-
1
-
-
30744460678
-
Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: Insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
-
I. Filliol, A.S. Motiwala, and M. Cavatore Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set J Bacteriol 188 2 2006 759 772
-
(2006)
J Bacteriol
, vol.188
, Issue.2
, pp. 759-772
-
-
Filliol, I.1
Motiwala, A.S.2
Cavatore, M.3
-
2
-
-
58149174244
-
High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
-
e311
-
R. Hershberg, M. Lipatov, and P.M. Small High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography Plos Biol. 6 12 2008 e311
-
(2008)
Plos Biol.
, vol.6
, Issue.12
-
-
Hershberg, R.1
Lipatov, M.2
Small, P.M.3
-
3
-
-
70450187158
-
Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa
-
e7778
-
T.R. Ioerger, S. Koo, and E.-G. No Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa PLoS ONE 4 11 2009 e7778
-
(2009)
PLoS ONE
, vol.4
, Issue.11
-
-
Ioerger, T.R.1
Koo, S.2
No, E.-G.3
-
4
-
-
78649321465
-
The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa
-
T.R. Ioerger, Y. Feng, and X. Chen The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa BMC Genom 11 1 2010 670
-
(2010)
BMC Genom
, vol.11
, Issue.1
, pp. 670
-
-
Ioerger, T.R.1
Feng, Y.2
Chen, X.3
-
5
-
-
79951995822
-
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
-
J.L. Gardy, J.C. Johnston, and S.J.H. Sui Whole-genome sequencing and social-network analysis of a tuberculosis outbreak N Engl J Med 364 8 2011 730 739
-
(2011)
N Engl J Med
, vol.364
, Issue.8
, pp. 730-739
-
-
Gardy, J.L.1
Johnston, J.C.2
Sui, S.J.H.3
-
6
-
-
79955460244
-
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
-
C.B. Ford, P.L. Lin, and M.R. Chase Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection Nat Genet. 43 5 2011 482 486
-
(2011)
Nat Genet.
, vol.43
, Issue.5
, pp. 482-486
-
-
Ford, C.B.1
Lin, P.L.2
Chase, M.R.3
-
7
-
-
79952188717
-
Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background
-
N.J. Saunders, U.H. Trivedi, and M.L. Thomson Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background J. Infect. 62 3 2011 212 217
-
(2011)
J. Infect.
, vol.62
, Issue.3
, pp. 212-217
-
-
Saunders, N.J.1
Trivedi, U.H.2
Thomson, M.L.3
-
8
-
-
79751501179
-
Molecular tools for Mycobacterium tuberculosis genotyping
-
J.C. Rozo-Anaya, and W. Ribón Molecular tools for Mycobacterium tuberculosis genotyping Rev Salud Publica (Bogota) 12 3 2010 510 521
-
(2010)
Rev Salud Publica (Bogota)
, vol.12
, Issue.3
, pp. 510-521
-
-
Rozo-Anaya, J.C.1
Ribón, W.2
-
9
-
-
70350719440
-
Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints
-
e7407
-
S. Niemann, C.U. Köser, and S. Gagneux Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints PLoS ONE 4 10 2009 e7407
-
(2009)
PLoS ONE
, vol.4
, Issue.10
-
-
Niemann, S.1
Köser, C.U.2
Gagneux, S.3
-
11
-
-
3843050332
-
Analysis of clonal composition of Mycobacterium tuberculosis isolates in primary infections in children
-
D. García de Viedma, M. Marín, M.J. Ruiz, and E. Bouza Analysis of clonal composition of Mycobacterium tuberculosis isolates in primary infections in children J Clin Microbiol 42 8 2004 3415 3418
-
(2004)
J Clin Microbiol
, vol.42
, Issue.8
, pp. 3415-3418
