-
1
-
-
79551677421
-
Reference maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
-
C. Bock, E. Kiskinis, G. Verstappen, H. Gu, G. Boulting, Z.D. Smith, M. Ziller, G.F. Croft, M.W. Amoroso, and D.H. Oakley et al. Reference maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines Cell 144 2011 439 452
-
(2011)
Cell
, vol.144
, pp. 439-452
-
-
Bock, C.1
Kiskinis, E.2
Verstappen, G.3
Gu, H.4
Boulting, G.5
Smith, Z.D.6
Ziller, M.7
Croft, G.F.8
Amoroso, M.W.9
Oakley, D.H.10
-
2
-
-
67649222358
-
Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures
-
M.H. Chin, M.J. Mason, W. Xie, S. Volinia, M. Singer, C. Peterson, G. Ambartsumyan, O. Aimiuwu, L. Richter, and J. Zhang et al. Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures Cell Stem Cell 5 2009 111 123
-
(2009)
Cell Stem Cell
, vol.5
, pp. 111-123
-
-
Chin, M.H.1
Mason, M.J.2
Xie, W.3
Volinia, S.4
Singer, M.5
Peterson, C.6
Ambartsumyan, G.7
Aimiuwu, O.8
Richter, L.9
Zhang, J.10
-
3
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
R.K. Chodavarapu, S. Feng, Y.V. Bernatavichute, P.Y. Chen, H. Stroud, Y. Yu, J.A. Hetzel, F. Kuo, J. Kim, and S.J. Cokus et al. Relationship between nucleosome positioning and DNA methylation Nature 466 2010 388 392
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
-
4
-
-
79952536226
-
Efficient human iPS cell derivation by a non-integrating plasmid from blood cells with unique epigenetic and gene expression signatures
-
B.K. Chou, P. Mali, X. Huang, Z. Ye, S.N. Dowey, L.M. Resar, C. Zou, Y.A. Zhang, J. Tong, and L. Cheng Efficient human iPS cell derivation by a non-integrating plasmid from blood cells with unique epigenetic and gene expression signatures Cell Res. 21 2011 518 529
-
(2011)
Cell Res.
, vol.21
, pp. 518-529
-
-
Chou, B.K.1
Mali, P.2
Huang, X.3
Ye, Z.4
Dowey, S.N.5
Resar, L.M.6
Zou, C.7
Zhang, Y.A.8
Tong, J.9
Cheng, L.10
-
5
-
-
70649095120
-
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
-
A. Doi, I.H. Park, B. Wen, P. Murakami, M.J. Aryee, R. Irizarry, B. Herb, C. Ladd-Acosta, J. Rho, and S. Loewer et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts Nat. Genet. 41 2009 1350 1353
-
(2009)
Nat. Genet.
, vol.41
, pp. 1350-1353
-
-
Doi, A.1
Park, I.H.2
Wen, B.3
Murakami, P.4
Aryee, M.J.5
Irizarry, R.6
Herb, B.7
Ladd-Acosta, C.8
Rho, J.9
Loewer, S.10
-
6
-
-
71749084889
-
The role of DNA methylation in the central nervous system and neuropsychiatric disorders
-
J. Feng, and G. Fan The role of DNA methylation in the central nervous system and neuropsychiatric disorders Int. Rev. Neurobiol. 89 2009 67 84
-
(2009)
Int. Rev. Neurobiol.
