메뉴 건너뛰기




Volumn 19, Issue 1, 2014, Pages

Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer

Author keywords

breast cancer; collagen; fiber tracking; image processing; microscopy; second harmonic generation; segmentation

Indexed keywords

ALGORITHM PERFORMANCE; AUTOMATED TRACKING; BREAST CANCER; COLLAGEN STRUCTURE; FIBER TRACKING; IMAGE-PROCESSING ALGORITHMS; LOW SIGNAL-TO-NOISE RATIO; SECOND-HARMONIC;

EID: 84892145983     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.JBO.19.1.016007     Document Type: Article
Times cited : (287)

References (54)
  • 1
    • 0032763122 scopus 로고    scopus 로고
    • High-resolution nonlinear optical imaging of live cells by second harmonic generation
    • P. J. Campagnola et al., "High-resolution nonlinear optical imaging of live cells by second harmonic generation," Biophys. J. 77(6), 3341-3349 (1999).
    • (1999) Biophys. J. , vol.77 , Issue.6 , pp. 3341-3349
    • Campagnola, P.J.1
  • 4
    • 0345059766 scopus 로고    scopus 로고
    • Intravital imaging of cell movement in tumours
    • J. Condeelis and J. E. Segall, "Intravital imaging of cell movement in tumours," Nat. Rev. Cancer 3(12), 921-930 (2003). (Pubitemid 37500177)
    • (2003) Nature Reviews Cancer , vol.3 , Issue.12 , pp. 921-930
    • Condeelis, J.1    Segall, J.E.2
  • 6
    • 55749090063 scopus 로고    scopus 로고
    • Nonlinear optical imaging of cellular processes in breast cancer
    • P. P. Provenzano et al., "Nonlinear optical imaging of cellular processes in breast cancer," Microsc. Microanal. 14(6), 532-548 (2008).
    • (2008) Microsc. Microanal. , vol.14 , Issue.6 , pp. 532-548
    • Provenzano, P.P.1
  • 7
    • 79952747743 scopus 로고    scopus 로고
    • Aligned collagen is a prognostic signature for survival in human breast carcinoma
    • M. W. Conklin et al., "Aligned collagen is a prognostic signature for survival in human breast carcinoma," Am. J. Pathol. 178(3), 1221-1232 (2011).
    • (2011) Am. J. Pathol. , vol.178 , Issue.3 , pp. 1221-1232
    • Conklin, M.W.1
  • 9
    • 84859086913 scopus 로고    scopus 로고
    • Alterations of the extracellular matrix in ovarian cancer studied by second harmonic generation imaging microscopy
    • O. Nadiarnykh et al., "Alterations of the extracellular matrix in ovarian cancer studied by second harmonic generation imaging microscopy," BMC Cancer 10(94), 1-14 (2010).
    • (2010) BMC Cancer , vol.10 , Issue.94 , pp. 1-14
    • Nadiarnykh, O.1
  • 10
    • 84872040635 scopus 로고    scopus 로고
    • Analysis of second-harmonic-generation microscopy in a mouse model of ovarian carcinoma
    • J. M. Watson et al., "Analysis of second-harmonic-generation microscopy in a mouse model of ovarian carcinoma," J. Biomed. Opt. 17(7), 076002 (2012).
    • (2012) J. Biomed. Opt. , vol.17 , Issue.7 , pp. 076002
    • Watson, J.M.1
  • 11
    • 84861095232 scopus 로고    scopus 로고
    • Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy
    • R. Rezakhaniha et al., "Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy," Biomech. Model. Mechanobiol. 11(3-4), 461-473 (2012).
    • (2012) Biomech. Model. Mechanobiol. , vol.11 , Issue.3-4 , pp. 461-473
    • Rezakhaniha, R.1
  • 12
    • 84867289814 scopus 로고    scopus 로고
    • Collagen density promotes mammary tumor initiation and progression
    • P. P. Provenzano et al., "Collagen density promotes mammary tumor initiation and progression," BMC Med. 6(11), 1-15 (2008).