-
-
García De Viedma, D.1
Marín, M.2
Ruiz, M.J.3
Bouza, E.4
-
12
-
-
34648854481
-
Rapid clonal analysis of recurrent tuberculosis by direct MIRU-VNTR typing on stored isolates
-
A. Martín, M. Herránz, M. Serrano, E. Bouza, and D. de Viedma Rapid clonal analysis of recurrent tuberculosis by direct MIRU-VNTR typing on stored isolates BMC Microbiol 7 1 2007 73
-
(2007)
BMC Microbiol
, vol.7
, Issue.1
, pp. 73
-
-
Martín, A.1
Herránz, M.2
Serrano, M.3
Bouza, E.4
De Viedma, D.5
-
13
-
-
0035004973
-
Molecular epidemiology study of exogenous reinfection in an area with a low incidence of tuberculosis
-
A. Bandera, A. Gori, and L. Catozzi Molecular epidemiology study of exogenous reinfection in an area with a low incidence of tuberculosis J Clin Microbiol 39 6 2001 2213 2218
-
(2001)
J Clin Microbiol
, vol.39
, Issue.6
, pp. 2213-2218
-
-
Bandera, A.1
Gori, A.2
Catozzi, L.3
-
14
-
-
0035482795
-
Epidemiological evidence of the spread of a Mycobacterium tuberculosis strain of the Beijing genotype on Gran Canaria Island
-
J.A. Caminero, M.J. Pena, and M.I. Campos-Herrero Epidemiological evidence of the spread of a Mycobacterium tuberculosis strain of the Beijing genotype on Gran Canaria Island Am J Respir Crit Care Med 164 7 2001 1165 1170
-
(2001)
Am J Respir Crit Care Med
, vol.164
, Issue.7
, pp. 1165-1170
-
-
Caminero, J.A.1
Pena, M.J.2
Campos-Herrero, M.I.3
-
15
-
-
0032990490
-
Evidence of exogenous reinfection and mixed infection with more than one strain of Mycobacterium tuberculosis among Spanish HIV-infected inmates
-
F. Chaves, F. Dronda, M. Alonso-Sanz, and A.R. Noriega Evidence of exogenous reinfection and mixed infection with more than one strain of Mycobacterium tuberculosis among Spanish HIV-infected inmates AIDS 13 5 1999 615 620
-
(1999)
AIDS
, vol.13
, Issue.5
, pp. 615-620
-
-
Chaves, F.1
Dronda, F.2
Alonso-Sanz, M.3
Noriega, A.R.4
-
16
-
-
0037443084
-
Polyclonal and compartmentalized infection by Mycobacterium tuberculosis in patients with both respiratory and extrarespiratory involvement
-
D. García de Viedma, M. Marín, M.J. Ruiz Serrano, L. Alcalá, and E. Bouza Polyclonal and compartmentalized infection by Mycobacterium tuberculosis in patients with both respiratory and extrarespiratory involvement J Infect Dis 187 4 2003 695 699
-
(2003)
J Infect Dis
, vol.187
, Issue.4
, pp. 695-699
-
-
García De Viedma, D.1
Marín, M.2
Ruiz Serrano, M.J.3
Alcalá, L.4
Bouza, E.5
-
17
-
-
0022878041
-
Exogenous reinfection with tuberculosis in a shelter for the homeless
-
E. Nardell, B. McInnis, B. Thomas, and S. Weidhaas Exogenous reinfection with tuberculosis in a shelter for the homeless N Engl J Med 315 25 1986 1570 1575
-
(1986)
N Engl J Med
, vol.315
, Issue.25
, pp. 1570-1575
-
-
Nardell, E.1
McInnis, B.2
Thomas, B.3
Weidhaas, S.4
-
18
-
-
0027411682
-
Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in patients with advanced HIV infection
-
P.M. Small, R.W. Shafer, and P.C. Hopewell Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in patients with advanced HIV infection N Engl J Med 328 16 1993 1137 1144
-
(1993)
N Engl J Med
, vol.328
, Issue.16
, pp. 1137-1144
-
-
Small, P.M.1
Shafer, R.W.2
Hopewell, P.C.3
