-
1
-
-
9144253940
-
Arabidopsis kinome: After the casting
-
DOI 10.1007/s10142-003-0096-4
-
Champion A, Kreis M, Mockaitis K, Picaud A, Henry Y (2004) Arabidopsis kinome: after the casting. Funct Integr Genomics 4:163-187. (Pubitemid 41166575)
-
(2004)
Functional and Integrative Genomics
, vol.4
, Issue.3
, pp. 163-187
-
-
Champion, A.1
Kreis, M.2
Mockaitis, K.3
Picaud, A.4
Henry, Y.5
-
2
-
-
77953184082
-
Calcium signals: The lead currency of plant information processing
-
Kudla J, Batistic O, Hashimoto K (2010) Calcium signals: the lead currency of plant information processing. Plant cell 22:541-563.
-
(2010)
Plant Cell
, vol.22
, pp. 541-563
-
-
Kudla, J.1
Batistic, O.2
Hashimoto, K.3
-
3
-
-
34447308527
-
Structure and functions of plant calcium-dependent protein kinases
-
Klimecka M, Muszyńska G (2007) Structure and functions of plant calciumdependent protein kinases. Acta Biochim Pol 54:219-233. (Pubitemid 47057865)
-
(2007)
Acta Biochimica Polonica
, vol.54
, Issue.2
, pp. 219-233
-
-
Klimecka, M.1
Muszynska, G.2
-
4
-
-
0030200110
-
PEST sequences and regulation by proteolysis
-
DOI 10.1016/0968-0004(96)10031-1
-
Rechsteiner M, Rogers SW (1996) PEST sequences and regulation by proteolysis. Trends Biochem Sci 21:267-271. (Pubitemid 26228278)
-
(1996)
Trends in Biochemical Sciences
, vol.21
, Issue.7
, pp. 267-271
-
-
Rechsteiner, M.1
Rogers, S.W.2
-
5
-
-
77951944746
-
Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium
-
Wernimont AK, Artz J D F P Jr, Lin Y, Amani M, et al. (2010) Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium. Nat Struct Biol 17:596-601.
-
(2010)
Nat Struct Biol
, vol.17
, pp. 596-601
-
-
Wernimont, A.K.1
Artz Jr., J.D.F.P.2
Lin, Y.3
Amani, M.4
-
6
-
-
33745711858
-
A phyloproteomic characterization of in vitro autophosphorylation in calcium-dependent protein kinases
-
DOI 10.1002/pmic.200500926
-
Hegeman AD, Rodriguez M, Han BW, Uno Y, Phillips G N J, et al. (2006) A phyloproteomic characterization of in vitro autophosphorylation in calciumdependent protein kinases. Proteomics 6:3649-3664. (Pubitemid 44000192)
-
(2006)
Proteomics
, vol.6
, Issue.12
, pp. 3649-3664
-
-
Hegeman, A.D.1
Rodriguez, M.2
Han, B.W.3
Uno, Y.4
Phillips Jr., G.N.5
Hrabak, E.M.6
Cushman, J.C.7
Harper, J.F.8
Harmon, A.C.9
Sussman, M.R.10
-
7
-
-
0034164067
-
2+ signal?
-
DOI 10.1016/S1360-1385(00)01577-6, PII S1360138500015776
-
Harmon AC, Gribskov M, Harper JF (2000) CDPKs-a kinase for every Ca2+ signal? Trends Plant Sci 5:154-159. (Pubitemid 30192272)
-
(2000)
Trends in Plant Science
, vol.5
, Issue.4
, pp. 154-159
-
-
Harmon, A.C.1
Gribskov, M.2
Harper, J.F.3
-
8
-
-
84865071857
-
Diversity, classification and function of the plant protein kinase superfamily
-
Lehti-Shiu MD, Shiu S (2012) Diversity, classification and function of the plant protein kinase superfamily. Phil Trans R Soc B: 2619-2639.
-
(2012)
Phil Trans R Soc B
, pp. 2619-2639
-
-
Lehti-Shiu, M.D.1
Shiu, S.2
-
9
-
-
0038377588
-
The Arabidopsis CDPK-SnRK superfamily of protein kinases
-
DOI 10.1104/pp.102.011999
-
Hrabak EM, Chan C W M, Gribskov M, Harper JF, Choi JH, et al. (2003) The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol 132:666-680. (Pubitemid 36725704)
-
(2003)
Plant Physiology
, vol.132
, Issue.2
, pp. 666-680
-
-
Hrabak, E.M.1
Chan, C.W.M.2
Gribskov, M.3
Harper, J.F.4
Choi, J.H.5
Halford, N.6
Kudla, J.7
Luan, S.8
Nimmo, H.G.9
Sussman, M.R.10
Thomas, M.11
Walker-Simmons, K.12
Zhu, J.-K.13
Harmon, A.C.14
-
10
-
-
84873995122
-
CDPKs in immune and stress signaling
-
Boudsocq M, Sheen J (2012) CDPKs in immune and stress signaling. Trends Plant Sci: 1-11.
