메뉴 건너뛰기




Volumn 201, Issue 3, 2014, Pages 1021-1030

Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: Neither from Jerusalem nor an artichoke

Author keywords

Allopolyploid speciation; Phylogenomics; Polyploid parentage; Polyploidy; Ultra barcoding

Indexed keywords

DICOTYLEDON; GENOME; HYBRIDIZATION; PERENNIAL PLANT; PHYLOGENETICS; PLOIDY; POLYPLOIDY; SPECIATION (BIOLOGY);

EID: 84891903097     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12560     Document Type: Article
Times cited : (129)

References (54)
  • 1
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood ratio test for branches: a fast, accurate and powerful alternative
    • Anisimova M, Gascuel O. 2006. Approximate likelihood ratio test for branches: a fast, accurate and powerful alternative. Systematic Biology 55: 539-552.
    • (2006) Systematic Biology , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 3
    • 84989152395 scopus 로고
    • Meiosis and pollen viability in Helianthus tuberosus L. and its hybrids with cultivated sunflower
    • Atlagić J, Dozet B, Škorić D. 1993. Meiosis and pollen viability in Helianthus tuberosus L. and its hybrids with cultivated sunflower. Plant Breeding 111: 318-324.
    • (1993) Plant Breeding , vol.111 , pp. 318-324
    • Atlagić, J.1    Dozet, B.2    Škorić, D.3
  • 4
    • 84891903705 scopus 로고    scopus 로고
    • Cytogenetic study of hexaploid species Helianthus tuberosus and its F1 and BC1F1 hybrids with cultivated sunflower, H. annuus
    • Atlagić J, Škorić D. 2006. Cytogenetic study of hexaploid species Helianthus tuberosus and its F1 and BC1F1 hybrids with cultivated sunflower, H. annuus. Genetika 38: 203-213.
    • (2006) Genetika , vol.38 , pp. 203-213
    • Atlagić, J.1    Škorić, D.2
  • 5
    • 0026138226 scopus 로고
    • Cultivation and utilization of Jerusalem artichoke for ethanol, single cell protein, and high fructose syrup production
    • Bajpai PK, Bajpai P. 1991. Cultivation and utilization of Jerusalem artichoke for ethanol, single cell protein, and high fructose syrup production. Enzyme and Microbial Technology 13: 359-362.
    • (1991) Enzyme and Microbial Technology , vol.13 , pp. 359-362
    • Bajpai, P.K.1    Bajpai, P.2
  • 7
    • 67449132599 scopus 로고    scopus 로고
    • Biodiesel production from Jerusalem artichoke (Helianthus tuberosus L.) tuber by heterotrophic microalgae Chlorella protothecoides
    • Cheng Y, Zhou W, Gao C, Lan K, Gao Y, Wu Q. 2009. Biodiesel production from Jerusalem artichoke (Helianthus tuberosus L.) tuber by heterotrophic microalgae Chlorella protothecoides. Journal of Chemical Technology and Biotechnology 84: 777-781.
    • (2009) Journal of Chemical Technology and Biotechnology , vol.84 , pp. 777-781
    • Cheng, Y.1    Zhou, W.2    Gao, C.3    Lan, K.4    Gao, Y.5    Wu, Q.6
  • 10
    • 38449104378 scopus 로고    scopus 로고
    • Estimation of nuclear DNA content in plants using flow cytometry
    • Doležel J, Greilhuber J, Suda J. 2007. Estimation of nuclear DNA content in plants using flow cytometry. Nature Protocols 2: 2233-2244.
    • (2007) Nature Protocols , vol.2 , pp. 2233-2244
    • Doležel, J.1    Greilhuber, J.2    Suda, J.3
  • 11
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
    • (1987) Phytochemical Bulletin , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 13
    • 0026657921 scopus 로고
    • Molecular phylogeny of the Helianthus genus, based on nuclear restriction fragment-length-polymorphism (RFLP)
    • Gentzbittel L, Perrault A, Nicolas P. 1992. Molecular phylogeny of the Helianthus genus, based on nuclear restriction fragment-length-polymorphism (RFLP). Molecular Biology and Evolution 9: 872-892.
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 872-892
    • Gentzbittel, L.1    Perrault, A.2    Nicolas, P.3
  • 15
    • 33745495721 scopus 로고    scopus 로고
    • Allopolyploid origin of the Mediterranean endemic, Centaurium bianoris (Gentianaceae), inferred by molecular markers
