Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gels

Journal of Applied Physics

Volumn 105, Issue 10, 2009, Pages

  Bayan, Christopher ^a   Levitt, Jonathan M ^a   Miller, Eric ^a   Kaplan, David ^a   Georgakoudi, Irene ^a  

^a Tufts University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE THRESHOLDING; AUTOMATED IMAGE ANALYSIS; AUTOMATED PROCEDURES; COLLAGEN FIBER; COLLAGEN GELS; COLLAGEN MATRICES; DISEASE DIAGNOSTICS; DYNAMIC NATURE; ENTROPY DISTRIBUTION; ENTROPY VALUE; GEL CONTRACTION; HIGH DENSITY; HIGH RESOLUTION IMAGE; HUMAN TISSUES; LOW DENSITY; MATRIX COMPONENTS; NOISE REMOVAL; NON-INVASIVE ASSESSMENTS; ORIENTATION INDEX; POWER DISTRIBUTIONS; QUANTITATIVE INFORMATION; SECOND HARMONIC GENERATION; TWO-DIMENSIONAL FOURIER TRANSFORM; USER INPUT;

AUTOMATION; BIOMECHANICS; BUILDING MATERIALS; CELL CULTURE; DEGRADATION; FIBERS; FIBROBLASTS; GELATION; GELS; HARMONIC GENERATION; HISTOLOGY; HOUGH TRANSFORMS; IMAGE ANALYSIS; MATRIX ALGEBRA; MECHANICAL PROPERTIES; NONLINEAR OPTICS; PROBABILITY DISTRIBUTIONS; TISSUE; TISSUE ENGINEERING;

COLLAGEN;

EID: 66549090781     PISSN: 00218979     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3116626     Document Type: Article

References (35)

