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Volumn 2014, Issue , 2014, Pages

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; COMPUTER PROGRAM; GENETIC DATABASE; GENETIC VARIABILITY; GENETICS; HUMAN; INTERNET; MOLECULAR GENETICS; MYCOBACTERIUM TUBERCULOSIS; STATISTICS;

EID: 84892738058     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bat083     Document Type: Article
Times cited : (24)

References (18)
  • 1
    • 84859495671 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis-heterogeneity revealed through whole genome sequencing
    • Ford,C., Yusim,K., Ioerger,T. et al. (2012) Mycobacterium tuberculosis-heterogeneity revealed through whole genome sequencing. Tuberculosis(Edinb.), 92, 194-201.
    • (2012) Tuberculosis(Edinb.) , vol.92 , pp. 194-201
    • Ford, C.1    Yusim, K.2    Ioerger, T.3
  • 2
    • 79955460244 scopus 로고    scopus 로고
    • Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
    • Ford,CB., Lin,P.L., Chase,M.R. et al . (2011) Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection. Nat. Genet., 43, 389-499.
    • (2011) Nat. Genet. , vol.43 , pp. 389-499
    • Ford, C.B.1    Lin, P.L.2    Chase, M.R.3
  • 3
    • 77952826773 scopus 로고    scopus 로고
    • Relics of selection in the mycobacterial genome
    • Sassetti,C.M. and Rubin,E.J. (2010) Relics of selection in the mycobacterial genome. Nat. Genet., 42, 476-478.
    • (2010) Nat. Genet. , vol.42 , pp. 476-478
    • Sassetti, C.M.1    Rubin, E.J.2
  • 4
    • 77954407500 scopus 로고    scopus 로고
    • Variation among genome sequences of H37Rv strains of mycobacterium tuberculosis from multiple laboratories
    • Ioerger,T.R., Feng,Y., Ganesula,K. et al. (2010) Variation among genome sequences of H37Rv strains of mycobacterium tuberculosis from multiple laboratories. J. Bacteriol., 192, 3645-3653.
    • (2010) J. Bacteriol. , vol.192 , pp. 3645-3653
    • Ioerger, T.R.1    Feng, Y.2    Ganesula, K.3
  • 5
    • 70349668297 scopus 로고    scopus 로고
    • Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing
    • Qi,W., Käser,M., Röltgen,K. et al. (2009) Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing. PLoS Pathog., 5, e1000580.
    • (2009) PLoS Pathog. , vol.5
    • Qi, W.1    Käser, M.2    Röltgen, K.3
  • 6
    • 70350719440 scopus 로고    scopus 로고
    • Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints
    • Niemann,S., Käser,M., Röltgen,K. et al . (2009) Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints. PLoS One, 4, e7407.
    • (2009) PLoS One , vol.4
    • Niemann, S.1    Käser, M.2    Röltgen, K.3
  • 7
    • 84874531408 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database
    • Stucki,D. and Gagneux,S. (2013) Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database. Tuberculosis, 93, 30-39.
    • (2013) Tuberculosis , vol.93 , pp. 30-39
    • Stucki, D.1    Gagneux, S.2
  • 8
    • 84857372037 scopus 로고    scopus 로고
    • MTCID: A database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis
    • Bharti,R., Das,R., Sharma,P. et al. (2012) MTCID: a database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis. Tuberculosis, 92, 166-172.
    • (2012) Tuberculosis , vol.92 , pp. 166-172
    • Bharti, R.1    Das, R.2    Sharma, P.3
  • 9
    • 49949119715 scopus 로고    scopus 로고
    • MGDD: Mycobacterium tuberculosis genome divergence database
    • Vishnoi,A., Srivastava,A., Roy,R. et al. (2008) MGDD: mycobacterium tuberculosis genome divergence database. BMC Genomics, 9, 373.
    • (2008) BMC Genomics , vol.9 , pp. 373
    • Vishnoi, A.1    Srivastava, A.2    Roy, R.3
  • 10
    • 0035173378 scopus 로고    scopus 로고
    • dbSNP: The NCBI database of genetic variation
    • Sherry,S.T., Ward,M.H., Kholodov,M. et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res., 29, 308-311.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 308-311
    • Sherry, S.T.1    Ward, M.H.2    Kholodov, M.3
  • 11
    • 58149182735 scopus 로고    scopus 로고
    • TB database: An integrated platform for tuberculosis research
    • Reddy,T.B.K., Riley,R., Wymore,F. et al. (2009) TB database: an integrated platform for tuberculosis research. Nucleic Acids Res., 37, D499-D508.
    • (2009) Nucleic Acids Res. , vol.37
    • Reddy, T.B.K.1    Riley, R.2    Wymore, F.3
  • 12
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li,H., Ruan,J. and Durbin,R. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 13
    • 84884995578 scopus 로고    scopus 로고
    • Out-of-africa migration and neolithic coexpansion of mycobacterium tuberculosis with modern humans
    • Comas,I., Coscolla,M., Luo,T. et al. (2013) Out-of-africa migration and neolithic coexpansion of mycobacterium tuberculosis with modern humans. Nat. Genet., 45, 1176-1182.
    • (2013) Nat. Genet. , vol.45 , pp. 1176-1182
    • Comas, I.1    Coscolla, M.2    Luo, T.3
  • 14
    • 61449239026 scopus 로고    scopus 로고
    • Tuberculosis drug resistance mutation database
    • Sandgren,A., Strong,M., Muthukrishnan,P. et al. (2009) Tuberculosis drug resistance mutation database. PLoS Med., 6, e2.
    • (2009) PLoS Med. , vol.6
    • Sandgren, A.1    Strong, M.2    Muthukrishnan, P.3
  • 15
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang,K., Li,M. and Hakonarson,H. (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res., 38, e164-e164.
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 16
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • Ng,P.C. and Henikoff,S. (2001) Predicting deleterious amino acid substitutions. Genome Res., 11, 863-874.
    • (2001) Genome Res. , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 17
    • 84997765026 scopus 로고    scopus 로고
    • Draft genome sequence of a clinical isolate of multidrug-resistant mycobacterium tuberculosis east african indian strain OSDD271
    • Karuthedath Vellarikkal,S., Patowary,A., Singh,M. et al. (2013) Draft genome sequence of a clinical isolate of multidrug-resistant mycobacterium tuberculosis east african indian strain OSDD271. Genome Announc., 1, e00541-13.
    • (2013) Genome Announc. , vol.1
    • Karuthedath Vellarikkal, S.1    Patowary, A.2    Singh, M.3
  • 18
    • 70350749442 scopus 로고    scopus 로고
    • TBrowse: An integrative genomics map of mycobacterium tuberculosis
    • Bhardwaj,A., Bhartiya,D., Kumar,N. et al. (2009) TBrowse: an integrative genomics map of mycobacterium tuberculosis. Tuberculosis, 89, 386-387.
    • (2009) Tuberculosis , vol.89 , pp. 386-387
    • Bhardwaj, A.1    Bhartiya, D.2    Kumar, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.