    • (2008) BMC Med. , vol.6 , Issue.11 , pp. 1-15
    • Provenzano, P.P.1
  • 13
    • 33846782878 scopus 로고    scopus 로고
    • Collagen reorganization at the tumor-stromal interface facilitates local invasion
    • P. P. Provenzano et al., "Collagen reorganization at the tumor-stromal interface facilitates local invasion," BMC Med. 4(38), 1-16 (2006).
    • (2006) BMC Med. , vol.4 , Issue.38 , pp. 1-16
    • Provenzano, P.P.1
  • 14
    • 58149263235 scopus 로고    scopus 로고
    • Analysis of collagen fibre shape changes in breast cancer
    • G. Falzon, S. Pearson, and R. Murison, "Analysis of collagen fibre shape changes in breast cancer," Phys. Med. Biol. 53(23), 6641-6652 (2008).
    • (2008) Phys. Med. Biol. , vol.53 , Issue.23 , pp. 6641-6652
    • Falzon, G.1    Pearson, S.2    Murison, R.3
  • 15
    • 66549090781 scopus 로고    scopus 로고
    • Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gels
    • C. Bayan et al., "Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gels," J. Appl. Phys. 105(10), 102042-102011 (2009).
    • (2009) J. Appl. Phys. , vol.105 , Issue.10 , pp. 102042-102011
    • Bayan, C.1
  • 17
    • 84856433494 scopus 로고    scopus 로고
    • Quantification of collagen organization using fractal dimensions and Fourier transforms
    • K. E. Frisch et al., "Quantification of collagen organization using fractal dimensions and Fourier transforms," Acta Histochem. 114(2), 140-144 (2012).
    • (2012) Acta Histochem. , vol.114 , Issue.2 , pp. 140-144
    • Frisch, K.E.1
  • 18
    • 84863866914 scopus 로고    scopus 로고
    • Imaging and 3D morphological analysis of collagen fibrils
    • H. Altendorf et al., "Imaging and 3D morphological analysis of collagen fibrils," J. Microsc. 247(2), 161-175 (2012).
    • (2012) J. Microsc. , vol.247 , Issue.2 , pp. 161-175
    • Altendorf, H.1
  • 19
    • 84863230387 scopus 로고    scopus 로고
    • Characterization of collagen fibers by means of texture analysis of second harmonic generation images using orientationdependent gray level co-occurrence matrix method
    • W. Hu et al., "Characterization of collagen fibers by means of texture analysis of second harmonic generation images using orientationdependent gray level co-occurrence matrix method," J. Biomed. Opt. 17(2), 026007 (2012).
    • (2012) J. Biomed. Opt. , vol.17 , Issue.2 , pp. 026007
    • Hu, W.1
  • 20
    • 70350345826 scopus 로고    scopus 로고
    • Shining new light on 3D cell motility and the metastatic process
    • P. P. Provenzano, K. W. Eliceiri, and P. J. Keely, "Shining new light on 3D cell motility and the metastatic process," Trends Cell Biol. 19(11), 638-648 (2009).
    • (2009) Trends Cell Biol. , vol.19 , Issue.11 , pp. 638-648
    • Provenzano, P.P.1    Eliceiri, K.W.2    Keely, P.J.3
  • 23
    • 57449101088 scopus 로고    scopus 로고
    • An algorithm for extracting the network geometry of three-dimensional collagen gels
    • A. M. Stein et al., "An algorithm for extracting the network geometry of three-dimensional collagen gels," J. Microsc. 232(3), 463-475 (2008).
    • (2008) J. Microsc. , vol.232 , Issue.3 , pp. 463-475
    • Stein, A.M.1
  • 24
    • 84857311234 scopus 로고    scopus 로고
    • This is SPIRAL-TAP: Sparse Poisson Intensity Reconstruction ALgorithms-Theory and Practice
    • Z. T. Harmany, R. F. Marcia, and R. M. Willett, "This is SPIRAL-TAP: Sparse Poisson Intensity Reconstruction ALgorithms-Theory and Practice," IEEE Trans. Image Process. 21(3), 1084-1096 (2012).