1. T. Bogenrieder and M. Herlyn, Oncogene 0950-9232 22, 6524 (2003). 10.1038/sj.onc.1206757
2. C. J. Connon and K. M. Meek, Wound Repair Regen 1067-1927 11, 71 (2003). 10.1046/j.1524-475X.2003.11111.x
3. P. Friedl, Histochem. Cell Biol. 0948-6143 122, 183 (2004). 10.1007/s00418-004-0682-0
4. W. Friess, Eur. J. Pharm. Biopharm. 0939-6411 45, 113 (1998). 10.1016/S0939-6411(98)00017-4
5. K. Gelse, E. Poschl, and T. Aigner, Adv. Drug Delivery Rev. 0169-409X 55, 1531 (2003). 10.1016/j.addr.2003.08.002
6. D. E. Ingber, Differentiation 0301-4681 70, 547 (2002). 10.1046/j.1432-0436.2002.700908.x
7. N. E. Vrana, A. Elsheikh, N. Builles, O. Damour, and V. Hasirci, Biomaterials 0142-9612 28, 4303 (2007). 10.1016/j.biomaterials.2007.06.013
8. N. D. Kirkpatrick, S. Andreou, J. B. Hoying, and U. Utzinger, Am. J. Physiol. Heart Circ. Physiol. 0363-6135 292, H3198 (2007). 10.1152/ajpheart. 01234.2006
9. D. Arifler, I. Pavlova, A. Gillenwater, and R. Richards-Kortum, Biophys. J. 0006-3495 92, 3260 (2007). 10.1529/biophysj.106.089839
10. E. Brown, T. McKee, E. diTomaso, A. Pluen, B. Seed, Y. Boucher, and R. K. Jain, Nat. Med. 1078-8956 9, 796 (2003). 10.1038/nm879
11. P. Friedl, K. Maaser, C. E. Klein, B. Niggemann, G. Krohne, and K. S. Zanker, Cancer Res. 0008-5472 57, 2061 (1997).
12. P. P. Provenzano, K. W. Eliceiri, J. M. Campbell, D. R. Inman, J. G. White, and P. J. Keely, BMC Med. 4, 38 (2006). 10.1186/1741-7015-4-38 1741-7015
13. P. J. Campagnola and L. M. Loew, Nat. Biotechnol. 1087-0156 21, 1356 (2003). 10.1038/nbt894
14. R. M. Williams, W. R. Zipfel, and W. W. Webb, Biophys. J. 0006-3495 88, 1377 (2005). 10.1529/biophysj.104.047308
15. A. T. Yeh, N. Nassif, A. Zoumi, and B. J. Tromberg, Opt. Lett. 0146-9592 27, 2082 (2002). 10.1364/OL.27.002082
16. A. Zoumi, A. Yeh, and B. J. Tromberg, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 99, 11014 (2002). 10.1073/pnas.172368799
17. C. B. Raub, V. Suresh, T. Krasieva, J. Lyubovitsky, J. D. Mih, A. J. Putnam, B. J. Tromberg, and S. C. George, Biophys. J. 0006-3495 92, 2212 (2007). 10.1529/biophysj.106.097998
18. C. B. Raub, J. Unruh, V. Suresh, T. Krasieva, T. Lindmo, E. Gratton, B. J. Tromberg, and S. C. George, Biophys. J. 0006-3495 94, 2361 (2008). 10.1529/biophysj.107.120006
19. P. Stoller, K. M. Reiser, P. M. Celliers, and A. M. Rubenchik, Biophys. J. 0006-3495 82, 3330 (2002). 10.1016/S0006-3495(02)75673-7
20. N. D. Kirkpatrick, M. A. Brewer, and U. Utzinger, Cancer Epidemiol. Biomarkers Prev. 1055-9965 16, 2048 (2007). 10.1158/1055-9965.EPI-07-0009
21. N. D. Kirkpatrick, J. B. Hoying, S. K. Botting, J. A. Weiss, and U. Utzinger, J. Biomed. Opt. 1083-3668 11, 054021 (2006). 10.1117/1.2360516
22. P. Stoller, B. M. Kim, A. M. Rubenchik, K. M. Reiser, and L. B. Da Silva, J. Biomed. Opt. 1083-3668 7, 205 (2002). 10.1117/1.1431967
23. A. Kim, N. Lakshman, and W. M. Petroll, Exp. Cell Res. 0014-4827 312, 3683 (2006). 10.1016/j.yexcr.2006.08.009
24. R. Gonzalez and R. Woods, Digital Image Processing (Prentice-Hall, Upper Saddle River, NJ, 2002).
25. T. L. Ponsioen, M. J. van Luyn, R. J. van der Worp, J. C. van Meurs, J. M. Hooymans, and L. I. Los, Invest. Ophthalmol. Visual Sci. 49, 4089 (2008). 10.1167/iovs.07-1456
26. P. D. Damoulis, D. E. Drakos, E. Gagari, and D. L. Kaplan, Ann. N.Y. Acad. Sci. 0077-8923 1117, 367 (2007). 10.1196/annals.1402.038
27. H. E. Gruber, J. A. Ingram, D. E. Davis, and E. N. Hanley, Eur. Spine J. 9, 210 (2009). 10.1016/j.spinee.2008.01.012
28. H. L. Quasnichka, J. F. Tarlton, J. M. Anderson-Mackenzie, M. E. Billingham, A. J. Bailey, and A. R. Pickford, J. Immunol. Methods 0022-1759 297, 133 (2005). 10.1016/j.jim.2004.12.016
29. L. C. Abraham, J. F. Dice, P. F. Finn, N. T. Mesires, K. Lee, and D. L. Kaplan, Biomaterials 0142-9612 28, 151 (2007). 10.1016/j.biomaterials.2006.07. 001
30. F. Gobeaux, G. Mosser, A. Anglo, P. Panine, P. Davidson, M. M. Giraud-Guille, and E. Belamie, J. Mol. Biol. 0022-2836 376, 1509 (2008). 10.1016/j.jmb.2007.12.047
31. R. Newton, J. Haffegee, and M. Ho, J. Microsc. 0022-2720 180, 127 (1995).
32. J. Wu, B. Rajwa, D. L. Filmer, C. M. Hoffmann, B. Yuan, C. Chiang, J. Sturgis, and J. P. Robinson, J. Microsc. 0022-2720 210, 158 (2003). 10.1046/j.1365-2818.2003.01191.x
33. A. Erikson, J. Örtegren, T. Hompland, C. de Lange Davies, and M. Lindgren, J. Biomed. Opt. 1083-3668 12, 044002 (2007). 10.1117/1.2772311
34. P. Stoller, P. M. Celliers, K. M. Reiser, and A. M. Rubenchik, Appl. Opt. 0003-6935 42, 5209 (2003). 10.1364/AO.42.005209
35. A. M. Pena, A. Fabre, D. Debarre, J. Marchal-Somme, B. Crestani, J. L. Martin, E. Beaurepaire, and M. C. Schanne-Klein, Microsc. Res. Tech. 1059-910X 70, 162 (2007). 10.1002/jemt.20400