Variability in soil microbial community and activity between coastal and riparian wetlands in the Yangtze River estuary - Potential impacts on carbon sequestration

Soil Biology and Biochemistry

Volumn 70, Issue , 2014, Pages 221-228

  Hu, Yu ^a   Wang, Lei ^a   Tang, Yushu ^a   Li, Yanli ^a   Chen, Jinhai ^a   Xi, Xuefei ^a   Zhang, Yannan ^a   Fu, Xiaohua ^a   Wu, Jihua ^b   Sun, Ying ^c  

^a College of Environmental Science and Engineering Tongji University ^*  (China)

^b FUDAN UNIVERSITY   (China)

^c Shanghai Jiuduansha Wetland National Nature Reserve Administration Division   (China)

Author keywords

Coastal salt marsh; Riparian wetland; Soil microbial activity; Soil microbial community; Soil organic carbon sequestration; Soil respiration; Yangtze River estuary

Indexed keywords

RIPARIAN WETLAND; SALT MARSHES; SOIL MICROBIAL ACTIVITIES; SOIL MICROBIAL COMMUNITY; SOIL ORGANIC CARBON SEQUESTRATION; SOIL RESPIRATION; YANGTZE RIVER ESTUARY;

CARBON; COASTAL ZONES; ESTUARIES; FORESTRY; MICROORGANISMS; RIVER POLLUTION; SOILS;

WETLANDS;

BIOMASS; CARBON SEQUESTRATION; COASTAL ZONE; ESTUARINE ENVIRONMENT; METABOLISM; MICROBIAL COMMUNITY; RIPARIAN VEGETATION; RIPARIAN ZONE; SALTMARSH; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SOIL RESPIRATION;

CHINA; YANGTZE ESTUARY;

EID: 84892874653     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.12.025     Document Type: Article

References (60)

