메뉴 건너뛰기




Volumn 10, Issue 1, 2014, Pages 77-90

The optimisation and application of a metabolite profiling procedure for the metabolic phenotyping of Bacillus species

Author keywords

Bacillus; GC MS; Metabolomics; Probiotics; Substantial equivalence

Indexed keywords

ARTICLE; BACILLUS; BACTERIUM CULTURE; EXTRACTION; GENOME; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS FRAGMENTOGRAPHY; METABOLITE; METABOLOME; NONHUMAN; PHENOTYPE;

EID: 84892487501     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-013-0553-6     Document Type: Article
Times cited : (13)

References (50)
  • 1
    • 60749122700 scopus 로고
    • Bacterial carotenoids XXIX. The carotenoids of two yellow halophilic cocci including a new glycosidic methyl apo-lycopenoate
    • Aasen, A. J., Francis, G. W., & Liaaen-Jensen, S. (1969). Bacterial carotenoids XXIX. The carotenoids of two yellow halophilic cocci including a new glycosidic methyl apo-lycopenoate. Acta Chemica Scandinavica, 23(8), 2605-2615.
    • (1969) Acta Chemica Scandinavica , vol.23 , Issue.8 , pp. 2605-2615
    • Aasen, A.J.1    Francis, G.W.2    Liaaen-Jensen, S.3
  • 3
    • 79952106791 scopus 로고    scopus 로고
    • From zero to hero-design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production
    • Becker, J., Zelder, O., Hafner, S., Schroder, H., & Wittmann, C. (2011). From zero to hero-design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production. Metabolic Engineering, 13(2), 159-168.
    • (2011) Metabolic Engineering , vol.13 , Issue.2 , pp. 159-168
    • Becker, J.1    Zelder, O.2    Hafner, S.3    Schroder, H.4    Wittmann, C.5
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjaminin, Y., & Hochberg, Y. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, 57, 289-300.
    • (1995) Journal of the Royal Statistical Society , vol.57 , pp. 289-300
    • Benjaminin, Y.1    Hochberg, Y.2
  • 6
    • 63449129006 scopus 로고    scopus 로고
    • Investigation of the central carbon metabolism of Sorangium cellulosum: Metabolic network reconstruction and quantification of pathway fluxes
    • Bolten, C. J., Heinzle, E., Muller, R., & Wittmann, C. (2009). Investigation of the central carbon metabolism of Sorangium cellulosum: Metabolic network reconstruction and quantification of pathway fluxes. Journal of Microbiology and Biotechnology, 19(1), 23-36.
    • (2009) Journal of Microbiology and Biotechnology , vol.19 , Issue.1 , pp. 23-36
    • Bolten, C.J.1    Heinzle, E.2    Muller, R.3    Wittmann, C.4
  • 11
    • 48449098635 scopus 로고    scopus 로고
    • Mining microbial genomes for new natural products and biosynthetic pathways
    • Challis, G. L. (2008). Mining microbial genomes for new natural products and biosynthetic pathways. Microbiology, 154(6), 1555-1569.
    • (2008) Microbiology , vol.154 , Issue.6 , pp. 1555-1569
    • Challis, G.L.1
  • 13
    • 79551719109 scopus 로고    scopus 로고
    • Bacillus probiotiocs
    • Cutting, S. M. (2011). Bacillus probiotiocs. Food Microbiology, 28(2), 214-220.
    • (2011) Food Microbiology , vol.28 , Issue.2 , pp. 214-220
    • Cutting, S.M.1
  • 15
    • 35448980422 scopus 로고    scopus 로고
    • Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum
    • Faijes, M., Mars, A. E., & Smid, E. J. (2007). Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum. Microbial Cell Factories, 6, 27-32.
    • (2007) Microbial Cell Factories , vol.6 , pp. 27-32
    • Faijes, M.1    Mars, A.E.2    Smid, E.J.3
  • 16
    • 0030932384 scopus 로고    scopus 로고
    • Functional foods
    • Farr, D. R. (1997). Functional foods. Cancer Letters, 114(1-2), 59-63.
    • (1997) Cancer Letters , vol.114 , Issue.1-2 , pp. 59-63
    • Farr, D.R.1
  • 20
    • 0030806641 scopus 로고    scopus 로고
    • A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol
    • Gonzalez, B., Francois, J., & Renaud, M. (1997). A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol. Yeast, 13(14), 1347-1355.
    • (1997) Yeast , vol.13 , Issue.14 , pp. 1347-1355
    • Gonzalez, B.1    Francois, J.2    Renaud, M.3
  • 25
    • 33750024279 scopus 로고    scopus 로고
    • Identifying decomposition products in extracts of cellular metabolites
    • Kimball, E., & Rabinowitz, J. D. (2006). Identifying decomposition products in extracts of cellular metabolites. Analytical Biochemistry, 358(2), 273-280.
    • (2006) Analytical Biochemistry , vol.358 , Issue.2 , pp. 273-280
    • Kimball, E.1    Rabinowitz, J.D.2
  • 26
    • 67649785231 scopus 로고    scopus 로고
    • How large is the metabolome? A critical analysis of data exchange practices in chemistry
    • Kind, T., Scholz, M., & Fiehn, O. (2009). How large is the metabolome? A critical analysis of data exchange practices in chemistry. PLoS ONE, 4(5), e5440.
    • (2009) PLoS ONE , vol.4 , Issue.5
    • Kind, T.1    Scholz, M.2    Fiehn, O.3