    • (2012) IEEE Trans. Image Process , vol.21 , Issue.3 , pp. 1084-1096
    • Harmany, Z.T.1    Marcia, R.F.2    Willett, R.M.3
  • 26
    • 0036612499 scopus 로고    scopus 로고
    • The curvelet transform for image denoising
    • DOI 10.1109/TIP.2002.1014998, PII S1057714902017347
    • J. L. Starck, E. J. Candès, and D. L. Donoho, "The curvelet transform for image denoising," IEEE Trans. Image Process. 11(6), 670-684 (2002). (Pubitemid 34814390)
    • (2002) IEEE Transactions on Image Processing , vol.11 , Issue.6 , pp. 670-684
    • Starck, J.-L.1    Candes, E.J.2    Donoho, D.L.3
  • 28
    • 85081803868 scopus 로고    scopus 로고
    • 15 February 2012
    • A. Stein, "FIRE FIbeR Extraction," http://www.ima.umn.edu/ ~astein/Andrew%20Stein/Software.html (15 February 2012).
    • FIRE FIbeR Extraction
    • Stein, A.1
  • 29
    • 32644436575 scopus 로고    scopus 로고
    • Effects of axial field components on second harmonic generation microscopy
    • DOI 10.1364/OE.14.001167
    • E. Y. S. Yew and C. J. R. Sheppard, "Effects of axial field components on second harmonic generation microscopy," Opt. Express 14(3), 1167-1174 (2006). (Pubitemid 43244434)
    • (2006) Optics Express , vol.14 , Issue.3 , pp. 1167-1174
    • Yew, E.Y.S.1    Sheppard, C.J.R.2
  • 30
    • 34249333067 scopus 로고    scopus 로고
    • Second harmonic generation polarization microscopy with tightly focused linearly and radially polarized beams
    • DOI 10.1016/j.optcom.2007.03.065, PII S0030401807003318
    • E. Y. S. Yew and C. J. R. Sheppard, "Second harmonic generation polarization microscopy with tightly focused linearly and radially polarized beams," Opt. Commun. 275(2), 453-457 (2007). (Pubitemid 46809951)
    • (2007) Optics Communications , vol.275 , Issue.2 , pp. 453-457
    • Yew, E.Y.S.1    Sheppard, C.J.R.2
  • 31
    • 35948946143 scopus 로고    scopus 로고
    • Quantification of the second-order nonlinear susceptibility of collagen i using a laser scanning microscope
    • A. Erikson et al., "Quantification of the second-order nonlinear susceptibility of collagen I using a laser scanning microscope," J. Biomed. Opt. 12(4), 1-10 (2007).
    • (2007) J. Biomed. Opt. , vol.12 , Issue.4 , pp. 1-10
    • Erikson, A.1
  • 32
    • 57049128693 scopus 로고    scopus 로고
    • Intravital imaging of metastatic behavior through a mammary imaging window
    • D. Kedrin et al., "Intravital imaging of metastatic behavior through a mammary imaging window," Nat. Methods 5(12), 1019-1021 (2008).
    • (2008) Nat. Methods , vol.5 , Issue.12 , pp. 1019-1021
    • Kedrin, D.1
  • 33
    • 84870739763 scopus 로고    scopus 로고
    • Dual tree complex wavelet transform based denoising of optical microscopy images
    • U. Bal, "Dual tree complex wavelet transform based denoising of optical microscopy images," Biomed. Opt. Express 3(12) (2012).
    • (2012) Biomed. Opt. Express , vol.3 , Issue.12
    • Bal, U.1
  • 34
    • 70350593691 scopus 로고    scopus 로고
    • Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems
    • A. Beck and M. Teboulle, "Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems," IEEE Trans. Image Process. 18(11), 2419-2434 (2009).
