Development of loop-mediated isothermal amplification assay for specific and rapid detection of differential goat Pox virus and Sheep Pox virus

BMC Microbiology

Volumn 14, Issue 1, 2014, Pages

  Zhao, Zhixun ^a   Fan, Bin ^a   Wu, Guohua ^a   Yan, Xinmin ^a   Li, Yingguo ^b   Zhou, Xiaoli ^c   Yue, Hua ^d   Dai, Xueling ^e   Zhu, Haixia ^a   Tian, Bo ^a   Li, Jian ^a   Zhang, Qiang ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b International Travel Healthcare Center   (China)

^c Yunnan Entry Exit Inspection and Quarantine   (China)

^d SOUTHWEST UNIVERSITY FOR NATIONALITIES   (China)

^e Chinese Academy of Sciences   (China)

Author keywords

Differential diagnosis; Goat pox virus (GTPV); Inverted terminal repeat (ITR) regions; Loop mediated isothermal amplification (LAMP); Sheep pox virus (SPPV)

Indexed keywords

GENOMIC DNA; VIRUS DNA;

ANAPLASMA MARGINALE; ANIMAL TISSUE; ARTICLE; BABESIA; BACTERIUM ISOLATE; CAPRIPOXVIRUS; CHLAMYDOPHILA PSITTACI; CONTROLLED STUDY; CROSS REACTION; DIAGNOSTIC TEST ACCURACY STUDY; FOOT AND MOUTH DISEASE VIRUS; INVERTED TERMINAL REPEAT; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; MYCOPLASMA MYCOIDES; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POXVIRUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SENSITIVITY AND SPECIFICITY; THEILERIA; VIRUS DETECTION; VIRUS ISOLATION; ANIMAL EXPERIMENT; ANIMAL MODEL; CHLAMYDIA PSITTACI; DIFFERENTIAL DIAGNOSIS; GENOTYPE; GOATPOX; INCUBATION TIME; LEPTOSPIRA INTERROGANS; MYCOPLASMA MYCOIDES SUBSP. CAPRI; MYCOPLASMA OVIPNEUMONIAE; ORF VIRUS; SHEEPPOX; THEILERIA OVIS; TOXOPLASMA GONDII;

BABESIA; CAPRA HIRCUS; CHLAMYDOPHILA PSITTACI; FOOT-AND-MOUTH DISEASE VIRUS; GOATPOX VIRUS; LUMPY SKIN DISEASE VIRUS; MYCOPLASMA MYCOIDES SUBSP. CAPRI; ORF VIRUS; OVIS ARIES; POXVIRIDAE; SHEEPPOX VIRUS; THEILERIA OVIS;

ANIMALS; CAPRIPOXVIRUS; DIAGNOSIS, DIFFERENTIAL; DNA PRIMERS; GOATS; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; POXVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; SHEEP; TIME FACTORS; VETERINARY MEDICINE; VIROLOGY;

EID: 84892451846     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-14-10     Document Type: Article

References (28)

