The use of MALDI-TOF ICMS as an alternative tool for Trichophyton rubrum identification and typing

Enfermedades Infecciosas y Microbiologia Clinica

Volumn 32, Issue 1, 2014, Pages 11-17

  Pereira, Leonel ^a   Dias, Nicolina ^a   Santos, Cledir ^a   Lima, Nelson ^a  

^a UNIVERSITY OF MINHO   (Portugal)

Author keywords

Identification; MALDI TOF ICMS; Molecular biology; Proteomics; Trichophyton rubrum and typing

Indexed keywords

FUNGAL DNA; RIBOSOME DNA; INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2;

ACCURACY; ARTICLE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; POLYMERASE CHAIN REACTION; TRICHOPHYTON RUBRUM; CONTROLLED STUDY; FUNGAL STRAIN; MOLECULAR TYPING; SEQUENCE ANALYSIS; CLASSIFICATION; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; TRICHOPHYTON;

HUMANS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRICHOPHYTON;

EID: 84892623757     PISSN: 0213005X     EISSN: 15781852     Source Type: Journal    
DOI: 10.1016/j.eimc.2013.01.009     Document Type: Article

References (33)

1. D. Liu, L. Pearce, G. Lilley, S. Coloe, R. Baird, and J. Pedersen PCR identification of dermatophyte fungi Trichophyton rubrum, T. soudanense and T. gourvilii J Med Microbiol 51 2002 117 122
2. L.C. Baeza, M.T. Matsumoto, A.M. Almeida, and M.J. Mendes-Giannini Strain differentiation of Trichophyton rubrum by randomly amplified polymorphic DNA and analysis of rDNA nontranscribed spacer J Med Microbiol 55 2006 429 436
3. T. Kanbe Molecular approaches in the diagnosis of dermatophytosis Mycopathologia 166 2008 307 317
4. 4 primer: utility for rapid identification of dermatophyte species and strains J Clin Microbiol 46 2008 2641 2645
5. S.A. Balajee, L. Sigler, and M.E. Brandt DNA and the classical way: identification of medically important molds in the 21st century Med Mycol 45 2007 475 490
6. Y. Gräser, J. Scott, and R. Summerbell The new species concept in dermatophytes - a polyphasic approach Mycopathologia 166 2008 239 256
7. Y. Gräser, M. el Fari, W. Presber, W. Sterry, and H.J. Tietz Identification of common dermatophytes (Trichophyton, Microsporum, Epidermophyton) using polymerase chain reactions Br J Dermatol 138 1998 576 582
8. F. Seyfarth, M. Ziemer, Y. Gräser, P. Elsner, and U.C. Hipler Widespread tinea corporis caused by Trichophyton rubrum with non-typical cultural characteristics - diagnosis via PCR Mycoses 50 Suppl. 2 2007 26 30
9. C.J. Jackson, R.C. Barton, S.L. Kelly, and E.G. Evans Strain identification of Trichophyton rubrum by specific amplification of subrepeat elements in the ribosomal DNA nontranscribed spacer J Clin Microbiol 38 2000 4527 4534
10. Y. Graser, A.F. Kuijpers, W. Presber, and G.S. de Hoog Molecular taxonomy of the Trichophyton rubrum complex J Clin Microbiol 38 2000 3329 3336
11. N.D. Padliya, and B. Cooper Mass spectrometry-based proteomics for the detection of plant pathogens Proteomics 6 2006 4069 4075
12. A. Bizzini, and G. Greub Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification Clin Microbiol Infect 16 2010 1614 1619
13. S. De Respinis, G. Vogel, C. Benagli, M. Tonolla, O. Petrini, and G.J. Samuels MALDI-TOF MS of Trichoderma: a model system for the identification of microfungi Mycol Prog 9 2010 79 100
14. C. Santos, R.R. Paterson, A. Venâncio, and N. Lima Filamentous fungal characterizations by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry J Appl Microbiol 108 2010 375 385
15. M. Erhard, U.C. Hipler, A. Burmester, A.A. Brakhage, and J. Wostemeyer Identification of dermatophyte species causing onychomycosis and tinea pedis by MALDI-TOF mass spectrometry Exp Dermatol 17 2008 356 361
