Diversification of chemosymbiotic bivalves: Origins and relationships of deeper water Lucinidae

Biological Journal of the Linnean Society

Volumn 111, Issue 2, 2014, Pages 401-420

  Taylor, John D ^a   Glover, Emily A ^a   Williams, Suzanne T ^a  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

Adaptive radiation; Chemosymbiosis; Hydrocarbon seeps; Phylogeny

Indexed keywords

ABUNDANCE; ADAPTIVE RADIATION; BIVALVE; CLADISTICS; CLUSTER ANALYSIS; DEEP WATER; HOST-SYMBIONT INTERACTION; HYDROCARBON; HYDROCARBON SEEP; JURASSIC; MOLECULAR ANALYSIS; OLIGOCENE; PHYLOGENY; RADIATION BALANCE; SHALLOW WATER; SUCCESSION;

BATHYAUSTRIELLA THIONIPTA; BIVALVIA; CARDIOLUCINA; CODAKIA; CTENA; LUCINIDAE; LUCINOMA; MYRTEA; NOTOMYRTEA;

EID: 84892503066     PISSN: 00244066     EISSN: 10958312     Source Type: Journal    
DOI: 10.1111/bij.12208     Document Type: Article

References (88)

1. Amano K, Jenkins RG, Kurihara Y, Kiel S. 2008. A new genus for Vesicomya inflata Kanie and Nishida, a lucinid shell convergent with that of vesicomyids, from Cretaceous strata of Hokkaido, Japan. Veliger 50: 255-262.
2. Arndt-Sullivan C, Lechaire J, Felbeck H. 2008. Extreme tolerance to anoxia in the Lucinoma aequizonata symbiosis. Journal of Shellfish Research 27: 119-127.
3. Ball AD, Purdy KJ, Glover EA, Taylor JD. 2009. Ctenidial structure and three bacterial symbiont morphotypes in Anodontia (Euanodontia) ovum (Reeve, 1850) from the Great Barrier Reef, Australia (Bivalvia: Lucinidae). Journal of Molluscan Studies 75: 175-185.
4. Bernardino AF, Levin LA, Thurber AR, Smith CR. 2012. Comparative composition, diversity and trophic ecology of sediment macrofauna at vents, seeps and organic falls. PLoS ONE 7: 1-17.
5. Bouchet P, von Cosel R. 2004. The world's largest lucinid is an undescribed species from Taiwan (Mollusca: Bivalvia). Zoological Studies 43: 704-711.
6. Bouchet P, Héros V, Lozouet P, Maestrati P. 2008. A quarter century of deep-sea malacological exploration in the South and West Pacific: where do we stand? How far to go? In: Héros V, Cowie RH, Bouchet P, eds. Tropical Deep Sea Benthos 25. Mémoires du Muséum national d'Histoire naturelle 196: 9-40.
7. Bretsky SS. 1976. Evolution and classification of the Lucinidae (Mollusca; Bivalvia). Palaeontographica Americana 8: 219-337.
8. Brissac T, Merçot H, Gros O. 2011. Lucinidae/sulfur-oxidising bacteria: ancestral heritage or opportunistic association? Further insights from the Bohol Sea (The Philippines). FEMS Microbiology and Ecology 75: 63-76.
9. Brissac T, Rodrigues CF, Gros O, Duperron S. 2011. Characterization of bacterial symbioses in Myrtea sp. (Bivalvia: Lucinidae) and Thyasira sp. (Bivalvia: Thyasiridae) from a cold seep in the Eastern Mediterranean. Marine Ecology 32: 198-210.
10. Callender WR, Powell EN. 1997. Autochthonous death assemblages from chemautotrophic communities at petroleum seeps: palaeoproduction, energy flow and implications from the fossil record. Historical Biology 12: 165-119.
11. Callender WR, Powell EN. 2000. Long-term history of chemautotrophic clam-dominated faunas of petroleum seeps in the northwestern Gulf of Mexico. Facies 4: 177-204.
12. Cary SC, Fry B, Felbeck H, Vetter RD. 1989. Habitat characterization and nutritional strategies of the endosymbiont-bearing bivalve Lucinoma aequizonata. Marine Ecology - Progress Series 55: 31-45.
13. Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
14. Chavan A. 1969. Superfamily Lucinacea Fleming, 1828. In: Moore RC, ed. Treatise on invertebrate paleontology, Part N, Mollusca 6, Bivalvia, Vol. 2. Boulder, CO: Geological Society of America and University of Kansas Press, N491-N518.
