Development of a loop-mediated isothermal amplification method for rapid detection of porcine boca-like virus

Journal of Virological Methods

Volumn 179, Issue 2, 2012, Pages 390-395

  Li, Bin ^a,b,c   Ma, Jun jie ^a,b,c   Xiao, Shao bo ^d   Zhang, Xue han ^a,b,c   Wen, Li bin ^a,b,c   Mao, Li ^a,b,c   Ni, Yan xiu ^a,b,c   Guo, Rong li ^a,b,c   Zhou, Jun ming ^a,b,c   Lv, Li xin ^a,b,c   He, Kong wang ^a,b,c  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

^c National Center for Engineering Research of Veterinary Bio products   (China)

^d HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Detection; Loop mediated isothermal amplification (LAMP); PCR; Porcine boca like virus

Indexed keywords

FLUORESCENT DYE; PRIMER DNA; SYBR GREEN I; UNCLASSIFIED DRUG;

AGAR GEL ELECTROPHORESIS; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTERIVIRUS; ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; CROSS REACTION; DIAGNOSTIC TEST ACCURACY STUDY; DIAGNOSTIC VALUE; DNA SEQUENCE; INTERMETHOD COMPARISON; LIMIT OF DETECTION; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; LUNG; LYMPH NODE; NONHUMAN; PARVOVIRUS INFECTION; POLYMERASE CHAIN REACTION; PORCINE BOCA LIKE VIRUS; PORCINE BOCA LIKE VIRUS INFECTION; PORCINE PARVOVIRUS; PRIORITY JOURNAL; REACTION TEMPERATURE; SAMPLE; SENSITIVITY AND SPECIFICITY; SEQUENCE HOMOLOGY; TEMPERATURE; TONSIL; VIRUS DETECTION;

ANIMALS; BOCAVIRUS; CHINA; DNA PRIMERS; DNA, VIRAL; MOLECULAR DIAGNOSTIC TECHNIQUES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PARVOVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES; VETERINARY MEDICINE; VIROLOGY;

CLASSICAL SWINE FEVER VIRUS; PORCINE CIRCOVIRUS 2; PORCINE PARVOVIRUS; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; SUIDAE; SUS;

EID: 84855488259     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2011.11.027     Document Type: Article

References (30)