    • Guggisberg A, Bretagnolle F, Mansion G. 2006. Allopolyploid origin of the Mediterranean endemic, Centaurium bianoris (Gentianaceae), inferred by molecular markers. Systematic Botany 31: 368-379.
    • (2006) Systematic Botany , vol.31 , pp. 368-379
    • Guggisberg, A.1    Bretagnolle, F.2    Mansion, G.3
  • 16
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
    • (2003) Systematic Biology , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 0004201741 scopus 로고
    • Norman, OK, USA: University of Oklahoma Press
    • Heiser CB. 1976. The sunflower. Norman, OK, USA: University of Oklahoma Press.
    • (1976) The sunflower
    • Heiser, C.B.1
  • 18
    • 0001013299 scopus 로고
    • Species crosses in Helianthus: II. Polyploid species
    • Heiser CB, Smith DM. 1964. Species crosses in Helianthus: II. Polyploid species. Rhodora 66: 344-358.
    • (1964) Rhodora , vol.66 , pp. 344-358
    • Heiser, C.B.1    Smith, D.M.2
  • 20
    • 1042301837 scopus 로고    scopus 로고
    • Reproductive isolation between autotetraploids and their diploid progenitors in fireweed, Chamerion angustifolium (Onagraceae)
    • Husband BC, Sabara HA. 2003. Reproductive isolation between autotetraploids and their diploid progenitors in fireweed, Chamerion angustifolium (Onagraceae). New Phytologist 161: 703-713.
    • (2003) New Phytologist , vol.161 , pp. 703-713
    • Husband, B.C.1    Sabara, H.A.2
  • 21
    • 57349094376 scopus 로고    scopus 로고
    • Botany without borders, barcoding in focus
    • Kane NC, Cronk Q. 2008. Botany without borders, barcoding in focus. Molecular Ecology 17: 5175-5176.
    • (2008) Molecular Ecology , vol.17 , pp. 5175-5176
    • Kane, N.C.1    Cronk, Q.2
  • 23
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 286-298.
    • (2008) Briefings in Bioinformatics , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 28
    • 10344247757 scopus 로고
    • A contribution to the meiosis of Helianthus tuberosus L
    • Kostoff D. 1934. A contribution to the meiosis of Helianthus tuberosus L. Zeitschr fur Pflanzenzüchtung 19: 423-438.
    • (1934) Zeitschr fur Pflanzenzüchtung , vol.19 , pp. 423-438
    • Kostoff, D.1
  • 29
    • 34250589564 scopus 로고
    • Autosyndesis and structural hybridity in F1-hybrid Helianthus tuberosus L. × Helianthus annuus L. and their sequences
    • Kostoff D. 1939. Autosyndesis and structural hybridity in F1-hybrid Helianthus tuberosus L. × Helianthus annuus L. and their sequences. Genetica 21: 285-300.
    • (1939) Genetica , vol.21 , pp. 285-300
    • Kostoff, D.1
  • 30
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods 9: 357-359.
    • (2012) Nature Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 31
    • 36249024411 scopus 로고
    • Hybridization between the perennial sunflowers Helianthus salicifolius A. Dietr. and H. grosseserratus Martens
    • Long RW. 1955. Hybridization between the perennial sunflowers Helianthus salicifolius A. Dietr. and H. grosseserratus Martens. American Midland Naturalist 54: 61-64.
    • (1955) American Midland Naturalist , vol.54 , pp. 61-64
    • Long, R.W.1
  • 32
    • 77956868619 scopus 로고    scopus 로고
    • Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids
    • Malinska H, Tate JA, Matyasek R, Leitch AR, Soltis DE, Soltis PS, Kovarik A. 2010. Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids. BMC Evolutionary Biology 10: 291.
    • (2010) BMC Evolutionary Biology , vol.10 , pp. 291
    • Malinska, H.1    Tate, J.A.2    Matyasek, R.3    Leitch, A.R.4    Soltis, D.E.5    Soltis, P.S.6    Kovarik, A.7
  • 35
    • 0001907141 scopus 로고
    • Phylogenetic consequences of cytoplasmic gene flow in plants
    • Rieseberg LH, Soltis DE. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evolutionary Trends in Plants 5: 65-84.
    • (1991) Evolutionary Trends in Plants , vol.5 , pp. 65-84
    • Rieseberg, L.H.1    Soltis, D.E.2
  • 36
    • 35848940262 scopus 로고    scopus 로고
    • Inulin-type fructans: functional food
    • Roberfroid MB. 2007. Inulin-type fructans: functional food. Journal of Nutrition 137: 2493S-2502S.
