From offshore to onshore: Multiple origins of shallow-water corals from deep-dea ancestors

PLoS ONE

Volumn 3, Issue 6, 2008, Pages

  Lindner, Alberto ^a   Cairns, Stephen D ^b   Cunningham, Clifford W ^c  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b DEPARTMENT OF PALEOBIOLOGY   (United States)

^c DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PRIMER DNA;

ARTICLE; BENTHIC FAUNA; BIODIVERSITY; COELENTERATE; CONTROLLED STUDY; CORAL; CORAL REEF; MARINE ENVIRONMENT; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDATION; SHALLOW WATER CORAL; SPECIES INVASION; WATER TEMPERATURE; ANIMAL; ANTHOZOA; BIOLOGY; CLASSIFICATION; EVOLUTION; PHYLOGENY; POLYMERASE CHAIN REACTION;

ANIMALIA; ANTHOZOA; CNIDARIA; HYDROZOA; STYLASTERIDAE;

ANIMALS; ANTHOZOA; BASE SEQUENCE; DNA PRIMERS; EVOLUTION; MARINE BIOLOGY; PHYLOGENY; POLYMERASE CHAIN REACTION;

EID: 49149126964     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002429     Document Type: Article

References (46)

1. Sanders HL (1968) Marine benthic diversity: a comparative study. Am Nat 102: 243-282.
2. Grassle JF, Maciolek NJ (1992) Deep-sea species richness: regional and local diversity estimates from quantitative bottom samples. Am Nat 139: 313-341.
3. Moseley HN (1880) Deep-sea dredging and life in the deep sea. Nature 21: 543-547.
4. Jablonski D, Sepkoski JJ, Bottjer DJ, Sheehan PM (1983) Onshore-offshore patterns in the evolution of phanerozoic shelf communities. Science 222: 1123-1125.
5. Wolf T (1960) The hadal community, an introduction. Deep-Sea Res 6: 95-124.
6. Hessler RR, Sanders HL (1967) Faunal diversity in the deep-sea. Deep-Sea Res 14: 65-78.
7. Little CTS, Vrijenhoek RC (2003) Are hydrothermal vent animals living fossils? Trends Ecol Evol 18: 582-588.
8. Clarke AHJ (1962) On the composition, zoogeography, origin and age of the deep-sea mollusk fauna. Deep-Sea Res 9: 291-306.
9. Allen JA (1983) The ecology of the deep-sea molluscs. In: Russel-Hunter WD, ed. The Mollusca. London: Academic Press. pp 29-75.
10. Hessler RR, Wilson GDF (1983) The origin and biogeography of malacostracan crustaceans in the deep sea. In: Sims RW, Price JH, Whalley PES, eds. Evolution, time and space: the emergence ofthe biosphere. London: Academic Press. pp 227-254.
11. Madsen FJ (1961) On the zoogeography and origin of the abyssal fauna. Galathca Rep 4: 177-218.
12. Jacobs DK, Lindberg DR (1998) Oxygen and evolutionary patterns in the sea: onshore/offshore trends and recent recruitment of deep-sea faunas. Proc Natl Acad Sci U S A 95: 9396-9401.
13. Vermeij GJ (1987) Evolution and Escalation. Princeton (New Jersey): Princeton University Press.
14. Jablonski D, Bottjer DJ (1991) Environmental patterns in the origins of higher taxa: the post-Paleozoic fossil record. Science 252: 1831-1833.
15. Jablonski D (2005) Evolutionary innovations in the fossil record: the intersection of ecclogy, development and macroevolution. J Exp Zool Part B 304: 504-519.
16. Cairns SD (2007) Deep-water corals: an overview with special reference to diversity and distribution of deep-water scleractinian corals. Bull Mar Sci 81: 311-322.
17. Bernecker M, Weidlich O (1990) The Danian (Paleocene) coral limestone of Fakse, Denmark: a model for ancient aphotic, azooxanthellate coral mounds. Facics 22: 103-138.
18. Cairns SD (1992) Worldwide distribution of the Stylasteridae (Cnidaria: Hydrozoa). Sci Mar 56: 125-130.
19. Cairns SD (1982) A new subfamily of operculate stylasterine (Coelenterata: Hydrozoa) from the Subantarctic. J Nat His 16: 71-81.
20. Briggs JC (2004) Older species: a rejuvenation on coral reefs? J Biogeogr 31: 525-530.
