4
  • 8
    • 60749124538 scopus 로고    scopus 로고
    • Et al. Cytosolic viral sensor RIG-I is a 5′-triphosphate-dependent translocase on double-stranded RNA
    • S. Myong et al. Cytosolic viral sensor RIG-I is a 5′-triphosphate- dependent translocase on double-stranded RNA Science 2009 323 1070 1074
    • (2009) Science , vol.323 , pp. 1070-1074
    • Myong, S.1
  • 9
    • 79956335271 scopus 로고    scopus 로고
    • Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity
    • H. Hwang H. Kim S. Myong Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity Proc. Natl. Acad. Sci. U. S. A. 2011 108 7414 7418
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 7414-7418
    • Hwang, H.1    Kim, H.2    Myong, S.3
  • 10
    • 79951670919 scopus 로고    scopus 로고
    • Cyanine dyes in biophysical research: The photophysics of polymethine fluorescent dyes in biomolecular environments
    • M. Levitus S. Ranjit Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments Q. Rev. Biophy. 2011 44 123 151
    • (2011) Q. Rev. Biophy. , vol.44 , pp. 123-151
    • Levitus, M.1    Ranjit, S.2
  • 11
    • 34948825980 scopus 로고    scopus 로고
    • Fluorescence properties and photophysics of the sulfoindocyanine Cy3 linked covalently to DNA
    • DOI 10.1021/jp072912u
    • M. E. Sanborn B. K. Connolly K. Gurunathan M. Levitus Fluorescence properties and photophysics of the sulfoindocyanine Cy3 linked covalently to DNA J. Phys. Chem. B 2007 111 11064 11074 (Pubitemid 47522599)
    • (2007) Journal of Physical Chemistry B , vol.111 , Issue.37 , pp. 11064-11074
    • Sanborn, M.E.1    Connolly, B.K.2    Gurunathan, K.3    Levitus, M.4
  • 12
    • 67650507150 scopus 로고    scopus 로고
    • Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation
    • M. Sorokina H. R. Koh S. S. Patel T. Ha Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation J. Am. Chem. Soc. 2009 131 9630 9631
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 9630-9631
    • Sorokina, M.1    Koh, H.R.2    Patel, S.S.3    Ha, T.4
  • 13
    • 0035366378 scopus 로고    scopus 로고
    • Single-molecule fluorescence methods for the study of nucleic acids
    • DOI 10.1016/S0959-440X(00)00204-9
    • T. Ha Single-molecule fluorescence methods for the study of nucleic acids Curr. Opin. Struct. Biol. 2001 11 287 292 (Pubitemid 32568267)
    • (2001) Current Opinion in Structural Biology , vol.11 , Issue.3 , pp. 287-292
    • Ha, T.1
  • 14
    • 60749124538 scopus 로고    scopus 로고
    • Et al. Cytosolic Viral Sensor RIG-I is a 5′-Triphosphate-Dependent Translocase on Double-Stranded RNA
    • S. Myong et al. Cytosolic Viral Sensor RIG-I is a 5′-Triphosphate- Dependent Translocase on Double-Stranded RNA Science 2009 323 1070 1074
    • (2009) Science , vol.323 , pp. 1070-1074
    • Myong, S.1
  • 15
    • 77749322591 scopus 로고    scopus 로고
    • Stepwise translocation of nucleic acid motors
    • S. Myong T. Ha Stepwise translocation of nucleic acid motors Curr. Opin. Struct. Biol. 2010 20 121 127
    • (2010) Curr. Opin. Struct. Biol. , vol.20 , pp. 121-127
    • Myong, S.1    Ha, T.2
  • 16
    • 84870552801 scopus 로고    scopus 로고
    • Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase i
    • R. P. Markiewicz K. B. Vrtis D. Rueda L. J. Romano Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase I Nucleic Acids Res. 2012 40 7975 7984
    • (2012) Nucleic Acids Res. , vol.40 , pp. 7975-7984
    • Markiewicz, R.P.1    Vrtis, K.B.2    Rueda, D.3    Romano, L.J.4
  • 17
    • 84883125672 scopus 로고    scopus 로고
    • Et al. Srs2 prevents Rad51 filament formation by repetitive motion on DNA
    • Y. Qiu et al. Srs2 prevents Rad51 filament formation by repetitive motion on DNA Nat. Commun. 2013 4 2281
    • (2013) Nat. Commun. , vol.4 , pp. 2281
    • Qiu, Y.1
  • 18
    • 27644514163 scopus 로고    scopus 로고
    • Repetitive shuttling of a motor protein on DNA
    • DOI 10.1038/nature04049, PII N04049
    • S. Myong I. Rasnik C. Joo T. M. Lohman T. Ha Repetitive shuttling of a motor protein on DNA Nature 2005 437 1321 1325 (Pubitemid 41568672)
    • (2005) Nature , vol.437 , Issue.7063 , pp. 1321-1325
    • Myong, S.1    Rasnik, I.2    Joo, C.3    Lohman, T.M.4    Ha, T.5
  • 19
    • 33746713745 scopus 로고    scopus 로고
    • Real-Time Observation of RecA Filament Dynamics with Single Monomer Resolution
    • DOI 10.1016/j.cell.2006.06.042, PII S0092867406009470
    • C. Joo et al. Real-time observation of RecA filament dynamics with single monomer resolution Cell 2006 126 515 527 (Pubitemid 44163610)
    • (2006) Cell , vol.126 , Issue.3 , pp. 515-527
    • Joo, C.1    McKinney, S.A.2    Nakamura, M.3    Rasnik, I.4    Myong, S.5    Ha, T.6
  • 20
    • 34547595373 scopus 로고    scopus 로고
    • Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
    • DOI 10.1126/science.1144130
    • S. Myong M. M. Bruno A. M. Pyle T. Ha Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase Science 2007 317 513 516 (Pubitemid 47196115)
    • (2007) Science , vol.317 , Issue.5837 , pp. 513-516
    • Myong, S.1    Bruno, M.M.2    Pyle, A.M.3    Ha, T.4
  • 21
    • 76049130687 scopus 로고    scopus 로고
    • Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase
    • G.-Q. Tang R. Roy R. P. Bandwar T. Ha S. S. Patel Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase Proc. Natl. Acad. Sci. U. S. A. 2009 106 22175 22180
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 22175-22180
    • Tang, G.-Q.1    Roy, R.2    Bandwar, R.P.3    Ha, T.4    Patel, S.S.5
  • 22
    • 0037080166 scopus 로고    scopus 로고
    • Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine
    • DOI 10.1021/bi011137k
    • M. S. Dillingham D. B. Wigley M. R. Webb Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine Biochemistry 2002 41 643 651 (Pubitemid 34062036)
    • (2002) Biochemistry , vol.41 , Issue.2 , pp. 643-651
    • Dillingham, M.S.1    Wigley, D.B.2    Webb, M.R.3
  • 23
    • 77955605175 scopus 로고    scopus 로고
    • Et al. PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps
    • J. Park et al. PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps Cell 2010 142 544 555
    • (2010) Cell , vol.142 , pp. 544-555
    • Park, J.1
  • 25
    • 67649637509 scopus 로고    scopus 로고
    • Et al. Srs2 Disassembles Rad51 Filaments by a Protein-Protein Interaction Triggering ATP Turnover and Dissociation of Rad51 from DNA
    • E. Antony et al. Srs2 Disassembles Rad51 Filaments by a Protein-Protein Interaction Triggering ATP Turnover and Dissociation of Rad51 from DNA Mol. Cell 2009 35 105 115
    • (2009) Mol. Cell , vol.35 , pp. 105-115
    • Antony, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.