    • (2009) IEEE Trans. Image Process. , vol.18 , Issue.11 , pp. 2419-2434
    • Beck, A.1    Teboulle, M.2
  • 35
    • 84862520770 scopus 로고    scopus 로고
    • Fiji: An open-source platform for biological-image analysis
    • J. Schindelin et al., "Fiji: an open-source platform for biological-image analysis," Nat. Methods 9(7), 676-682 (2012).
    • (2012) Nat. Methods , vol.9 , Issue.7 , pp. 676-682
    • Schindelin, J.1
  • 36
    • 80051940280 scopus 로고    scopus 로고
    • Simple Neurite Tracer: Open source software for reconstruction, visualization and analysis of neuronal processes
    • M. H. Longair, D. A. Baker, and J. D. Armstrong, "Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes," Bioinformatics 27(17), 2453-2454 (2011).
    • (2011) Bioinformatics , vol.27 , Issue.17 , pp. 2453-2454
    • Longair D A Baker, M.H.1    Armstrong, J.D.2
  • 37
    • 0036836408 scopus 로고    scopus 로고
    • New multiscale transforms, minimum total variation synthesis: Applications to edge-preserving image reconstruction
    • E. J. Candes and F. Guo, "New multiscale transforms, minimum total variation synthesis: applications to edge-preserving image reconstruction," Signal Process. 82(11), 1519-1543 (2002).
    • (2002) Signal Process , vol.82 , Issue.11 , pp. 1519-1543
    • Candes, E.J.1    Guo, F.2
  • 39
    • 84945709355 scopus 로고
    • An algorithm for finding best matches in logarithmic expected time
    • J. H. Friedman, J. L. Bentley, and R. Ari Finkel, "An algorithm for finding best matches in logarithmic expected time," ACM Trans. Math. Software 3(3), 209-226 (1977).
    • (1977) ACM Trans. Math. Software , vol.3 , Issue.3 , pp. 209-226
    • Friedman, J.H.1    Bentley, J.L.2    Finkel, R.A.3
  • 40
    • 84871688029 scopus 로고    scopus 로고
    • Statistical tracking of tree-like tubular structures with efficient branching detection in 3D medical image data
    • X. Wang et al., "Statistical tracking of tree-like tubular structures with efficient branching detection in 3D medical image data," Phys. Med. Biol. 57(16), 5325-5342 (2012).
    • (2012) Phys. Med. Biol. , vol.57 , Issue.16 , pp. 5325-5342
    • Wang, X.1
  • 41
    • 78649674333 scopus 로고    scopus 로고
    • Tubular surface segmentation for extracting anatomical structures from medical imagery
    • V. Mohan, G. Sundaramoorthi, and A. Tannenbaum, "Tubular surface segmentation for extracting anatomical structures from medical imagery," IEEE Trans. Med. Imaging 29(12), 1945-1958 (2010).
    • (2010) IEEE Trans. Med. Imaging , vol.29 , Issue.12 , pp. 1945-1958
    • Mohan, V.1    Sundaramoorthi, G.2    Tannenbaum, A.3
  • 42
    • 75749128123 scopus 로고    scopus 로고
    • Multiple hypothesis template tracking of small 3D vessel structures
    • O. Friman et al., "Multiple hypothesis template tracking of small 3D vessel structures," Med. Image Anal. 14(2), 160-171 (2010).
    • (2010) Med. Image Anal. , vol.14 , Issue.2 , pp. 160-171
    • Friman, O.1
  • 43
    • 85032752378 scopus 로고    scopus 로고
    • The curvelet transform
    • J. Ma and G. Plonka, "The curvelet transform," IEEE Signal Process. Mag. 27(2), 118-133 (2010).