-
(2012)
Trends Plant Sci
, pp. 1-11
-
-
Boudsocq, M.1
Sheen, J.2
-
11
-
-
33745150370
-
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: Effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
-
Jansen RK, Kaittanis C, Saski C, Lee S-B, Tomkins J, et al. (2006) Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 14:1-14.
-
(2006)
BMC Evol Biol
, vol.14
, pp. 1-14
-
-
Jansen, R.K.1
Kaittanis, C.2
Saski, C.3
Lee, S.-B.4
Tomkins, J.5
-
12
-
-
84855655273
-
Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes
-
Malacarne G, Perazzolli M, Cestaro A, Sterck L, Fontana P, et al. (2012) Deconstruction of the (paleo) polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes. PLoS ONE 7:e29762.
-
(2012)
PLoS ONE
, vol.7
-
-
Malacarne, G.1
Perazzolli, M.2
Cestaro, A.3
Sterck, L.4
Fontana, P.5
-
13
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillón O, Aury J-M, Noel B, Policriti A, Clepet C, et al. (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-468.
-
(2007)
Nature
, vol.449
, pp. 463-468
-
-
Jaillón, O.1
Aury, J.-M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
-
14
-
-
79955630390
-
Ancestral polyploidy in seed plants and angiosperms
-
Jiao Y, Wickett N, Ayyampalayam S, Chanderbali AS, Landherr L, et al. (2011) Ancestral polyploidy in seed plants and angiosperms. Nature 473:97-102.
-
(2011)
Nature
, vol.473
, pp. 97-102
-
-
Jiao, Y.1
Wickett, N.2
Ayyampalayam, S.3
Chanderbali, A.S.4
Landherr, L.5
-
15
-
-
34250222461
-
Expression of a grape calcium-dependent protein kinase ACPK1 in Arabidopsis thaliana promotes plant growth and confers abscisic acid-hypersensitivity in germination, postgermination growth, and stomatal movement
-
DOI 10.1007/s11103-007-9172-9
-
Yu X-C, Zhu S, Gao G-F, Wang X-J, Zhao R, et al. (2007) Expression of a grape calcium-dependent protein kinase ACPK1 in Arabidopsis thaliana promotes plant growth and confers abscisic acid-hypersensitivity in germination, postgermination growth, and stomatal movement. Plant Mol Biol 64:531-538. (Pubitemid 46897334)
-
(2007)
Plant Molecular Biology
, vol.64
, Issue.5
, pp. 531-538
-
-
Yu, X.-C.1
Zhu, S.-Y.2
Gao, G.-F.3
Wang, X.-J.4
Zhao, R.5
Zou, K.-Q.6
Wang, X.-F.7
Zhang, X.-Y.8
Wu, F.-Q.9
Peng, C.-C.10
Zhang, D.-P.11
-
16
-
-
0029347053
-
A carrot cDNA encoding an atypical protein kinase homologous to plant calcium-dependent protein kinases
-
Lindzen E, Choi JH (1995) A carrot cDNA encoding an atypical protein kinase homologous to plant calcium-dependent protein kinases. Plant Mol Biol 28:785-797.
-
(1995)
Plant Mol Biol
, vol.28
, pp. 785-797
-
-
Lindzen, E.1
Choi, J.H.2
-
17
-
-
67349152789
-
Expression profile of calciumdependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L ssp indica)
-
Ye S, Wang L, Xie W, Wan B, Li X, et al. (2009) Expression profile of calciumdependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L.ssp. indica). Plant Mol Biol 70:311-325.
-
(2009)
Plant Mol Biol
, vol.70
, pp. 311-325
-
-
Ye, S.1
Wang, L.2
Xie, W.3
Wan, B.4
Li, X.5
-
18
-
-
84862777561
-
A genome triplication associated with early diversification of the core eudicots
-
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, et al. (2012) A genome triplication associated with early diversification of the core eudicots. Genome Biol 13:R3.
-
(2012)
Genome Biol
, vol.13
-
-
Jiao, Y.1
Leebens-Mack, J.2
Ayyampalayam, S.3
Bowers, J.E.4
McKain, M.R.5
-
19
-
-
84863230177
-
Phylogeny and molecular evolution of the green algae
-
Leliaert F, Smith DR, Moreau H, Herron MD, Verbruggen H, et al. (2012) Phylogeny and molecular evolution of the green algae. Crit Rev Plant Sci 31:1-46.