1. Allison S.D., Wallenstein M.D., Bradford M.A. Soil-carbon response to warming dependent on microbial physiology. Nature Geoscience 2010, 3:336-340.
2. Barbier E.B., Hacker S.D., Kennedy C., Koch E.W., Stier A.C., Silliman B.R. The value of estuarine and coastal ecosystem services. Ecological Monographs 2011, 81:169-193.
3. Bardgett R.D., Freeman C., Ostle N.J. Microbial contributions to climate change through carbon cycle feedbacks. ISME Journal 2008, 2:805-814.
4. Bernal B., Mitsch W.J. Acomparison of soil carbon pools and profiles in wetlands in Costa Rica and Ohio. Ecological Engineering 2008, 34:311-323.
5. Bernal B., Mitsch W.J. Comparing carbon sequestration in temperate freshwater wetland communities. Global Change Biology 2012, 18:1636-1647.
6. Bowden R.D., Davidson E., Savage K., Arabia C., Steudler P. Chronic nitrogen additions reduce total soil respiration and microbial respiration in temperate forest soils at the Harvard Forest. Forest Ecology and Management 2004, 196:43-56.
7. Brevik E.C., Homburg J.A. A5000 year record of carbon sequestration from a coastal lagoon and wetland complex, Southern California, USA. Catena 2004, 57:221-232.
8. Brosius J., Palmer M.L., Kennedy P.J., Noller H.F. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 1978, 75:4801-4805.
9. Burke D.J., Smemo K.A., Lopez-Gutierrez J.C., DeForest J.L. Soil fungi influence the distribution of microbial functional groups that mediate forest greenhouse gas emissions. Soil Biology & Biochemistry 2012, 53:112-119.
10. Callaway J.C., Borgnis E.L., Turner R.E., Milan C.S. Carbon sequestration and sediment accretion in San Francisco Bay tidal wetlands. Estuaries and Coasts 2012, 35:1163-1181.
11. 2 leads to loss of soil carbon. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:4990-4995.
12. Cheng F., Peng X.B., Zhao P., Yuan J., Zhong C.G., Cheng Y.L., Cui C., Zhang S.X. Soil microbial biomass, basal respiration and enzyme activity of main forest types in the Qinling Mountains. PLoS One 2013, 8:e67353.
13. Cleveland C., Nemergut D., Schmidt S., Townsend A. Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition. Biogeochemistry 2007, 82:229-240.
14. Cowardin L.M., Carter V., Golet F.C., LaRoe E.T. Classification of Wetlands and Deepwater Habitats of the United States 1979, U.S. Department of the Interior, Fish and Wildlife Service, Washington, DC.
15. DeLorenzo S., Brauer S.L., Edgmont C.A., Herfort L., Tebo B.M., Zuber P. Ubiquitous dissolved inorganic carbon assimilation by marine bacteria in the Pacific Northwest coastal ocean as determined by stable isotope probing. PLoS One 2012, 7:e46695.
16. Dilly O. Microbial respiratory quotient during basal metabolism and after glucose amendment in soils and litter. Soil Biology & Biochemistry 2001, 33:117-127.
17. Garneau M.E., Vincent W.F., Alonso-Saez L., Gratton Y., Lovejoy C. Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem. Aquatic Microbial Ecology 2006, 42:27-40.
18. German D.P., Marcelo K.R.B., Stone M.M., Allison S.D. The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study. Global Change Biology 2012, 18:1468-1479.
19. Gomez-Casanovas N., Matamala R., Cook D.R., Gonzalez-Meler M.A. Net ecosystem exchange modifies the relationship between the autotrophic and heterotrophic components of soil respiration with abiotic factors in prairie grasslands. Global Change Biology 2012, 18:2532-2545.
20. Gonzalez-Alcaraz M.N., Egea C., Jimenez-Carceles F.J., Parraga I., Maria-Cervantes A., Delgado M.J., Alvarez-Rogel J. Storage of organic carbon, nitrogen and phosphorus in the soil-plant system of Phragmites australis stands from a eutrophicated Mediterranean salt marsh. Geoderma 2012, 185:61-72.
21. Gorham E. Northern peatlands: role in the carbon cycle and probable responses to climatic warming. Ecological Applications 1991, 1:182-195.
22. Guo H.Q., Noormets A., Zhao B., Chen J.Q., Sun G., Gu Y.J., Li B., Chen J.K. Tidal effects on net ecosystem exchange of carbon in an estuarine wetland. Agricultural and Forest Meteorology 2009, 149:1820-1828.
23. Hirota M., Tang Y.H., Hu Q.W., Hirata S., Kato T., Mo W.H., Cao G.M., Mariko S. Carbon dioxide dynamics and controls in a deep-water wetland on the Qinghai-Tibetan Plateau. Ecosystems 2006, 9:673-688.
24. 2 fixation by nonphotosynthetic microbial community without hydrogen. Environmental Science & Technology 2010, 44:6364-6370.
25. Hu Y., Li Y.L., Wang L., Tang Y.S., Chen J.H., Fu X.H., Le Y.Q., Wu J.H. Variability of soil organic carbon reservation capability between coastal salt marsh and riverside freshwater wetland in Chongming Dongtan and its microbial mechanism. Journal of Environmental Sciences 2012, 24:1053-1063.
26. Huang H.M., Zhang L.Q. Astudy of the population dynamics of Spartina alterniflora at Jiuduansha shoals, Shanghai, China. Ecological Engineering 2007, 29:164-172.
27. Janssen P.H. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Applied and Environmental Microbiology 2006, 72:1719-1728.
28. Kirwan M.L., Mudd S.M. Response of salt-marsh carbon accumulation to climate change. Nature 2012, 489:550-553.
29. Kraigher B., Stres B., Hacin J., Ausec L., Mahne I., van Elsas J.D., Mandic-Mulec I. Microbial activity and community structure in two drained fen soils in the Ljubljana Marsh. Soil Biology & Biochemistry 2006, 38:2762-2771.
30. Lal R. Soil carbon sequestration impacts on global climate change and food security. Science 2004, 304:1623-1627.
31. Li Y.L., Wang L., Zhang W.Q., Zhang S.P., Wang H.L., Fu X.H., Le Y.Q. Variability of soil carbon sequestration capability and microbial activity of different types of salt marsh soils at Chongming Dongtan. Ecological Engineering 2010, 36:1754-1760.
32. Li Y.L., Wang L., Zhang W.Q., Wang H.L., Fu X.H., Le Y.Q. The variability of soil microbial community composition of different types of tidal wetland in Chongming Dongtan and its effect on soil microbial respiration. Ecological Engineering 2011, 37:1276-1282.