15. Clari P, Cavagna S, Martire L, Hunziker J. 2004. A Miocene mud volcano and its plumbing system: a chaotic complex revisited (Monferrato, NW Italy). Journal of Sedimentary Research 74: 662-676.
16. Coan EV, Valentich-Scott P. 2012. Bivalve seashells of tropical west America. Marine bivalve mollusks from Baja California to northern Peru. Santa Barbara, CA: Santa Barbara Museum of Natural History.
17. Coan EV, Valentich-Scott P, Bernard FR. 2000. Bivalve seashells of Western North America. Marine Bivalve Mollusks from Arctic Alaska to Baja California. Santa Barbara, CA: Santa Barbara Museum of Natural History.
18. Conti S, Fontana D. 1999. Miocene chemoherms of the northern Appenines, Italy. Geology 27: 927-930.
19. Cosel R. 2006. Taxonomy of West African bivalves VIII. Remarks on Lucinidae, with descriptions of five new genera and nine new species. Zoosystema 28: 805-851.
20. von Cosel R, Bouchet P. 2008. Tropical deep-water lucinids (Mollusca: Bivalvia) from the Indo-Pacific: essentially unknown, but diverse and occasionally gigantic. In: Héros V, Cowie R, Bouchet P, eds. Tropical Deep Sea Benthos, volume 25. Mémoires du Muséum, national d'Histoire naturelle 196: 115-213.
21. Dall WH. 1901. Synopsis of the Lucinacea and of the American species. Proceedings of the United States National Museum 23: 779-833.
22. Dando PR, Southward AJ, Southward EC, Terwilliger NB, Terwilliger RC. 1985. Sulphur-oxidising bacteria and haemoglobin in gills of the bivalve mollusc Myrtea spinifera. Marine Ecology - Progress Series 23: 85-98.
23. Dell RK. 1964. Antarctic and subantarctic Mollusca: amphineura, scaphopoda and bivalvia. Discovery Reports 33: 93-250.
24. Duperron S, Fiala-Medioni A, Caprais JC, Olu K, Sibuet M. 2007. Evidence for chemoautotrophic symbiosis in a Mediterranean cold seep clam (Bivalvia: Lucinidae): comparative sequence analysis of bacterial 16S rRNA, APS reductase and Rubis CO genes. FEMS Microbiology and Ecology 59: 64-70.
25. Frenkiel L, Gros O, Mouëza M. 1996. Gill structure in Lucina pectinata (Bivalvia: Lucinidae) with reference to hemoglobin in bivalves with symbiotic sulphur-oxidising bacteria. Marine Biology 125: 511-524.
26. Gelman A, Rubin DB. 1992. Inference from iterative simulation using multiple sequences (with discussion). Statistical Science 7: 457-511.
27. Gill FL, Little CTS. 2013. A new genus of lucinid bivalve from hydrocarbon seeps. Acta Palaeontologia Polonica 58: 573-578.
28. Glover EA, Taylor JD. 2007. Diversity of chemosymbiotic bivalves on coral reefs: lucinidae of New Caledonia and Lifou (Mollusca, Bivalvia). Zoosystema 29: 109-181.
29. Glover EA, Taylor JD. In press. Lucinidae of the Philippines: highest known diversity and ubiquity of chemosymbiotic bivalves from intertidal to bathyal depths (Mollusca: Bivalvia: Lucinidae). Mémoires Muséum National d'Histoire Naturelle.
30. Glover EA, Taylor JD, Rowden AA. 2004. Bathyaustriella thionipta, a new lucinid bivalve from a hydrothermal vent on the Kermadec Ridge, New Zealand and its relationship to shallow-water taxa (Bivalvia: Lucinidae). Journal of Molluscan Studies 70: 283-295.
31. van der Heide T, Govers LL, de Fouw J, Olff H, van der Geest M, van Katwijk MM, Piersma T, van de Koppel J, Silliman BR, Smolders AJP, van Gils JA. 2012. A three-stage symbiosis forms the foundation of seagrass ecosystems. Science 336: 1432-1434.