  • 29
    • 0038210214 scopus 로고    scopus 로고
    • Riboswithes control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal, M., Boese, B., Barrick, J. E., Winkler, W. C., & Breaker, R. R. (2003). Riboswithes control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell, 113, 577-586.
    • (2003) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 30
    • 79551482320 scopus 로고    scopus 로고
    • Rv0989c encodes a novel (E)-geranyl diphosphate synthase facilitating decaprenyl diphosphate biosynthesis in Mycobacterium tuberculosis
    • Mann, F. M., Thomas, J. A., & Peters, R. J. (2011). Rv0989c encodes a novel (E)-geranyl diphosphate synthase facilitating decaprenyl diphosphate biosynthesis in Mycobacterium tuberculosis. FEBS Letters, 585(3), 549-554.
    • (2011) FEBS Letters , vol.585 , Issue.3 , pp. 549-554
    • Mann, F.M.1    Thomas, J.A.2    Peters, R.J.3
  • 36
    • 84866915970 scopus 로고    scopus 로고
    • Evalauation of Bacillus subtilis strains as probiotics and their potential as a food ingredient
    • Permpoonpattana, P., Hong, H. A., Khaneja, R., & Cutting, S. M. (2012). Evalauation of Bacillus subtilis strains as probiotics and their potential as a food ingredient. Beneficial Microbes, 3(2), 127-135.
    • (2012) Beneficial Microbes , vol.3 , Issue.2 , pp. 127-135
    • Permpoonpattana, P.1    Hong, H.A.2    Khaneja, R.3    Cutting, S.M.4
  • 37
    • 34548023950 scopus 로고    scopus 로고
    • Acidic acetonitrile for cellular metabolome extraction from Escherichia coli
    • Rabinowitz, J. D., & Kimball, E. (2007). Acidic acetonitrile for cellular metabolome extraction from Escherichia coli. Analytical Chemistry, 79(16), 6167-6173.
    • (2007) Analytical Chemistry , vol.79 , Issue.16 , pp. 6167-6173
    • Rabinowitz, J.D.1    Kimball, E.2
  • 39
    • 77952885573 scopus 로고    scopus 로고
    • Unveiling cellular biochemical reactions via metabolomics-driven approaches
    • Saito, N., Ohashi, Y., Soga, T., & Tomita, M. (2010). Unveiling cellular biochemical reactions via metabolomics-driven approaches. Current Opinion in Microbiology, 13(3), 358-362.
    • (2010) Current Opinion in Microbiology , vol.13 , Issue.3 , pp. 358-362
    • Saito, N.1    Ohashi, Y.2    Soga, T.3    Tomita, M.4
  • 43
    • 60749119262 scopus 로고    scopus 로고
    • Methyl glucosyl-3,4-dehydro-apo-8′-lycopenoate, a novel antioxidative glyco-C30-carotenoic acid produced by a marine bacterium Planococcus maritimus
    • Shindo, K., Endo, M., Miyake, Y., Wakasugi, K., Morritt, D., Bramley, P. M., et al. (2008). Methyl glucosyl-3, 4-dehydro-apo-8′-lycopenoate, a novel antioxidative glyco-C30-carotenoic acid produced by a marine bacterium Planococcus maritimus. Journal of Antibiotics (Tokyo), 61(12), 729-735.
    • (2008) Journal of Antibiotics (Tokyo) , vol.61 , Issue.12 , pp. 729-735
    • Shindo, K.1    Endo, M.2    Miyake, Y.3    Wakasugi, K.4    Morritt, D.5    Bramley, P.M.6    Fraser, P.D.7    Kasai, H.8    Misawa, N.9
  • 44
  • 46
    • 47349107339 scopus 로고    scopus 로고
    • Maintenance metabolism and carbon fluxes in Bacillus species
    • Tannler, S., Decasper, S., & Sauer, U. (2008). Maintenance metabolism and carbon fluxes in Bacillus species. Microbial Cell Factories, 7, 19-31.
    • (2008) Microbial Cell Factories , vol.7 , pp. 19-31
    • Tannler, S.1    Decasper, S.2    Sauer, U.3
  • 48
    • 33747019547 scopus 로고    scopus 로고
    • Centering, scaling, and transformations: improving the biological information content of metabolomics data
    • van den Berg, R. A., Hoefsloot, H. C., Westerhuis, J. A., Smilde, A. K., & van der Werf, M. J. (2006). Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics, 7, 142-156.
    • (2006) BMC Genomics , vol.7 , pp. 142-156
    • van den Berg, R.A.1    Hoefsloot, H.C.2    Westerhuis, J.A.3    Smilde, A.K.4    van der Werf, M.J.5
  • 49
    • 42349111860 scopus 로고    scopus 로고
    • Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites
    • Winder, C. L., Dunn, W. B., Schuler, S., Broadhurst, D., Jarvis, R., Stephens, G. M., et al. (2008). Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites. Analytical Chemistry, 80(8), 2939-2948.
    • (2008) Analytical Chemistry , vol.80 , Issue.8 , pp. 2939-2948
    • Winder, C.L.1    Dunn, W.B.2    Schuler, S.3    Broadhurst, D.4    Jarvis, R.5    Stephens, G.M.6    Goodacre, R.7
  • 50
    • 1642374638 scopus 로고    scopus 로고
    • Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria
    • Wittmann, C., Kromer, J. O., Kiefer, P., Binz, T., & Heinzle, E. (2004). Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria. Analytical Biochemistry, 327(1), 135-139.
    • (2004) Analytical Biochemistry , vol.327 , Issue.1 , pp. 135-139
    • Wittmann, C.1    Kromer, J.O.2    Kiefer, P.3    Binz, T.4    Heinzle, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.