33. Mukhopadhyay S., Joy V.C. Influence of leaf litter types on microbial functions and nutrient status of soil: ecological suitability of forest trees for afforestation in tropical laterite wastelands. Soil Biology & Biochemistry 2010, 42:2306-2315.
34. Mullen R.W., Thomason W.E., Raun W.R. Estimated increase in atmospheric carbon dioxide due to worldwide decrease in soil organic matter. Communications in soil Science and Plant Analysis 1999, 30:1713-1719.
35. Muntyan M.S., Bloch D.A., Dinarieva T.Y., Drachev L.A., Netrusov A.I. Two o-type oxidases in Methylobacillus flagellatum KT. Biochemical and Biophysical Research 1994, 204:428-435.
36. Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 1993, 59:695-700.
37. Nakatsu T., Ichiyama S., Hiratake J., Saldanha A., Kobashi N., Sakata K., Kato H. Structural basis for the spectral difference in luciferase bioluminescence. Nature 2006, 440:372-376.
38. Nielsen U.N., Ayres E., Wall D.H., Bardgett R.D. Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity-function relationships. European Journal of Soil Science 2011, 62:105-116.
39. Palomo L., Niell F.X. Primary production and nutrient budgets of Sarcocornia perennis ssp. alpini (Lag.) Castroviejo in the salt marsh of the Palmones River estuary (Southern Spain). Aquatic Botany 2009, 91:130-136.
40. Pennock D., Yates T., Braidek J. Soil sampling designs. Soil Sampling and Methods of Analysis 2007, 1-14. CRC Press, Boca Raton. M.R. Carter, E.G. Gregorich (Eds.).
41. Qiao J.L., Wang L., Tang Y.S., Hu Y.H., Jia J.W. Distribution and characteristics of total petroleum hydrocarbons in Jiuduansha tidal wetland and their potential impact on soil microbial respiration. Journal of Environmental Science and Health, Part A. Toxic/Hazardous Substances and Environmental Engineering 2012, 47:319-325.
42. Rastogi G., Muppidi G., Gurram R., Adhikari A., Bischoff K., Hughes S., Apel W., Bang S., Dixon D., Sani R. Isolation and characterization of cellulose-degrading bacteria from the deep subsurface of the Homestake gold mine, Lead, South Dakota, USA. Journal of Industrial Microbiology & Biotechnology 2009, 36:585-598.
43. Rocker D., Brinkhoff T., Gruner N., Dogs M., Simon M. Composition of humic acid-degrading estuarine and marine bacterial communities. FEMS Microbiology Ecology 2012, 80:45-63.
44. Sato K., Kato Y., Taguchi G., Nogawa M., Yokota A., Shimosaka M. Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium belonging to Betaproteobacteria. Journal of General and Applied Microbiology 2009, 55:147-153.
45. Saviozzi A., Cardelli R., Di Puccio R. Impact of salinity on soil biological activities: a laboratory experiment. Communications in soil Science and Plant Analysis 2011, 42:358-367.
46. Siddikee M.A., Tipayno S.C., Kim K., Chung J., Sa T. Influence of varying degree of salinity-sodicity stress on enzyme activities and bacterial populations of coastal soils of Yellow Sea, South Korea. Journal of Microbiology and Biotechnology 2011, 21:341-346.
47. Singh B.K., Bardgett R.D., Smith P., Reay D.S. Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology 2010, 8:779-790.
48. Six J., Frey S.D., Thiet R.K., Batten K.M. Bacterial and fungal contributions to carbon sequestration in agroecosystems. Soil Science Society of America Journal 2006, 70:555-569.
49. Strom E.V., Dinarieva T.Y., Netrusov A.I. Methylobacillus flagellatus KT contains a novel cbo-type cytochrome oxidase. FEBS Letters 2001, 505:109-112.
50. Tang X.M., Xie G.J., Shao K.Q., Sai B., Chen Y.G., Gao G. Influence of salinity on the bacterial community composition in Lake Bosten, a large oligosaline lake in arid northwestern China. Applied and Environmental Microbiology 2012, 78:4748-4751.
51. Tang Y.S., Wang L., Jia J.W., Fu X.H., Le Y.Q., Chen X.Z., Sun Y. Response of soil microbial community in Jiuduansha wetland to different successional stages and its implications for soil microbial respiration and carbon turnover. Soil Biology & Biochemistry 2011, 43:638-646.
52. 2 concentration, temperature and pH on dehydrogenase activity in soil. Plant and Soil 1984, 77:285-293.
53. Tripathi S., Kumari S., Chakraborty A., Gupta A., Chakrabarti K., Bandyapadhyay B.K. Microbial biomass and its activities in salt-affected coastal soils. Biology and Fertility of Soils 2006, 42:273-277.
54. Wang Q.K., Xiao F.M., He T.X., Wang S.L. Responses of labile soil organic carbon and enzyme activity in mineral soils to forest conversion in the subtropics. Annals of Forest Science 2013, 70:579-587.
55. Williams T.J., Lefevre C.T., Zhao W.D., Beveridge T.J., Bazylinski D.A. Magnetospira thiophila gen. nov., sp. nov., a marine magnetotactic bacterium that represents a novel lineage within the Rhodospirillaceae (Alphaproteobacteria). International Journal of Systematic and Evolutionary Microbiology 2012, 62:2443-2450.
56. Yan Y., Zhao B., Chen J.Q., Guo H.Q., Gu Y.J., Wu Q.H., Li B. Closing the carbon budget of estuarine wetlands with tower-based measurements and MODIS time series. Global Change Biology 2008, 14:1690-1702.
57. Yang H.C., Im W.T., An D.S., Park W.S., Kim I.S., Lee S.T. Silvimonas terrae gen. nov., sp. nov., a novel chitin-degrading facultative anaerobe belonging to the 'Betaproteobacteria'. International Journal of Systematic and Evolutionary Microbiology 2005, 55:2329-2332.
58. Yang Y.X., Liu C.E., Yang Y., Li K. Distribution characteristics and seasonal dynamics of wetland plant N, P, and K in lower shoal of Jiuduansha at Yangtze River estuary. Shengtaixue Zazhi 2010, 29:1277-1288. (in Chinese with English abstract).
59. Zhou S.B., Wang C.J., Yang H.J., Bi D., Li J.H., Wang Y. Stress responses and bioaccumulation of heavy metals by Zizania latifolia and Acorus calamus. Shengtai Xuebao 2007, 27:281-287. (in Chinese with English abstract).
60. Zwart G., Crump B.C., Agterveld M., Hagen F., Han S.K. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquatic Microbial Ecology 2002, 28:141-155.