    • (2010) IEEE Signal Process. Mag. , vol.27 , Issue.2 , pp. 118-133
    • Ma, J.1    Plonka, G.2
  • 44
    • 79958130994 scopus 로고    scopus 로고
    • 3-D image pre-processing algorithms for improved automated tracing of neuronal arbors
    • A. Narayanaswamy, Y.Wang, and B. Roysam' "3-D image pre-processing algorithms for improved automated tracing of neuronal arbors," Neuroinformatics 9(2-3), 219-231 (2011).
    • (2011) Neuroinformatics , vol.9 , Issue.2-3 , pp. 219-231
    • Narayanaswamy, A.1    Wang, Y.2    Roysam, B.3
  • 45
    • 0027658896 scopus 로고
    • A review on image segmentation techniques
    • N. R. Pal and S. K. Pal, "A review on image segmentation techniques," Pattern Recognit. 26(9), 1277-1294 (1993).
    • (1993) Pattern Recognit. , vol.26 , Issue.9 , pp. 1277-1294
    • Pal, N.R.1    Pal, S.K.2
  • 47
    • 0022801395 scopus 로고
    • Connective-tissue polarity-optical 2nd-harmonic microscopy, crossed-beam summation, and smallangle scattering in rat-tail tendon
    • I. Freund, M. Deutsch, and A. Sprecher, "Connective-tissue polarity-optical 2nd-harmonic microscopy, crossed-beam summation, and smallangle scattering in rat-tail tendon," Biophys. J. 50(4), 693-712 (1986).
    • (1986) Biophys. J. , vol.50 , Issue.4 , pp. 693-712
    • Freund, I.1    Deutsch, M.2    Sprecher, A.3
  • 50
    • 84863238548 scopus 로고    scopus 로고
    • Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure
    • X. Y. Chen et al., "Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure," Nat. Protoc. 7(4), 654-669 (2012).
    • (2012) Nat. Protoc. , vol.7 , Issue.4 , pp. 654-669
    • Chen, X.Y.1
  • 51
    • 84869454450 scopus 로고    scopus 로고
    • Hierarchical model of fibrillar collagen organization for interpreting the second-order susceptibility tensors in biological tissue
    • A. E. Tuer et al., "Hierarchical model of fibrillar collagen organization for interpreting the second-order susceptibility tensors in biological tissue," Biophys. J. 103(10), 2093-2105 (2012).
    • (2012) Biophys. J. , vol.103 , Issue.10 , pp. 2093-2105
    • Tuer, A.E.1
  • 52
    • 84859972870 scopus 로고    scopus 로고
    • Generic model of the molecular orientational distribution probed by polarization-resolved second-harmonic generation
    • J. Duboisset et al., "Generic model of the molecular orientational distribution probed by polarization-resolved second-harmonic generation," Phys. Rev. A 85(4), 1-9 (2012).
    • (2012) Phys. Rev.A , vol.85 , Issue.4 , pp. 1-9
    • Duboisset, J.1
  • 53
    • 0242353872 scopus 로고    scopus 로고
    • Nonlinear magic: Multiphoton microscopy in the biosciences
    • DOI 10.1038/nbt899
    • W. R. Zipfel, R. M. Williams, and W. W. Webb, "Nonlinear magic: multiphoton microscopy in the biosciences," Nat. Biotechnol. 21(11), 1369-1377 (2003). (Pubitemid 37356624)
    • (2003) Nature Biotechnology , vol.21 , Issue.11 , pp. 1369-1377
    • Zipfel, W.R.1    Williams, R.M.2    Webb, W.W.3
  • 54
    • 67650505311 scopus 로고    scopus 로고
    • Fluorescence lifetime imaging of endogenous fluorophores in histopathology sections reveals differences between normal and tumor epithelium in carcinoma in situ of the breast
    • M. W. Conklin et al., "Fluorescence lifetime imaging of endogenous fluorophores in histopathology sections reveals differences between normal and tumor epithelium in carcinoma in situ of the breast," Cell Biochem. Biophys. 53(3), 145-157 (2009).
    • (2009) Cell Biochem. Biophys. , vol.53 , Issue.3 , pp. 145-157
    • Conklin, M.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.