Molecular cytogenetic analysis of the Vigna species distributed in Korea

Genes and Genomics

Volumn 35, Issue 2, 2013, Pages 257-264

  Choi, Hae Woon ^a   Kim, Min Young ^a   Lee, Sang Hoon ^a   Sultana, Sayeda ^a   Bang, Jae Wook ^a  

^a Chungnam National University   (South Korea)

Author keywords

FISH; GISH; ITS NTS; RRNA gene; Vigna

Indexed keywords

DNA 5S; GENOMIC DNA; PLANT DNA; RIBOSOME DNA; RNA 5.8S; RNA 5S;

ARTICLE; CHROMOSOME ANALYSIS; CHROMOSOME PREPARATION; COWPEA; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; GENETIC DISTANCE; GENOMIC IN SITU HYBRIDIZATION; KOREA; METAPHASE CHROMOSOME; MOLECULAR GENETICS; MUNG BEAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PEA; PHYLOGENY; PLANT CHROMOSOME; PLANT SEED; RICE BEAN; RNA GENE; SOYBEAN; VIGNA;

VIGNA; VIGNA ANGULARIS; VIGNA MUNGO; VIGNA NAKASHIMAE; VIGNA RADIATA VAR. RADIATA; VIGNA UMBELLATA; VIGNA UNGUICULATA; VIGNA VEXILLATA;

EID: 84892782835     PISSN: 19769571     EISSN: 20929293     Source Type: Journal    
DOI: 10.1007/s13258-013-0089-1     Document Type: Article

References (38)