    • (2007) Journal of Nutrition , vol.137
    • Roberfroid, M.B.1
  • 38
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 40
    • 0031005443 scopus 로고    scopus 로고
    • Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data
    • Schilling EE. 1997. Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data. Theoretical and Applied Genetics 94: 925-933.
    • (1997) Theoretical and Applied Genetics , vol.94 , pp. 925-933
    • Schilling, E.E.1
  • 41
    • 0032442762 scopus 로고    scopus 로고
    • Phylogenetic relationships in Helianthus (Asteraceae) based on nuclear ribosomal DNA internal transcribed spacer region sequence data
    • Schilling EE, Linder CR, Noyes R, Rieseberg LH. 1998. Phylogenetic relationships in Helianthus (Asteraceae) based on nuclear ribosomal DNA internal transcribed spacer region sequence data. Systematic Botany 23: 177-187.
    • (1998) Systematic Botany , vol.23 , pp. 177-187
    • Schilling, E.E.1    Linder, C.R.2    Noyes, R.3    Rieseberg, L.H.4
  • 42
    • 0036715287 scopus 로고    scopus 로고
    • Likely multiple origins of a diploid hybrid sunflower species
    • Schwarzbach AE, Rieseberg LH. 2002. Likely multiple origins of a diploid hybrid sunflower species. Molecular Ecology 11: 1703-1715.
    • (2002) Molecular Ecology , vol.11 , pp. 1703-1715
    • Schwarzbach, A.E.1    Rieseberg, L.H.2
  • 43
    • 33751228457 scopus 로고    scopus 로고
    • Intrageneric phylogeny of Capsella (Brassicaceae) and the origin of the tetraploid C. bursa-pastoris based on chloroplast and nuclear DNA sequences
    • Slotte T, Ceplitis A, Neuffer B, Hurka H, Lascoux M. 2006. Intrageneric phylogeny of Capsella (Brassicaceae) and the origin of the tetraploid C. bursa-pastoris based on chloroplast and nuclear DNA sequences. American Journal of Botany 93: 1714-1724.
    • (2006) American Journal of Botany , vol.93 , pp. 1714-1724
    • Slotte, T.1    Ceplitis, A.2    Neuffer, B.3    Hurka, H.4    Lascoux, M.5
  • 45
    • 0001632482 scopus 로고
    • Allopolyploid speciation in Tragopogon: insights from chloroplast DNA
    • Soltis DE, Soltis PS. 1989. Allopolyploid speciation in Tragopogon: insights from chloroplast DNA. American Journal of Botany 76: 1119-1124.
    • (1989) American Journal of Botany , vol.76 , pp. 1119-1124
    • Soltis, D.E.1    Soltis, P.S.2
  • 46
    • 0033198094 scopus 로고    scopus 로고
    • Polyploidy: recurrent formation and genome evolution
    • Soltis DE, Soltis PS. 1999. Polyploidy: recurrent formation and genome evolution. Trends in Ecology & Evolution 14: 348-352.
    • (1999) Trends in Ecology & Evolution , vol.14 , pp. 348-352
    • Soltis, D.E.1    Soltis, P.S.2
  • 48
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 49
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 50
    • 36249009795 scopus 로고    scopus 로고
    • High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer
    • Timme RE, Simpson BB, Linder CR. 2007. High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer. American Journal of Botany 94: 1837-1852.
    • (2007) American Journal of Botany , vol.94 , pp. 1837-1852
    • Timme, R.E.1    Simpson, B.B.2    Linder, C.R.3
  • 51
    • 84872480881 scopus 로고    scopus 로고
    • Genome-wide RAD sequence data provides unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
    • Wagner CE, Keller I, Wittwer S, Selz OM, Mwaiko S, Greuter L, Sivasundar A, Seehausen O. 2013. Genome-wide RAD sequence data provides unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation. Molecular Ecology 22: 787-798.
    • (2013) Molecular Ecology , vol.22 , pp. 787-798
    • Wagner, C.E.1    Keller, I.2    Wittwer, S.3    Selz, O.M.4    Mwaiko, S.5    Greuter, L.6    Sivasundar, A.7    Seehausen, O.8
  • 52
  • 53
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20: 3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 54
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18: 821-829.
    • (2008) Genome Research , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.