-
(2012)
Crit Rev Plant Sci
, vol.31
, pp. 1-46
-
-
Leliaert, F.1
Smith, D.R.2
Moreau, H.3
Herron, M.D.4
Verbruggen, H.5
-
20
-
-
33751112491
-
Divergence of the dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication
-
DOI 10.1104/pp.106.083642
-
Yang X, Tuskan GA, Cheng MZ (2006) Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication. Plant Physiol 142:820-830. (Pubitemid 44764611)
-
(2006)
Plant Physiology
, vol.142
, Issue.3
, pp. 820-830
-
-
Yang, X.1
Tuskan, G.A.2
Cheng, Z.-M.3
-
21
-
-
33344470261
-
Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): A novel mode of calmodulin-target recognition
-
DOI 10.1016/j.jmb.2005.11.093, PII S0022283605015603
-
Chandran V, Stollar EJ, Lindorff-Larsen K, Harper JF, Chazin WJ, et al. (2006) Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): a novel mode of calmodulin-target recognition. J Mol Biol: 400-410. (Pubitemid 43290743)
-
(2006)
Journal of Molecular Biology
, vol.357
, Issue.2
, pp. 400-410
-
-
Chandran, V.1
Stollar, E.J.2
Lindorff-Larsen, K.3
Harper, J.F.4
Chazin, W.J.5
Dobson, C.M.6
Luisi, B.F.7
Christodoulou, J.8
-
22
-
-
84868110135
-
The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
-
Fasoli M, Dal Santo S, Zeroni S, Tornielli GB, Farina L, et al. (2012) The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program. Plant Cell 24:3489-3505.
-
(2012)
Plant Cell
, vol.24
, pp. 3489-3505
-
-
Fasoli, M.1
Dal Santo, S.2
Zeroni, S.3
Tornielli, G.B.4
Farina, L.5
-
23
-
-
33745471970
-
Calcium-dependent protein kinase isoforms in Petunia have distinct functions in pollen tube growth, including regulating polarity
-
DOI 10.1105/tpc.105.037135
-
Yoon GM, Dowd PE, Gilroy S, McCubbin AG (2006) Calcium-dependent protein kinase isoforms in petunia have distinct functions in pollen tube growth, including regulating polarity. Plant Cell 18:867-878. (Pubitemid 43956141)
-
(2006)
Plant Cell
, vol.18
, Issue.4
, pp. 867-878
-
-
Yoon, G.M.1
Dowd, P.E.2
Gilroy, S.3
McCubbin, A.G.4
-
24
-
-
77954696777
-
Grapevine under deficit irrigation: Hints from physiological and molecular data
-
Chaves MM, Zarrouk O, Francisco R, Costa JM, Santos T, et al. (2010) Grapevine under deficit irrigation: hints from physiological and molecular data. Ann Bot 105:661-676.
-
(2010)
Ann Bot
, vol.105
, pp. 661-676
-
-
Chaves, M.M.1
Zarrouk, O.2
Francisco, R.3
Costa, J.M.4
Santos, T.5
-
25
-
-
67349152789
-
Expression profile of rice CDPKs during the whole lifespan.pdf
-
Ye S, Wang L, Xie W, Wan B, Ae XL, et al. (2009) Expression profile of rice CDPKs during the whole lifespan.pdf. Plant Mol Biol 70:311-325.
-
(2009)
Plant Mol Biol
, vol.70
, pp. 311-325
-
-
Ye, S.1
Wang, L.2
Xie, W.3
Wan, B.4
Ae, X.L.5
-
27
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
DOI 10.1098/rspb.1994.0058
-
Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc Biol Sci 256:119-124. (Pubitemid 24168165)
-
(1994)
Proceedings of the Royal Society B: Biological Sciences
, vol.256
, Issue.1346
, pp. 119-124
-
-
Hughes, A.L.1
-
28
-
-
21344439563
-
Subfunctionalization of duplicated genes as a transition state to neofunctionalization
-
Rastogi S, Liberles DA (2005) Subfunctionalization of duplicated genes as a transition state to neofunctionalization. BMC Evol Biol 5:28.
-
(2005)
BMC Evol Biol
, vol.5
, pp. 28
-
-
Rastogi, S.1
Liberles, D.A.2
-
29
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy SR (2011) Accelerated profile HMM searches. PLoS Comput Biol 7:e1002195.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Eddy, S.R.1
-
30
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinf 5:113.
-
(2004)
BMC Bioinf
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
31
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
32
-
-
34248669040
-
KaKs-calculator: Calculating ka and ks through model selection and model averaging
-
DOI 10.1016/S1672-0229(07)60007-2, PII S1672022907600072
-
Zhang Z, Li J, Zhao X, Wang J, Wong GK, et al. (2006) KaKs Calculator?: calculating Ka and Ks through model selection and model averaging. Geno Prot Bioinfor 4:259-263. (Pubitemid 46771391)
-
(2006)
Genomics, Proteomics and Bioinformatics
, vol.4
, Issue.4
, pp. 259-263
-
-
Zhang, Z.1
Li, J.2
Zhao, X.-Q.3
Wang, J.4
Wong, G.K.-S.5
Yu, J.6
-
33
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR)
-
Remarkers C, Ruijter J, Deprez R, Moorman A (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR). Neurosci Lett 339:2003.
-
(2003)
Neurosci Lett
, vol.339
, pp. 2003
-
-
Remarkers, C.1
Ruijter, J.2
Deprez, R.3
Moorman, A.4
-
34
-
-
17344392308
-
A new mathematical model for relative quantification in realtime RT-PCR
-
Pfaffl MW (2001) A new mathematical model for relative quantification in realtime RT-PCR. Nucleic Acids Res 29:16-21.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 16-21
-
-
Pfaffl, M.W.1
|