32. Hentschel U, Hand SC, Felbeck H. 1996. The contribution of nitrate respiration to the energy budget of the symbiont-containing clam Lucinoma aequizonata: a calorimetric study. Journal of Experimental Zoology 199: 427-433.
33. Holmes AM, Oliver PG, Sellanes J. 2005. A new species of Lucinoma (Bivalvia: Lucinoidea) from a methane gas seep off the southwest coast of Chile. Journal of Conchology 38: 673-682.
34. Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
35. Jablonski D. 2005. Evolutionary innovations in the fossil record: the intersection of ecology, development and macroevolution. Journal of Experimental Zoology 304B: 504-519.
36. Jacobs DK, Lindberg DR. 1998. Oxygen and evolutionary patterns in the sea: onshore/offshore trends and recent recruitment of deep-sea faunas. Proceedings of the National Academy of Sciences of the United States of America 95: 9396-9401.
37. Kase T, Kurihara Y, Hagino K. 2007. Middle Miocene chemosynthetic thraciid Nipponothracia gigantea (Shikama, 1968) from central Japan is a large lucinid bivalve (Lucinoidea: Mollusca). Veliger 49: 294-302.
38. Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059-3066.
39. Katoh K, Toh H. 2008. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
40. Kelly SRA, Blanc E, Price SP, Whitham AG. 2000. Early Cretaceous giant bivalves from seep-related limestone mounds, Wollaston Forland, Northeast Greenland. In: Harper EM, Taylor JD, Crame JA, eds. The Evolutionary Biology of the Bivalvia. Geological Society of London Special Publication 177: 227-246.
41. Kendrick GW, Vartak AV. 2007. Middle Cretaceous (Cenomanian) bivalves from the Karai Formaton, Uttattur Group, of the Cauvery Basin, south India. Records of the Western Australian Museum, Supplement 72: 1-101.
42. Kiel S. 2010. The fossil record of vent and seep mollusks. In: Kiel S, ed. The vent and seep biota - from microbes to ecosystems. Topics in geobiology. 33: Heidelburg: Springer, 255-277.
43. Kiel S. 2013. Lucinid bivalves from ancient methane seeps. Journal of Molluscan Studies 79: 346-363.
44. Kiel S, Amano K. 2013. The earliest bathymodiolin mussels: an evaluation of Eocene and Oligocene taxa from deep-sea methane seep deposits in western Washington State, USA. Journal of Paleontology 87: 589-602.
45. Kiel S, Campbell KA, Gaillard C. 2010. New and little known mollusks from ancient chemosynthetic environments. Zootaxa 2390: 26-48.
46. Krauss DW, Wittenberg JB. 1990. Hemoglobins of Lucina pectinata/bacteria symbiosis 1. Molecular properties, kinetics and equilibria of reactions with ligands. Journal of Biological Chemistry 265: 16043-16053.
47. Krylova EM, Sahling H. 2010. Vesicomyidae (Bivalvia): current taxonomy and distribution. PLoS ONE 5: 1-9.
48. Kuhara T, Kano Y, Yoshikoshi K, Hashimoto J. In press. Shell morphology, anatomy and gill histology of the deep-sea bivalve Elliptiolucina ingens and molecular phylogenetic reconstruction of the chemosynthetic family Lucinidae. Venus.
49. Lebata MJHL, Primavera JH. 2001. Gill structure, anatomy and habitat of Anodontia edentula; evidence of endosymbiosis. Journal of Shellfish Research 20: 1273-1278.
50. Lindner A, Cairns SD, Cunningham CW. 2008. From offshore to onshore: multiple origins of shallow-water corals from deep-sea ancestors. PLoS ONE 3: e2429.
51. Majima R, Ikeda K, Wada H, Kato K. 2003. An outer-shelf cold-seep assemblage in forearc basin fill, Pliocene Takanabe Formation, Kyushu Island, Japan. Paleontological Research 7: 297-311.
52. Majima R, Nobuhara T, Kitazaki T. 2005. Review of fossil chemosynthetic assemblages in Japan. Palaeogeography, Palaeoclimatology, Palaeoecology 227: 86-123.