21. Cairns SD (1983) A generic revision of the Stylasterina (Coelenterata: Hydrozoa). Bull Mar Sci 33: 427-508.
22. Stanley GD, Cairns SD (1988) Constructional azooxanthellate coral communities: an overview with implications for the fossil record. Palaios 3: 233-242.
23. Roberts JM, Wheeler AJ, Freiwald A (2006) Reefs of the deep: the biology and geology of cold-water coral ecosystems. Science 312: 543-547.
24. Stone RP (2006) Coral habitat in the Aleutian Islands of Alaska: depth distribution, fine-scale species associations, and fisheries interactions. Coral Reefs 25: 229-238.
25. Lörz AN, Coleman CO (2003) Dikawa andresi, a new amphipod crustacean (Dikwidae) from the Scotia Arc. J Mar Biol Ass UK 83: 785-788.
26. Fukami H, Budd AF, Paulay G, Solé-Cava A, Chen CA, et al. (2004) Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals. Nature 427: 832-835.
27. Bellwood DR, Wainwright PC (2002) The history and biogeography of fishes on coral reefs. In: Sale PF, ed. Coral Reef Fishes. Amsterdam: Academic Press. pp 5-32.
28. Bonjer DJ, Jablonski D (1988) Paleoenvironmental patterns in the evolution of post-Paleozoic benthic, marine invertebrates. Palaios 3: 540-560.
29. Cacchione DA, Drake DE, Grant WD, Tate GB (1984) Rippled scour depressions on the inner continental shelf off central California. J Sediment Petrel 54: 1280-1291.
30. Davis RA (1977) Principles of Oceanography. Reading: Addison-Wesley Pub. Co.
31. Miller KJ, Mundy CN, Chadderton WL (2004) Ecological and genetic evidence or the vulnerability of shallow-water populations or the stylasterid hydrocoral Errina novaezelandiae in New Zealand's fiords. Aquatic Conserv Mar Freshw Ecosyst 14: 75-94.
32. Cunningham CW, Buss LW (1993) Molecular evidence for multiple episodes of paedomorphosis in the family Hydractiniidae. Bioch Syst Ecol 21: 57-69.
33. Medlin L, Elwood HJ, Stickel S, Sogin ML (199B) The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions. Gene 71: 491-499.
34. Yuasa HJ, Suzuki T, Yazawa M (2001) Structural organization of lower marine nonvertebrate calmodulin genes. Gene 279: 205-212.
35. Collins AG (2000) Towards understanding the phylogenetic history of Hydrozoa: hypothesis testing with 18S gene sequence data. Sci Mar 64: 5-22.
36. Miglietta MP (2005) A global prospective on life cycle, colony form and skeleton evolution in the Hydractiniidae (Phylum Cnidaria, Class Hydrozoa) with a taxonomic revision of the family. Ph.D. thesis, Duke University.
37. Swofford DL (1999) PAUP* Phylogenetic analysis using parsimony and other methods, version 4.0. Sunderland: Simmer Associates.
38. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
39. Huelsenbeck JP, Ronquist F (2001) MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
40. Sanderson MJ (2003) r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301-302.
41. Govindarajan AF, Halanych KM, Cunningham CW (2005) Mitochondrial evolution and phylogeography in the hydrozoan Obelia geniculata (Cmdaria). Mar Biol 146: 213-222.
42. Lewis PO (2001) A likelihood approach to estimating phylogeny from discrete morphological character data. Syst Biol 50: 913-925.
43. Maddison WP, Maddison DR (2007) Mesquite: a modular system for evolutionary analysis, version 2.0. Available: http://www.mesquiteproject.org.
44. Schluter D, Price T, Mooers AØ, Ludwig D (1997) Likelihood of ancestor states in adaptive radiation. Evolution 51: 1699-1711.
45. Pagel M (1999) The maximum likelihood approach to reconstructing ancestral character states on phylogenics. Syst Biol 48: 612-622.
46. Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16: 1114-1116.