-
19
-
-
66749130814
-
High diversity of Mycobacterium tuberculosis genotypes in South Africa and preponderance of mixed infections among ST53 isolates
-
R. Stavrum, M. Mphahlele, and K. Ovres High diversity of Mycobacterium tuberculosis genotypes in South Africa and preponderance of mixed infections among ST53 isolates J Clin Microbiol 47 6 2009 1848 1856
-
(2009)
J Clin Microbiol
, vol.47
, Issue.6
, pp. 1848-1856
-
-
Stavrum, R.1
Mphahlele, M.2
Ovres, K.3
-
20
-
-
10744233688
-
Mycobacterium tuberculosis growth at the cavity surface: A microenvironment with failed immunity
-
G. Kaplan, F.A. Post, and A.L. Moreira Mycobacterium tuberculosis growth at the cavity surface: a microenvironment with failed immunity Infect Immun 71 12 2003 7099 7108
-
(2003)
Infect Immun
, vol.71
, Issue.12
, pp. 7099-7108
-
-
Kaplan, G.1
Post, F.A.2
Moreira, A.L.3
-
21
-
-
0031024555
-
Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis
-
G.S. Turett, B.A. Fazal, and J.E. Justman Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis Clin Infect Dis 24 3 1997 513 514
-
(1997)
Clin Infect Dis
, vol.24
, Issue.3
, pp. 513-514
-
-
Turett, G.S.1
Fazal, B.A.2
Justman, J.E.3
-
22
-
-
0028241690
-
Superinfection with rifampin-isoniazid-streptomycin-ethambutol (RISE)-resistant tuberculosis in three patients with AIDS: Confirmation by polymerase chain reaction fingerprinting
-
D.L. Horn, D. Hewlett, and W.H. Haas Superinfection with rifampin-isoniazid-streptomycin-ethambutol (RISE)-resistant tuberculosis in three patients with AIDS: confirmation by polymerase chain reaction fingerprinting Ann Intern Med 121 2 1994 115 116
-
(1994)
Ann Intern Med
, vol.121
, Issue.2
, pp. 115-116
-
-
Horn, D.L.1
Hewlett, D.2
Haas, W.H.3
-
23
-
-
78650411518
-
Preferential infection and depletion of Mycobacterium tuberculosis-specific CD4 T cells after HIV-1 infection
-
C. Geldmacher, N. Ngwenyama, and A. Schuetz Preferential infection and depletion of Mycobacterium tuberculosis-specific CD4 T cells after HIV-1 infection J Exp Med 207 13 2010 2869 2881
-
(2010)
J Exp Med
, vol.207
, Issue.13
, pp. 2869-2881
-
-
Geldmacher, C.1
Ngwenyama, N.2
Schuetz, A.3
-
24
-
-
77952841173
-
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
-
I. Comas, J. Chakravartti, and P.M. Small Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved Nat Genet 42 6 2010 498 503
-
(2010)
Nat Genet
, vol.42
, Issue.6
, pp. 498-503
-
-
Comas, I.1
Chakravartti, J.2
Small, P.M.3
-
25
-
-
45849114744
-
Meeting report: NIH workshop on the tuberculosis immune epitope database
-
J.D. Ernst, D.M. Lewinsohn, and S. Behar Meeting report: NIH workshop on the tuberculosis immune epitope database Tuberculosis (Edinburgh, Scotland) vol. 88 2008 366 370
-
(2008)
Tuberculosis (Edinburgh, Scotland)
, vol.88
, pp. 366-370
-
-
Ernst, J.D.1
Lewinsohn, D.M.2
Behar, S.3
-
26
-
-
0035089867
-
The nature and consequence of genetic variability within Mycobacterium tuberculosis
-
M. Kato-Maeda, P.J. Bifani, B.N. Kreiswirth, and P.M. Small The nature and consequence of genetic variability within Mycobacterium tuberculosis J Clin Invest 107 5 2001 533 537
-
(2001)
J Clin Invest
, vol.107
, Issue.5
, pp. 533-537