53. Matsuda T. 1985. The bivalve fauna from the Miyanohara Formation (Lower Cenomanian) of Sakawa area, Shikoku. Transactions and Proceedings of the Paleontological Society of Japan 137: 1-18.
54. Meyer E, Nilkerd B, Glover EA, Taylor JD. 2008. Ecological importance of chemoautotrophic lucinid bivalves in a peri-mangrove community in Eastern Thailand. Raffles Museum Bulletin of Zoology supplement 18: 41-55.
55. Mikkelsen PM, Bieler R. 2007. Seashells of Southern Florida. Living marine molluscs of the Florida Keys and adjacent regions. Bivalves. Princeton, NJ: Princeton University Press.
56. Moroni MA. 1966. Malacofauna del 'Calcare a Lucine' di S. Sofia-Forli. Palaeontologia Italica 60: 69-87.
57. Nesbit EA, Martin RA, Campbell KA. 2013. New records of Oligocene diffuse hydrocarbon seeps, northern Cascadia margin. Palaeogeography, Paleoclimatology, Palaeoecology 390: 116-129.
58. Okutani T. 2011. Bizarre lucinid bivalves from southwestern Japan, including a new species, and relatives in adjacent waters. Venus 69: 115-122.
59. Okutani T, Hashimoto J. 1997. A new species of lucinid bivalve (Heterodonta: Lucinidae) from Kanesu-no-Se bank near the mouth of Suruga Bay, with a review of the recent species of the chemosynthetic genus Lucinoma from Japan. Venus 56: 271-280.
60. Oliver PG. 2013. Description of Atopomya dolobrata gen. et sp. nov.; first record of bacterial symbiosis in the Saxicavellinae (Bivalvia). Journal of Conchology 41: 359-367.
61. Oliver PG, Holmes AM. 2006. A new species of Lucinoma (Bivalvia: Lucinoidea) from the oxygen minimum zone of the Oman margin, Arabian Sea. Journal of Conchology 39: 63-77.
62. Oliver PG, Rodrigues CF, Cunha MR. 2012. Chemosymbiotic bivalves from the mud volcanoes of the Gulf of Cadiz, NE Atlantic, with descriptions of new species of Solemyidae, Lucinidae and Vesicomyidae. ZooKeys 113: 1-38.
63. Oliver PG, Southward EC, Dando PR. 2013. Bacterial symbiosis in Syssitomya pourtalesiana Oliver, 2012 (Galeommatoidea: Montacutidae), a bivalve commensal with the deep-sea echinoid Pourtalesia. Journal of Molluscan Studies 79: 30-41.
64. Olu-Le Roy K, Sibu M, Fiala-Médioni A, Gofas S, Salas C, Mariotti A, Foucher J-P, Woodside J. 2004. Cold seep communities in the deep eastern Mediterranean Sea: composition, symbiosis and spatial distribution on mud volcanoes. Deep-Sea Research I 51: 1915-1936.
65. Oschmann W. 1988. Upper Kimmeridgian and Portlandian marine macrobenthic associations from southern England and northern France. Facies 18: 49-82.
66. Rodrigues CF, Hilário A, Cunha MR. 2013. Chemosynthetic species from the Gulf of Cadiz (NE Atlantic): distribution, life styles and nutritional patterns. Biogeosciences 10: 2569-2581.
67. Rossi F, Colao E, Martinez MJ, Klein JC, Carcaillet F, Callier MD, Rutger de Wit R, Caro A. 2013. Spatial distribution and nutritional requirements of the endosymbiont-bearing bivalve Loripes lacteus (sensu Poli, 1791) in a Mediterranean Nanozostera noltii (Hornemann) meadow. Journal of Experimental Marine Biology and Ecology 440: 108-115.
68. Salas C, Woodside J. 2002. Lucinoma kazani n. sp. (Mollusca: Bivalvia): evidence of a living benthic community associated with a cold seep in the eastern Mediterranean Sea. Deep-Sea Research I 49: 991-1005.
69. Samadi S, Corbari L, Lorion J, Hourdez S, Haga T, Dupont J, Boisselier MC, Richer de Forges B. 2010. Biodiversity of deep-sea organisms associated with sunken-wood or other organic remains sampled in the tropical Indo-Pacific. Cahiers de Biologie Marine 51: 459-466.