1. Allander T., Tammi M.T., Eriksson M., Bjerkner A., Tiveljung L.A., Andersson B. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:12891-12896.
2. Anderson L.J. Human bocavirus: a new viral pathogen. Clin. Infect. Dis. 2007, 44:911-912.
3. Blomstrom A.L., Belak S., Fossum C., Fuxler L., Wallgren P., Berg M. Studies of porcine circovirus type 2, porcine boca-like virus and torque teno virus indicate the presence of multiple viral infections in postweaning multisystemic wasting syndrome pigs. Virus Res. 2010, 152:59-64.
4. Blomstrom A.L., Belak S., Fossum C., Fuxler L., Wallgren P., Berg M. Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res. 2009, 146:125-129.
5. Chen A.Y., Cheng F., Lou S., Luo Y., Liu Z., Delwart E., Pintel D., Qiu J. Characterization of the gene expression profile of human bocavirus. Virology 2010, 403:145-154.
6. Chen C.M., Cui S.J. Detection of porcine parvovirus by loop-mediated isothermal amplification. J. Virol. Methods 2009, 155:122-125.
7. Chen H.T., Zhang J., Sun D.H., Chu Y.F., Cai X.P., Liu X.T., Luo X.N., Liu Q., Liu Y.S. Rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification. J. Virol. Methods 2008, 149:264-268.
8. Chen H.T., Zhang J., Sun D.H., Ma L.N., Liu X.T., Quan K., Liu Y.S. Reverse transcription loop-mediated isothermal amplification for the detection of highly pathogenic porcine reproductive and respiratory syndrome virus. J. Virol. Methods 2008, 153:266-268.
9. Chen H.T., Zhang J., Yang S.H., Ma L.N., Ma Y.P., Liu X.T., Cai X.P., Zhang Y.G., Liu Y.S. Rapid detection of porcine parvovirus DNA by sensitive loop-mediated isothermal amplification. J. Virol. Methods 2009, 158:100-103.
10. Chen K.C., Shull B.C., Lederman M., Stout E.R., Bates R.C. Analysis of the termini of the DNA of bovine parvovirus: demonstration of sequence inversion at the left terminus and its implication for the replication model. J. Virol. 1988, 62:3807-3813.
11. Chen K.C., Shull B.C., Moses E.A., Lederman M., Stout E.R., Bates R.C. Complete nucleotide sequence and genome organization of bovine parvovirus. J. Virol. 1986, 60:1085-1097.
12. Cheng W.X., Li J.S., Huang C.P., Yao D.P., Liu N., Cui S.X., Yu Jin Duan Z.J. Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS ONE 2010, 5(10):e13583.
13. Claude M., Fauquet M., Maniloff J., Desselberger U., Ball L.A. Virus Taxonomy: The Eighth Report of the International Committee on Taxonomy of Viruses 2004, Academic Press.
14. En F.X., Wei X., Jian L., Qin C. Loop-mediated isothermal amplification establishment for detection of pseudorabies virus. J. Virol. Methods 2008, 151:35-39.
15. Iwamoto T., Sonobe T., Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 2003, 41:2616-2622.
16. Jayawardena S., Cheung C.Y., Barr I., Chan K.H., Chen H., Guan Y., Peiris J.S., Poon L.L. Loop-mediated isothermal amplification for influenza A (H5N1) virus. Emerg. Infect. Dis. 2007, 13:899-901.
17. Kapoor A., Slikas E., Simmonds P., Chieochansin T., Naeem A., Shaukat S., Alam M.M., Sharif S., Angez M., Zaidi S., Delwart E. A newly identified bocavirus species in human stool. J. Infect. Dis. 2009, 199:196-200.
18. Kapoor A., Mehta N., Esper F., Poljsak P.M., Quan P.L., Qaisar N., Delwart E., Lipkin W.I. Identification and characterization of a new bocavirus species in gorillas. PLoS One 2010, 5:e11948.
19. Li B., Ma J.J., Xiao S.B., Fang L.R., Zeng S.L., Wen L.B., Zhang X.H., Ni Y.X., Guo R.L., Yu Z.Y., Zhou J.M., Mao A.H., Lv L.X., Wang X.M., He K.W. Complete genome sequence of a novel species of porcine bocavirus, PBoV5. J. Virol. 2012, 10.1128/JVI.06589-11.
20. Li B., Xiao S.B., Ma J.J., Liu Y.L., Mao L., Wen L.B., Mao A.H., Zhang X.H., Ni Y.X., Guo R.L., Zhou J.M., Yu Z.Y., Lv L.X., Wang X.M., Fang L.R., Chen H.C., He K.W. Development of a novel TaqMan-based real-time PCR assay for the detection of porcine boca-like virus (Pbo-likeV). Virol. J. 2011, 8(1):357.
21. Li Q., Zhou Q.F., Xue C.Y., Ma J.Y., Zhu D.Z., Cao Y.C. Rapid detection of porcine reproductive and respiratory syndrome virus by reverse transcription loop-mediated isothermal amplification assay. J. Virol. Methods 2009, 155:55-60.
22. Manteufel J., Truyen U. Animal bocaviruses: a brief review. Intervirology 2008, 51:328-334.
23. Mori Y., Nagamine K., Tomita N., Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 2001, 289:150-154.
24. Nagamine K., Kuzuhara Y., Notomi T. Isolation of single-stranded DNA from loop-mediated isothermal amplification products. Biochem. Biophys. Res. Commun. 2002, 290:1195-1198.
25. Notomi T., Masubuchi H., Yonekawa T., Watanabe K., Amino N., Hase T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28:63.
26. Shan T.L., Lan D.L., Li L.L., Wang C.M., Cui L., Zhang W., Hua X.G., Zhu C.X., Zhao W., Delwart E. Genomic characterization and high prevalence of bocaviruses in swine. PLoS One 2011, 6:e17292.
27. Yamada Y., Itoh M., Yoshida M. Sensitive and rapid diagnosis of human parvovirus B19 infection by loop-mediated isothermalamplification. Br. J. Dermatol. 2006, 155:50-55.
28. Zeng S.L., Wang D., Fang L.R., Ma J., Song T., Zhang R.X., Chen H.C., Xiao S.B. Complete coding sequences and phylogenetic analysis of porcine bocavirus (PBoV). J. Gen. Virol. 2011, 92:784-788.
29. Zhai S.L., Yue C., Wei Z.Z., Long J.X., Ran D.L., Lin T., Deng Y., Huang L., Sun L.C., Yuan S.S. High prevalence of a novel porcine bocavirus in weanling piglets with respiratory tract symptoms in China. Arch. Virol. 2010, 155:1313-1317.
30. Zhang X.J., Han Q.Y., Sun Y., Belák S., Liu L.H., Qiu H.J. Development of a loop-mediated isothermal amplification for visual detection of the HCLV vaccine against classical swine fever in China. J. Virol. Methods 2011, 171:200-205.