1. Development of a loop-mediated isothermal amplification assay for rapid detection of Capripoxviruses. Das A, Babiuk S, McIntosh MT, J Clin Microbiol 2012 50 1613 1620 10.1128/JCM.06796-11 22357504
2. Evaluation of duplex PCR and PCR-RFLP for diagnosis of sheep pox and goat pox. Fulzele S, Singh RK, Hosamani M, Mondal B, Yadav MP, Int J Trop Med 2006 1 66 70
3. Use of the capripoxvirus homologue of vaccinia virus 30 kDa RNA polymerase subunit (RPO30) gene as a novel diagnostic and genotyping target: development of a classical PCR method to differentiate Goat poxvirus from Sheep poxvirus. Lamien CE, Le Goff C, Silber R, Wallace DB, Gulyaz V, Tuppurainen E, Madani H, Caufour P, Adam T, Harrak ME, Luckins AG, Albina E, Diallo A, Vet Microbiol 2011 149 30 39 10.1016/j.vetmic.2010.09.038 21115310
4. Real time PCR method for simultaneous detection, quantitation and differentiation of capripoxviruses. Lamien CE, Lelenta M, Goger W, Silber R, Tuppurainen E, Matijevic M, Luckins AG, Diallo A, J Virol Methods 2011 171 134 140 10.1016/j.jviromet.2010.10.014 21029751
5. Discrimination of Goatpox virus and Sheeppox virus by digestion of p32 gene with Hif I andsequence alinment of GpCR gene. Yan XM, Zhang Q, Wu GH, Li J, Zhu HX, Anim Husbandry Feed Sci 2010 2 32 34,38
6. An outbreak of sheep pox associated with goat poxvirus in Gansu province of China. Yan XM, Chu YF, Wu GH, Zhao ZX, Li J, Zhu HX, Zhang Q, Vet Microbiol 2011 156 425 428 22169434
7. Development of a loop-mediated isothermal amplification method for rapid detection of porcine boca-like virus. Li B, Ma JJ, Xiao SB, Zhang XH, Wen LB, Mao L, Ni YX, Guo RL, Zhou JM, Lv LX, He KW, J Virol Methods 2012 179 390 395 10.1016/j.jviromet.2011.11.027 22172971
8. Loop-mediated isothermal amplifi cation (LAMP) method based on two species-speci fic primer sets for the rapid identifi cation of Chinese Babesia bovis and B. Bigemina. Liu A, Guan G, Du P, Gou H, Parasitol Int 2012 61 658 663 10.1016/j.parint.2012.07.004 22849831
9. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Nagamine K, Hase T, Notomi T, Mol Cell Probes 2002 16 223 229 10.1006/mcpr.2002.0415 12144774
10. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Mori Y, Nagamine K, Tomita N, Notomi T, Biochem Biophys Res Commun 2001 289 150 154 10.1006/bbrc.2001.5921 11708792
11. The genomes of sheeppox and goatpox. Tulman ER, Afonso CL, J Virol 2002 12 6054 6061
12. The nucleotide sequence around the Capri -poxvirus thymidine kinase gene reveals a gene shared specifically with leporipoxvirus. Gershon PD, Black DN, J Gen Virol 1989 70 525 533 10.1099/0022-1317-70-3-525 2732700
13. Poxvirus genetic recombination during natural virus transmission. Gershon PD, Kitching RP, Hammond JM, Black DN, J Gen Virol 1989 70 485 489 10.1099/0022-1317-70-2-485 2543750
14. The characterization of African strains of Capripoxvirus. Kitching RP, Bhat PP, Black DN, Epidemiol Infect 1989 102 335 343 10.1017/S0950268800030016 2539299
15. Improved detection of Capripoxvirus in biopsy samples by PCR. Ireland DC, Binepal YS, J Virol Methods 1989 74 1 7
16. A Capripoxvirus detection PCR and antibody ELISA based on the major antigen P32, the homolog of the vaccinia virus H3L gene. Heine HG, Stevens MP, Foord AJ, Boyle DB, J Immunol Methods 1999 227 187 196 10.1016/S0022-1759(99) 00072-1 10485266
17. Differentiation of sheep pox and goat poxviruses by sequence analysis and PCR-RFLP of P32 gene. Hosamani M, Mondal B, Tembhurne PA, Bandyopadhyay SK, Singh RK, Rasool TJ, Virus Genes 2004 29 73 80 15215685
18. Sheep poxvirus identification from clinical specimens by PCR, cell culture, immunofluorescence and agar gel immunoprecipitation assay. Mangana-Vougiouka O, Markoulatos P, Koptopoulos G, Nomikou K, Bakandritsos N, Papadopoulos P, Mol Cell Probes 2000 14 305 310 10.1006/mcpr.2000.0319 11040094
19. Detection of sheep poxvirus in skin biopsysamples by a multiplex polymerase chain reaction. Markoulatos P, Mangana-Vougiouka O, Koptopoulos G, Nomikou K, Papadopoulos O, J Virol Meth 2000 84 161 167 10.1016/S0166-0934(99) 00141-X
20. Differentiation of capripoxvirus species and strains by polymerase chain reaction. Orlova ES, Shcherbakova AV, Diev VI, Zakharov VM, Mol Biol (Mosk) 2006 40 158 164 16523702
21. The use of lumpy skin disease virus genome termini for detection and phylogenetic analysis. Stram Y, Kuznetzova L, Friedgut O, Gelman B, Yadin H, Rubinstein Guini M, J Virol Meth 2008 151 225 229 10.1016/j.jviromet.2008.05.003
22. Differentiation of sheeppox and goatpox viruses by polymerase chain reaction-restriction fragment length polymorphism. Venkatesan G, Balamuruganl V, Yogisharadhya R, Kumar A, Bhanuprakash V, Virologic Sinica 2012 6 353 359
23. A duplex PCR assay for simultaneous detection and differentiation of Capripoxvirus and Orf virus. Zheng M, Liu Q, Jin N, Guo J, Huang X, Li H, Zhu W, Xiong Y, Mol Cell Probes 2007 21 276 281 10.1016/j.mcp.2007.01.005 17350223
24. Rapid preclinical detection of sheeppox virus by a real-time PCR assay. Balinsky CA, Delhon G, Smoliga G, Prarat M, French RA, Geary SJ, Rock DL, Rodriguez LL, J Clin Microbiol 2008 46 438 442 10.1128/JCM.01953-07 18032617
25. Loop-mediated isothermal amplification of DNA. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T, Nucleic Acids Res 2000 12 63 63
26. Sensitive and rapid detection of infectious hypodermal and hematopoietic necrosis virus (IHHNV) in shrimps by loop-mediated isothermal amplification. Sun ZF, Hu CQ, Ren CH, Shen Q, J Virol Meth 2006 131 41 46 10.1016/j.jviromet.2005. 07.011
27. Specific detection of reverse transcription-loop-mediated isothermal amplification amplicons for Taura syndrome virus by colorimetric dot-blot hybridization. Teng PH, Chen CL, Sung PF, Lee FC, Ou BR, Lee PY, J Virol Meth 2007 146 317 326 10.1016/j.jviromet.2007.07.027
28. Species-specific loop-mediated isothermal amplification (LAMP) for diagnosis of trypanosomosis. Thekisoe OM, Kuboki N, Nambota A, Fujisaki K, Sugimoto C, Igarashi I, Yasuda J, Inoue N, Acta Trop 2007 102 182 189 10.1016/j.actatropica.2007.05.004 17574198