, vol.89
, pp. 67-84
-
-
Feng, J.1
Fan, G.2
-
7
-
-
77956260872
-
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
-
M.G. Guenther, G.M. Frampton, F. Soldner, D. Hockemeyer, M. Mitalipova, R. Jaenisch, and R.A. Young Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells Cell Stem Cell 7 2010 249 257
-
(2010)
Cell Stem Cell
, vol.7
, pp. 249-257
-
-
Guenther, M.G.1
Frampton, G.M.2
Soldner, F.3
Hockemeyer, D.4
Mitalipova, M.5
Jaenisch, R.6
Young, R.A.7
-
8
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
R.D. Hawkins, G.C. Hon, L.K. Lee, Q. Ngo, R. Lister, M. Pelizzola, L.E. Edsall, S. Kuan, Y. Luu, and S. Klugman et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells Cell Stem Cell 6 2010 479 491
-
(2010)
Cell Stem Cell
, vol.6
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
Ngo, Q.4
Lister, R.5
Pelizzola, M.6
Edsall, L.E.7
Kuan, S.8
Luu, Y.9
Klugman, S.10
-
9
-
-
77955449906
-
Epigenetic memory in induced pluripotent stem cells
-
K. Kim, A. Doi, B. Wen, K. Ng, R. Zhao, P. Cahan, J. Kim, M.J. Aryee, H. Ji, and L.I. Ehrlich et al. Epigenetic memory in induced pluripotent stem cells Nature 467 2010 285 290
-
(2010)
Nature
, vol.467
, pp. 285-290
-
-
Kim, K.1
Doi, A.2
Wen, B.3
Ng, K.4
Zhao, R.5
Cahan, P.6
Kim, J.7
Aryee, M.J.8
Ji, H.9
Ehrlich, L.I.10
-
10
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
L. Laurent, E. Wong, G. Li, T. Huynh, A. Tsirigos, C.T. Ong, H.M. Low, K.W. Kin Sung, I. Rigoutsos, J. Loring, and C.L. Wei Dynamic changes in the human methylome during differentiation Genome Res. 20 2010 320 331
-
(2010)
Genome Res.
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
Ong, C.T.6
Low, H.M.7
Kin Sung, K.W.8
Rigoutsos, I.9
Loring, J.10
Wei, C.L.11
-
11
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
R. Lister, M. Pelizzola, R.H. Dowen, R.D. Hawkins, G. Hon, J. Tonti-Filippini, J.R. Nery, L. Lee, Z. Ye, and Q.M. Ngo et al. Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 2009 315 322
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
-
12
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
R. Lister, M. Pelizzola, Y.S. Kida, R.D. Hawkins, J.R. Nery, G. Hon, J. Antosiewicz-Bourget, R. O'Malley, R. Castanon, and S. Klugman et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells Nature 471 2011 68 73
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
Hawkins, R.D.4
Nery, J.R.5
Hon, G.6
Antosiewicz-Bourget, J.7
O'Malley, R.8
Castanon, R.9
Klugman, S.10
-
13
-
-
46449094276
-
Dissecting direct reprogramming through integrative genomic analysis
-
T.S. Mikkelsen, J. Hanna, X. Zhang, M. Ku, M. Wernig, P. Schorderet, B.E. Bernstein, R. Jaenisch, E.S. Lander, and A. Meissner Dissecting direct reprogramming through integrative genomic analysis Nature 454 2008 49 55
-
(2008)
Nature
, vol.454
, pp. 49-55
-
-
Mikkelsen, T.S.1
Hanna, J.2
Zhang, X.3
Ku, M.4
Wernig, M.5
Schorderet, P.6
Bernstein, B.E.7
Jaenisch, R.8
Lander, E.S.9
Meissner, A.10
-
14
-
-
84860643156
-
Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives
-
K.L. Nazor, G. Altun, C. Lynch, H. Tran, J.V. Harness, I. Slavin, I. Garitaonandia, F.J. Müller, Y.C. Wang, and F.S. Boscolo et al. Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives Cell Stem Cell 10 2012 620 634
-
(2012)
Cell Stem Cell
, vol.10
, pp. 620-634
-
-
Nazor, K.L.1
Altun, G.2
Lynch, C.3
Tran, H.4
Harness, J.V.5
Slavin, I.6
Garitaonandia, I.7
Müller, F.J.8
Wang, Y.C.9
Boscolo, F.S.10
-
15
-
-
77956247114
-
Lab-specific gene expression signatures in pluripotent stem cells
-
A.M. Newman, and J.B. Cooper Lab-specific gene expression signatures in pluripotent stem cells Cell Stem Cell 7 2010 258 262
-
(2010)
Cell Stem Cell
, vol.7
, pp. 258-262
-
-
Newman, A.M.1
Cooper, J.B.2
-
16
-
-
79957998057
-
DNA methylation dynamics in human induced pluripotent stem cells over time
-
K. Nishino, M. Toyoda, M. Yamazaki-Inoue, Y. Fukawatase, E. Chikazawa, H. Sakaguchi, H. Akutsu, and A. Umezawa DNA methylation dynamics in human induced pluripotent stem cells over time PLoS Genet. 7 2011 e1002085
-
(2011)
PLoS Genet.