70. Schweimanns M, Felbeck H. 1985. Significance of the occurrence of chemoautotrophic bacterial endosymbionts in lucinid clams from Bermuda. Marine Ecology - Progress Series 24: 113-120.
71. Speden IG. 1970. The type Fox Hills Formation, Cretaceous (Maestrichtian), South Dakota. Part 2. Systematics of the Bivalvia. Bulletin Peabody Museum of Natural History 33: 1-222.
72. Swofford DL. 2000. PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sunderland, MA: Sinauer Associates.
73. Tashiro M, Kozai T. 1988. Bivalve fossils from the Type Monobegawa Group. Research Reports of the Kochi University 37: 1-64.
74. Taylor JD, Glover EA. 1997. The lucinid bivalve genus Cardiolucina (Mollusca, Bivalvia, Lucinidae): systematics, anatomy and relationships. Bulletin of the Natural History Museum London (Zoology) 63: 93-122.
75. Taylor JD, Glover EA. 2005. Cryptic diversity of chemosymbiotic bivalves: a systematic revision of worldwide Anodontia (Mollusca: Bivalvia: Lucinidae). Systematics and Biodiversity 3: 281-338.
76. Taylor JD, Glover EA. 2008. Callucina and Pseudolucinisca (Mollusca: Bivalvia: Lucinidae) from Australia: revision of genera and description of three new species. Records of the Western Australian Museum 24: 443-457.
77. Taylor JD, Glover EA. 2009. New lucinid bivalves from hydrocarbon seeps of the Western Atlantic (Mollusca: Bivalvia: Lucinidae). Steenstrupia 30: 127-140.
78. Taylor JD, Glover EA. 2010. Chemosymbiotic bivalves. In: Kiel S, ed. The vent and seep biota - from microbes to ecosystems. Topics in geobiology. 33. Heidelburg: Springer, 107-135.
79. Taylor JD, Glover EA. 2013. New lucinid bivalves from shallow and deeper water of the Indian and West Pacific Oceans (Mollusca: Bivalvia: Lucinidae). ZooKeys 326: 69-90.
80. Taylor JD, Glover EA, Smith L, Dyal P, Williams ST. 2011. Molecular phylogeny and classification of the chemosymbiotic bivalve family Lucinidae (Mollusca: Bivalvia). Zoological Journal of the Linnean Society 163: 15-49.
81. Taylor JD, Williams ST, Glover EA, Dyal P. 2007. A molecular phylogeny of heterodont bivalves (Mollusca: Bivalvia: Heterodonta): new analyses of 18S rRNA and 28S rRNA genes. Zoologica Scripta 36: 587-606.
82. Thuy B, Gale AS, Croh A, Kucera M, Numberger-Thuy LV, Reich M, Stöhr S. 2012. Ancient origin of the modern deep-sea fauna. PLoS ONE 7: e46913.
83. Vrijenhoek RC. 2013. On the instability and evolutionary age of deep-sea chemosynthetic communities. Deep-Sea Research II 92: 189-200.
84. Watanabe H, Fujikura K, Kojima S, Miyazaki J-I, Fujiwara Y. 2010. Japan: vents and seeps in close proximity. In: Kiel S, ed. The vent and seep biota - from microbes to ecosystems. Topics in geobiology. 33. Heidelburg: Springer, 379-401.
85. Wignall PB. 1990. Benthic palaeoecology of the late Jurassic Kimmeridge Clay of England. Special Papers in Palaeontology 43: 5-74.
86. Williams ST, Ozawa T. 2006. Molecular phylogeny suggests polyphyly of both the turban shells (family Turbinidae) and the superfamily Trochoidea (Mollusca: Vetigastropoda). Molecular Phylogenetics and Evolution 39: 33-51.
87. Williams ST, Taylor JD, Glover EA. 2004. Molecular phylogeny of the Lucinoidea (Bivalvia): non-monophyly and separate acquisition of bacterial chemosymbiosis. Journal of Molluscan Studies 70: 187-202.
88. Zamorano P, Hendrickx ME. 2012. Distribution of Lucinoma heroica (Mollusca: Bivalvia: Lucinidae) in the minimum oxygen zone in the Gulf of California, Mexico. Marine Biodiversity Records 5: 1-8.