-
-
Kato-Maeda, M.1
Bifani, P.J.2
Kreiswirth, B.N.3
Small, P.M.4
-
27
-
-
0037133653
-
A new evolutionary scenario for the Mycobacterium tuberculosis complex
-
R. Brosch, S.V. Gordon, and M. Marmiesse A new evolutionary scenario for the Mycobacterium tuberculosis complex Proc Natl Acad Sci U S A 99 6 2002 3684 3689
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.6
, pp. 3684-3689
-
-
Brosch, R.1
Gordon, S.V.2
Marmiesse, M.3
-
28
-
-
11144356962
-
Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains
-
A.G. Tsolaki, A.E. Hirsh, and K. Deriemer Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains Proc Natl Acad Sci U S A 101 14 2004 4865 4870
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.14
, pp. 4865-4870
-
-
Tsolaki, A.G.1
Hirsh, A.E.2
Deriemer, K.3
-
29
-
-
80855141176
-
Comparative genomics of esx genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation
-
S. Uplekar, B. Heym, V. Friocourt, J. Rougemont, and S.T. Cole Comparative genomics of esx genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation Infect Immun 79 10 2011 4042 4049
-
(2011)
Infect Immun
, vol.79
, Issue.10
, pp. 4042-4049
-
-
Uplekar, S.1
Heym, B.2
Friocourt, V.3
Rougemont, J.4
Cole, S.T.5
-
30
-
-
77956509403
-
Massive gene duplication event among clinical isolates of the Mycobacterium tuberculosis W/Beijing family
-
P. Domenech, G.S. Kolly, L. Leon-Solis, A. Fallow, and M.B. Reed Massive gene duplication event among clinical isolates of the Mycobacterium tuberculosis W/Beijing family J Bacteriol 192 18 2010 4562 4570
-
(2010)
J Bacteriol
, vol.192
, Issue.18
, pp. 4562-4570
-
-
Domenech, P.1
Kolly, G.S.2
Leon-Solis, L.3
Fallow, A.4
Reed, M.B.5
-
31
-
-
2542475060
-
Two sensor kinases contribute to the hypoxic response of Mycobacterium tuberculosis
-
D.M. Roberts, R.P. Liao, G. Wisedchaisri, W.G.J. Hol, and D.R. Sherman Two sensor kinases contribute to the hypoxic response of Mycobacterium tuberculosis J Biol Chem 279 22 2004 23082 23087
-
(2004)
J Biol Chem
, vol.279
, Issue.22
, pp. 23082-23087
-
-
Roberts, D.M.1
Liao, R.P.2
Wisedchaisri, G.3
Hol, W.G.J.4
Sherman, D.R.5
-
33
-
-
58149218240
-
High-resolution mapping of copy-number alterations with massively parallel sequencing
-
D.Y. Chiang, G. Getz, and D.B. Jaffe High-resolution mapping of copy-number alterations with massively parallel sequencing Nat Meth 6 1 2009 99 103
-
(2009)
Nat Meth
, vol.6
, Issue.1
, pp. 99-103
-
-
Chiang, D.Y.1
Getz, G.2
Jaffe, D.B.3
-
34
-
-
0034568798
-
Evidence for symmetric chromosomal inversions around the replication origin in bacteria
-
RESEARCH0011.1-0011.9
-
J.A. Eisen, J.F. Heidelberg, O. White, and S.L. Salzberg Evidence for symmetric chromosomal inversions around the replication origin in bacteria Genome Biol 1 6 2000 RESEARCH0011.1-0011.9
-
(2000)
Genome Biol
, vol.1
, Issue.6
-
-
Eisen, J.A.1
Heidelberg, J.F.2
White, O.3
Salzberg, S.L.4
-
35
-
-
16644381328
-
Comparative genome assembly
-
M. Pop, A. Phillippy, A.L. Delcher, and S.L. Salzberg Comparative genome assembly Brief Bioinformatics 5 3 2004 237 248
-
(2004)
Brief Bioinformatics
, vol.5
, Issue.3
, pp. 237-248
-
-
Pop, M.1
Phillippy, A.2
Delcher, A.L.3
Salzberg, S.L.4
|