16. E.S. Theel, L. Hall, J. Mandrekar, and N.L. Wengenack Dermatophyte identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry J Clin Microbiol 49 2011 4067 4071
17. P. Nenoff, M. Erhard, J.C. Simon, G.K. Muylowa, J. Herrmann, and W. Rataj et al. MALDI-TOF mass spectrometry - a rapid method for the identification of dermatophyte species Med Mycol 51 2013 17 24
18. K. Alshawa, J.-L. Beretti, C. Lacroix, M. Feuilhade, B. Dauphin, and G. Quesne et al. Successful identification of clinical dermatophyte and Neoscytalidium species by matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry J Clin Microbiol 50 2012 2277 2281
19. S. de Respinis, M. Tonolla, S. Pranghofer, L. Petrini, O. Petrini, and P.P. Bosshard Identification of dermatophytes by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Med Mycol 2012 10.3109/13693786.2012.746476
20. E. De Carolis, B. Posteraro, C. Lass-Florl, A. Vella, A.R. Florio, and R. Torelli et al. Species identification of Aspergillus, Fusarium and Mucorales with direct surface analysis by matrix-assisted laser desorption ionization time-of-flight mass spectrometry Clin Microbiol Infect 18 2012 475 484
21. J.M. Hettick, B.J. Green, A.D. Buskirk, M.L. Kashon, J.E. Slaven, and E. Janotka et al. Discrimination of Aspergillus isolates at the species and strain level by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprinting Anal Biochem 380 2008 276 281
22. L. Putignani, F. Del Chierico, M. Onori, L. Mancinelli, M. Argentieri, and P. Bernaschi et al. MALDI-TOF mass spectrometry proteomic phenotyping of clinically relevant fungi Mol Biosyst 7 2011 620 629
23. A. Croxatto, G. Prod'hom, and G. Greub Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology FEMS Microbiol Rev 36 2012 380 407
24. T.J. White, T. Bruns, S. Lee, and J. Taylor M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White, PCR protocols a guide to methods and applications 1990 Academic Press San Diego 315 322
25. B. Huey, and J. Hall Hypervariable DNA fingerprinting in Escherichia coli: minisatellite probe from bacteriophage M13 J Bacteriol 171 1989 2528 2532
26. W. Meyer, T.G. Mitchell, E.Z. Freedman, and R. Vilgalys Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans J Clin Microbiol 31 1993 2274 2280
27. H.G. Niesters, W.H. Goessens, J.F. Meis, and W.G. Quint Rapid, polymerase chain reaction-based identification assays for Candida species J Clin Microbiol 31 1993 904 910
28. R. Dieckmann, R. Helmuth, M. Erhard, and B. Malorny Rapid classification and identification of Salmonellae at the species and subspecies levels by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry Appl Environ Microbiol 74 2008 7767 7778
29. H. Liu, Z. Du, J. Wang, and R. Yang Universal sample preparation method for characterization of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry Appl Environ Microbiol 73 2007 1899 1907
30. K. De Bruyne, B. Slabbinck, W. Waegeman, P. Vauterin, B. De Baets, and P. Vandamme Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning Syst Appl Microbiol 34 2011 20 29
31. Y. Gräser, J. Kuhnisch, and W. Presber Molecular markers reveal exclusively clonal reproduction in Trichophyton rubrum J Clin Microbiol 37 1999 3713 3717
32. A.K. Gupta, Y. Kohli, and R.C. Summerbell Variation in restriction fragment length polymorphisms among serial isolates from patients with Trichophyton rubrum infection J Clin Microbiol 39 2001 3260 3266
33. C. Santos, N. Lima, P. Sampaio, and C. Pais Matrix-assisted laser desorption/ionization time-of-flight intact cell mass spectrometry to detect emerging pathogenic Candida species Diagn Microbiol Infect Dis 71 2011 304 308