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Volumn 30, Issue 2, 2014, Pages 287-288

HPC-CLUST: Distributed hierarchical clustering for large sets of nucleotide sequences

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S;

EID: 84892719927     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt657     Document Type: Article
Times cited : (46)

References (8)
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  • 2
    • 0002546287 scopus 로고
    • Efficient algorithms for agglomerative hierarchical clustering methods
    • Day, W. and Edelsbrunner, H. (1984) Efficient algorithms for agglomerative hierarchical clustering methods. J. Classif., 1, 7-24.
    • (1984) J. Classif. , vol.1 , pp. 7-24
    • Day, W.1    Edelsbrunner, H.2
  • 3
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    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
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    • Edgar, R.C.1
  • 4
    • 33745634395 scopus 로고    scopus 로고
    • CD-HIT: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. and Godzik, A. (2006) CD-HIT: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 5
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki, E.P. et al. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics, 25, 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1
  • 6
    • 72949107142 scopus 로고    scopus 로고
    • Introducing MOTHUR: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D. et al. (2009) Introducing MOTHUR: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol., 75, 7537-7541.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 7
    • 67249096511 scopus 로고    scopus 로고
    • ESPRIT: Estimating species richness using large collections of 16S rRNA pyrosequences
    • Sun, Y. et al. (2009) ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res., 37, e76.
    • (2009) Nucleic Acids Res. , vol.37
    • Sun, Y.1
  • 8
    • 84862928738 scopus 로고    scopus 로고
    • A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
    • Sun, Y. et al. (2012) A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis. Brief. Bioinform., 13, 107-121.
    • (2012) Brief. Bioinform. , vol.13 , pp. 107-121
    • Sun, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.