1. Adetula OA, Fatokun CA, Obigbesan G (2005) Centromeric banding pattern of mitotic chromosomes in V. vexillata (TVnu 73). Afr J Biotechnol 5:400-402
2. Ba FS, Pasquet RS, Gepts P (2004) Genetic diversity in cowpea (V. unguiculata (L.) Walp.) as revealed by RAPD markers. Genet Resour Crop Evol 51:539-550
3. Choi HW, Kim JS, Lee SH, Bang JW (2008) Physical mapping by FISH and GISH of rDNA loci and discrimination of genomes A and B in Scilla scilloides complex distributed in Korea. J Plant Biol 51:408-412
4. Choi HW, Koo DH, Bang KH, Paek KY, Seong NS, Bang JW (2009) FISH and GISH analysis of the genomic relationships among Panax species. Genes Genom 31:99-105
5. de Jong H (2003) Visualizing DNA domains and sequences by microscopy: a fifty-year history of molecular cytogenetics. Genome 46:943-946
6. Diouf D, Hilu KW (2005) Microsatellites and RAPD markers to study genetic relationships among cowpea breeding lines and local varieties in Senegal. Genet Resour Crop Evol 52:1057-1067
7. Doi K, Kaga A, Tomooka N, Vaughan DA (2002) Molecular phylogeny of genus Vigna subgenus Ceratotropis based on rDNA ITS and atpB-rbcL intergenic spacer of cpDNA sequences. Genetica 114:129-145
8. Dover G (1982) Molecular drive: cohesive mode of species evolution. Nature 9:111-116
9. Ellis THN, Lee D, Thomas CM, Simpson PR, Cleary WG, Newman MA, Burchan KWG (1988) 5S rRNA genes in Pisum: sequence, long range and chromosomal organization. Mol Genet 214:333-342
10. Fukui K, Kamisugi Y, Sakai F (1994) Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes. Genome 37:105-111
11. Galasso I, Pignone D, Perrino P (1992) Cytotaxonomic studies in Vigna I. General techniques and V. unguiculata C-banding. Caryologia 45:155-161
12. Galasso I, Schumidt T, Pignone D, Heslop-Harrison JS (1995) The molecular cytogenetics of V. unguiculata (L.) Walp: the physical organization and characterization of 18S-5.8S-25S rRNA genes, 5S rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences. Theor Appl Genet 91:928-935
13. Galasso I, Harrison GE, Pignone D, Brandes A, Heslop-Harrison JS (1997) The distribution and organization of Ty1-copia-like reteotransposable elements in the genome of V. unguiculata (L.) Walp. (cowpea) and its relatives. Ann Bot 80:327-333
14. Ge XH, Li ZY (2007) Intra- and intergenomic homology of B-genome chromosomes in trigenomic combinations of the cultivated Brassica species revealed by GISH analysis. Chromosome Res 15:849-861
15. Goel S, Raina SN, Ogihara (2002) Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of nuclear ribosomal DNA in the Phaseolus-Vigna complex. Mol Phylogen Evol 22:1-19
16. Gottlob-McHugh SG, Levesque M, MacKenzie K, Oslon M, Yarosh O, Johnson DA (1990) Organization of the 5S rRNA genes in the soybean Glycine max (L.) Merrill and conservation of the 5S rDNA repeat structure in higher plant. Genome 33:486-494
17. Gründler P, Unfried I, Pascher K, Schweizer D (1991) rDNA intergenic region from Arabidopsis thaliana: structural analysis, intraspecific variation and functional implications. J Mol Biol 221:1209-1222
18. Guerra M, Kenton A, Bennett MD (1996) rDNA sites in mitotic and polytene chromosomes of V. unguiculata (L.) Walp. and Phaseolus coccineus L. revealed by in situ hybridization. Ann Bot 78:157-161
19. Jiang J, Gill BS (2006) Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome 49:1057-1068
20. Kenicer GJ, Kajita T, Pennington RT, Murata J (2005) Systematics and biogeography of Lathyrus (Leguminosae) based on internal transcribed spacer and cpDNA sequence data. Am J Bot 92:1199-1209
21. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparable studies of nucleotide sequences. J Mol Evol 16:111-120
22. Kollipara KP, Singh RJ, Hymowitz T (1997) Phylogenetic and genomic relationship in the genus Glycine wild based on sequences from ITS region of nuclear rDNA. Genome 40:57-68
23. Koo DH, Plaha P, Lim YP, Hur Y, Bang JW (2004) A high resolution karyotype of Brassica rapa ssp. pekinensis revealed by pachytene analysis and multicolor fluorescence in situ hybridization. Theor Appl Genet 109:1346-1352
24. Koo DH, Choi HW, Cho JK, Hur Y, Bang JW (2005) A highresolution karyotype of cucumber (C. sativus L. 'Winter Long') revealed by C-banding, pachytene analysis, and RAPD-aided fluorescence in situ hybridization. Genome 48:534-540
25. Lapitan NLV (1992) Organization and evolution of higher plant genomes. Genome 35:171-181
26. Lee SH, Choi HW, Sung JS, Bang JW (2010) Inter-genomic relationships among three medicinal herbs: cnidium officinale, Ligusticum chuanxiong and Angelica polymorpha. Genes Genom 32:95-101
27. Lim KY, Matyasek R, Kovarik A, Fulnecek J, Leitch AR (2005) Molecular cytogenetics and tandem repeat sequence evolution in the allopolyploid Nicotiana rustica compared with diploid progenitors N paniculata and N undulata Cytogenet Genome Res 109:298-309
28. Ngan F, Shaw P, But P, Wang J (1999) Molecular authentication of Panax species. Phytochemistry 50:787-791
29. Saini A, Jawali N (2009) Molecular evolution of 5S rDNA region in Vigna subgenus Ceratotropis and its phylogenetic implications. Plant Syst Evol 280:187-206
30. Sastri DC, Hilu K, Appels R, Lagudah ES, Playford J, Baum BR (1992) An overview of evolution in plant 5S rDNA. Plant Syst Evol 183:169-181
31. Schwarzacher T, Leitch AR, Bennett MD, Heslop-Harrison JS (1989) In situ localization of parental genomes in a wide hybrid. Ann Bot 64:315-324
32. Sen NK, Bhowal JG (1960) Cytotaxonomy studies on Vigna. Cytologia 25:195-207
33. Sultana S, Lee SH, Bang JW, Choi HW (2010) Physical mapping of rRNA gene loci and inter-specific relationships in wild Lilium distributed in Korea. J Plant Biol 53:433-443
34. Taketa S, Harrison GE, Heslop-Harrison JS (1999) Comparative physical mapping of the 5S and 18S-25S rDNA in nine wild Hordeum species and cytotypes. Theor Appl Genet 98:1-9
35. Verdcourt B (1970) Studies in the Leguminosae-Papilionoideae for the 'Flora of Tropical East Africa' IV. Kew Bull 24:507-569
36. Vijaykumar A, Saini A, Jawali N (2011) Molecular characterization of intergenic spacer region of 5S ribosomal RNA genes in subgenus Vigna: extensive hybridization among V. unguiculata subspecies. Plant Syst Evol 294:38-55
37. Xu P, Wu X, Wang B, Liu Y, Qin D, Ehler JD, Close TJ, Hu T, Lu Z, Li G (2010) Development and polymorphism of V. unguiculata ssp. unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (V. unguiculata ssp. sesquipedalis (L.) Verdc.). Mol Breed 25:675-684
38. Yoon MS, Lee J, Kim CY, Baek HJ (2007) Genetic relationships among cultivated and wild V. angularis (Willd.) Ohwi et Ohashi and relatives from Korea based on AFLP markers. Genet Resour Crop Evol 54:875-883