, vol.7
, pp. 1002085
-
-
Nishino, K.1
Toyoda, M.2
Yamazaki-Inoue, M.3
Fukawatase, Y.4
Chikazawa, E.5
Sakaguchi, H.6
Akutsu, H.7
Umezawa, A.8
-
17
-
-
85027958626
-
Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells
-
Y. Ohi, H. Qin, C. Hong, L. Blouin, J.M. Polo, T. Guo, Z. Qi, S.L. Downey, P.D. Manos, and D.J. Rossi et al. Incomplete DNA methylation underlies a transcriptional memory of somatic cells in human iPS cells Nat. Cell Biol. 13 2011 541 549
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 541-549
-
-
Ohi, Y.1
Qin, H.2
Hong, C.3
Blouin, L.4
Polo, J.M.5
Guo, T.6
Qi, Z.7
Downey, S.L.8
Manos, P.D.9
Rossi, D.J.10
-
18
-
-
84867035018
-
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells
-
S. Ruiz, D. Diep, A. Gore, A.D. Panopoulos, N. Montserrat, N. Plongthongkum, S. Kumar, H.L. Fung, A. Giorgetti, and J. Bilic et al. Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells Proc. Natl. Acad. Sci. USA 109 2012 16196 16201
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 16196-16201
-
-
Ruiz, S.1
Diep, D.2
Gore, A.3
Panopoulos, A.D.4
Montserrat, N.5
Plongthongkum, N.6
Kumar, S.7
Fung, H.L.8
Giorgetti, A.9
Bilic, J.10
-
19
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
M.B. Stadler, R. Murr, L. Burger, R. Ivanek, F. Lienert, A. Schöler, E. van Nimwegen, C. Wirbelauer, E.J. Oakeley, and D. Gaidatzis et al. DNA-binding factors shape the mouse methylome at distal regulatory regions Nature 480 2011 490 495
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Schöler, A.6
Van Nimwegen, E.7
Wirbelauer, C.8
Oakeley, E.J.9
Gaidatzis, D.10
-
20
-
-
39149115929
-
Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse
-
M. Stadtfeld, N. Maherali, D.T. Breault, and K. Hochedlinger Defining molecular cornerstones during fibroblast to iPS cell reprogramming in mouse Cell Stem Cell 2 2008 230 240
-
(2008)
Cell Stem Cell
, vol.2
, pp. 230-240
-
-
Stadtfeld, M.1
Maherali, N.2
Breault, D.T.3
Hochedlinger, K.4
-
21
-
-
84857080023
-
Functional modules distinguish human induced pluripotent stem cells from embryonic stem cells
-
A. Wang, K. Huang, Y. Shen, Z. Xue, C. Cai, S. Horvath, and G. Fan Functional modules distinguish human induced pluripotent stem cells from embryonic stem cells Stem Cells Dev. 20 2011 1937 1950
-
(2011)
Stem Cells Dev.
, vol.20
, pp. 1937-1950
-
-
Wang, A.1
Huang, K.2
Shen, Y.3
Xue, Z.4
Cai, C.5
Horvath, S.6
Fan, G.7
-
22
-
-
84855281409
-
Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
-
M.J. Ziller, F. Müller, J. Liao, Y. Zhang, H. Gu, C. Bock, P. Boyle, C.B. Epstein, B.E. Bernstein, and T. Lengauer et al. Genomic distribution and inter-sample variation of non-CpG methylation across human cell types PLoS Genet. 7 2011 e1002389
-
(2011)
PLoS Genet.
, vol.7
, pp. 1002389
-
-
Ziller, M.J.1
Müller, F.2
Liao, J.3
Zhang, Y.4
Gu, H.5
Bock, C.6
Boyle, P.7
Epstein, C.B.8
Bernstein, B.E.9
Lengauer, T.10
|